KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:10 2014 Check: 00 .. Name: ENSP00000327465/1-1121 Len: 1681 Check: 3745 Weight: 1.00 Name: ENSBTAP00000038860/1-1100 Len: 1681 Check: 9440 Weight: 1.00 Name: ENSTTRP00000012722/1-1076 Len: 1681 Check: 9485 Weight: 1.00 Name: bmy_14509T0/1-1161 Len: 1681 Check: 5413 Weight: 1.00 Name: BACU011223/1-1566 Len: 1681 Check: 2932 Weight: 1.00 // 1 50 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- MVYGC--FSE NAS------- -----IGIGK BACU011223/1-1566 MRGGSGLVPV SPNPGSSVHR TLLGCQELPT HPSRVKVEVE ALIPRVRLGG 51 100 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---MSLENED ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---MSLENDE ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---MSLENDE bmy_14509T0/1-1161 KGLTSPGGRE NEFRGELLSQ RWTHGDKTDN CRTPRLFLGG HGKMSLENDE BACU011223/1-1566 EASSEGAGQE NEFRGELLSQ RWTHGDKTDN CRTPRLFLGG HGKMSLENDE 101 150 ENSP00000327465/1-1121 KRARTRSKAL RGPPETTAAD LSCPTPGCTG SGHVRGKYSR HRSLQSCPLA ENSBTAP00000038860/1-1100 KRARTRSKAL RAPLEPTGAD LSCPTPGCTG SGHIRGKYSR HRSLQSCPLA ENSTTRP00000012722/1-1076 KRARTRSKAL RAPPEPTGAD LSCPTPGCTG SGHIRGKYSR HRSLLSCPLA bmy_14509T0/1-1161 KRARTRSKAL RAPPEPTGAD LSCPTPGCTG SGHIRGKYSR HRSLLSCPLA BACU011223/1-1566 KRARTRSKAL RAPPEPTGAD LSCPTPGCTG SGHIRGKYSR HRSLLSCPLA 151 200 ENSP00000327465/1-1121 KKRKLEGAEA EHLVSKRKSH PLKLALDEGY GVDSDGSEDT EVKDASVSDE ENSBTAP00000038860/1-1100 KKRKLEGPEA EHLGSKRKAP PLKLALDEGY GMDSDGSEDT EVKDASVSDE ENSTTRP00000012722/1-1076 KKRKLGGAEA EHLGSKRKAH PLKLALDEGY GVDSDSSEDA EVKGASVSDE bmy_14509T0/1-1161 KKRKLEGAEA EHLGSKRKAH PLKLALDEGY GVESDGSDDA EVKGASVSGE BACU011223/1-1566 KKRKLEGAEA EHLGSRRKAQ PLKLALDEGY GVESDGSEDA EVKGASVSGE 201 250 ENSP00000327465/1-1121 SEGTLEGAEA ETSGQDEIHR PETAEGRSPV KSHFGSNPIG SATASSKGSY ENSBTAP00000038860/1-1100 SEGTVEEDEA EASGQEEIHR PEPAEGRSPV KAHFASNPIS SPSGSSKGSY ENSTTRP00000012722/1-1076 SEGTAEEDEA EASGQEEIHR PEPAEGRSPI KARFGSNPIS SLTGSSKGSY bmy_14509T0/1-1161 SEGTAEENEA AASGQEDIHR PEPAEGRSPV KARFGSNPIS SLTGPSKGSY BACU011223/1-1566 SEGTAEEDEA AASGQEDIHR PEPAEGRSPV KARFGSNPIS SLTGPSKGSY 251 300 ENSP00000327465/1-1121 SSYQGIIATS LLNLGQIAEE TLVEEDLGQA AKPGPGIVHL L-QEAAEGAA ENSBTAP00000038860/1-1100 SSYQEIIATS LLNLGQIAEE TLVGGDSGQV GTPG------ LVQEAEEEAT ENSTTRP00000012722/1-1076 SSYQEIIATS LLNLGQIAEE TLVGEDSGQG AKRGAGIVRL VREEAEEGAT bmy_14509T0/1-1161 SSYQEIIATS LLNLGQIAEE TLVGADSGQG AKPGAGIVXL VQEEAEEGAT BACU011223/1-1566 SSYQEIIATS LLNLGQIAEE TLVGADSGQG AKPGSGIVRL VREEAEEGAT 301 350 ENSP00000327465/1-1121 SEEGEKGLFI QPEDAEEVVE VTTERSQDLC PQSLEDAASE ESSKQKGILS ENSBTAP00000038860/1-1100 SDEGEKEDFI QPEDVEEVIE VTSERSQEPG PQSLESVASE ASSKQKVILG ENSTTRP00000012722/1-1076 SGAGEKGVFV QPEDAEEAIE ATRERSQELC PQSLEGVASE ESSKQRVAL- bmy_14509T0/1-1161 SDEGEKDVFI QPEDAEEVIE VTSERSQELC PQSLEGVASE ESSKQRVALG BACU011223/1-1566 SDEGEKDVFI QPEDAEEVIE VTSERSQELC PQSLECVASE VSSKQRVALG 351 400 ENSP00000327465/1-1121 HEEEDEEEEE EEEEEEEDEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE ENSBTAP00000038860/1-1100 N--------- ---------- -EEEEEEEEE EEEDDDEEED DEEDEEDEEE ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ------HAGD bmy_14509T0/1-1161 N--------- ---------- ---------- -------EEE EEEEDEDEDE BACU011223/1-1566 N--------- ---------- ---------- -------EDE DEDEDEDEDE 401 450 ENSP00000327465/1-1121 AAPDVIFQED TSHTSAQKAP ELRGPESPSP KPEYSVIVEV RSDDD-KDED ENSBTAP00000038860/1-1100 APPDVICQED APHVPVPKSP QPRGPVPPSP KPGYSVLVEV RSDD-GKDED ENSTTRP00000012722/1-1076 APPDAICQEQ APPAPRPEAS EPRRPAPPSP RPAYSVLVEV RSDDNGKDED bmy_14509T0/1-1161 APPDVICQDE APHVPPPKAS EPRRPAPPSP KPAYSVLVEV RSDDDGKDED BACU011223/1-1566 APPDVICQDR APHDPPPKAS EPRRPASPSP KPAFSVLVEV RSDDDGKDED 451 500 ENSP00000327465/1-1121 THSRKSTVTD ESEMQDMMTR GNLGLLEQAI ALKAEQVRTV CEPGCPPAEQ ENSBTAP00000038860/1-1100 SRSQKSAVTD ESEMYDMMTR GNLGLLEQAI ALKAEQVRAV CEPGCPPAEQ ENSTTRP00000012722/1-1076 SRSQKSTVTD ESEMYDMMTR GNLGLLEQAI ALKAEQVRAV REPGCPPAEQ bmy_14509T0/1-1161 SRSQKSTVTD ESEMYDMMTR GNLGLLEQAI ALKAEQVRAV REPGCPPAEQ BACU011223/1-1566 SRSQKSTVTD ESEMYDMMTR GNLGLLEQAI ALKAEQVRAV REPGCPPAEQ 501 550 ENSP00000327465/1-1121 SQLGLGEPGK AAKPLDTVRK SYYSKDPSRA EKREIKCPTP GCDGTGHVTG ENSBTAP00000038860/1-1100 GPLGPGEPGK AARPLDAARK SYCSKDPSRT EKREIKCPTP GCDGTGHVTG ENSTTRP00000012722/1-1076 GPLGPGEPGK AARPLDAARK SYCSKDPSRA EKREIKCPTP GCDGTGHVTG bmy_14509T0/1-1161 GPLGPGEPGK AARPLDATRK SYCSKDPARA EKREIKCPTP GCDGTGHVTG BACU011223/1-1566 GPPGPGEPGK AARPLDATRK SYCSKDPARA EKREIKCPTP GCDGTGHVTG 551 600 ENSP00000327465/1-1121 LYPHHRSLSG CPHKDRIPPE ILAMHENVLK CPTPGCTGQG HVNSNRNTHR ENSBTAP00000038860/1-1100 LYPHHRSLSG CPHKDRIPPE ILAMHENVLK CPTPGCTGQG HVNSNRNTHR ENSTTRP00000012722/1-1076 LYPHHRSLSG CPHKDRIPPE ILAMHENVLK CPTPGCTGQG HVNSNRNTHR bmy_14509T0/1-1161 LYPHHRSLSG CPHKDRIPPE ILAMHENVLK CPTPGCTGQG HVNSNRNTHR BACU011223/1-1566 LYPHHRSLSG CPHKDRIPPE ILAMHENVLK CPTPGCTGQG HVNSNRNTHR 601 650 ENSP00000327465/1-1121 SLSGCPIAAA EKLAKSHEKQ QPQTGDPSKS SSNSDRILRP MCFVKQLEVP ENSBTAP00000038860/1-1100 SLSGCPIAAA EKLAKSHEKQ QPQPGEPSKN SSNSDRILRP MCFVKQLEVP ENSTTRP00000012722/1-1076 SLSGCPIAAA EKLAKSHEKQ QPPTGDPSKN SSSSDRILRP MCFVKQLEVP bmy_14509T0/1-1161 ---------- ---------- ---------- --------RP MCFVKQLEVP BACU011223/1-1566 SLSGCPIAAA EKLAKSHEKQ QPQTGDPSKN SSNSDRILRP MCFVKQLEVP 651 700 ENSP00000327465/1-1121 PYGSYRPNVA PATPRANLAK ELEKFSKVTF DYASFDAQVF GKRMLAPKIQ ENSBTAP00000038860/1-1100 PYGSYRPSVA PTTPRANLAK ELEKFSKVTF DYASFDAQVF GKRMLAPKIQ ENSTTRP00000012722/1-1076 PYGSYRPSVA STTPRANLAK ELEKFSKVTF DYASFDAQVF GKRMLAPKIQ bmy_14509T0/1-1161 PYGSYRPSVA STTPRANLAK ELEKFSKVTF DYASFDAQVF GRRVLAPKIQ BACU011223/1-1566 PYGSHRPSVA STTPRANLAK ELEKFSKVTF DYASFDAQVF GRRVLAPKIQ 701 750 ENSP00000327465/1-1121 TSETSPKAFQ C--------- ---------- --FDYSQDAE AAHMAATAIL ENSBTAP00000038860/1-1100 TSETSPKAFK C--------- ---------- --FDYAHDAE AAHMAATAIL ENSTTRP00000012722/1-1076 TSETSPKAFK C--------- ---------- --FDYAHDAE AAHMAATAIL bmy_14509T0/1-1161 TSETSPKAFK C--------- ---------- --FSL----- ---------- BACU011223/1-1566 TSETSPKAFK SKPFPKASPP RPSPCTSSSS TGFDYAHDAE AAHMAATAIL 751 800 ENSP00000327465/1-1121 NLSTRCWEMP ENLSTKPQDL PSKSVDIEVD ENGTLDLSMH KHRKRENAFP ENSBTAP00000038860/1-1100 NLSTRCWEMP ENLSTKPQDL PSKAADIEVD ENGTLDLSMH KHRRRENTFP ENSTTRP00000012722/1-1076 NLSTRCWEMP ENLSTKPQDL PGKATDIAVD ENGTLDLSMH RHRRRENAFP bmy_14509T0/1-1161 -LVWLCFLWG ETLSGLP--- ---ATDIEVD ENGTLDLSMR RHRRRESAFP BACU011223/1-1566 NLSTRCWEMP ENLSTKPQDL PSKATDIEVD ENGTLDLSMR RHRRRENAFP 801 850 ENSP00000327465/1-1121 SSSSCSSSPG VKSPDASQRH SSTSAPSSSM TSPQSSQASR QDEWDRPLDY ENSBTAP00000038860/1-1100 SGSSSSSSPG VKSPDACQRQ SSTSAPSSSL TSPPSSHASR QDEWDRPLDY ENSTTRP00000012722/1-1076 GG---GGGPG VTSPDASQGQ SIT-APSSSV TSPQSSHASR QDEWDRPLDY bmy_14509T0/1-1161 GG-----GPG VTSPDASQGQ GVPGAPSSSV TSPPSSHASR QDEWDRPLDY BACU011223/1-1566 GG---GGGPG VASPDASQGQ SVPGAPSSSV TSAPSSHASR QDEWDRPLDY 851 900 ENSP00000327465/1-1121 TKPSRLREEE PEESEPAAHS FASSEADDQE VSEENFEERK YPGEVTLTNF ENSBTAP00000038860/1-1100 TKPSRPREEE PEESEPAAHS FASSEADDQE VSEENFEERK YPGEVTLANF ENSTTRP00000012722/1-1076 TKPSRQREEE PEESEPAAHS FASSEADDQE ASEENFEERK YPGEVTLANF bmy_14509T0/1-1161 TKPSRQREEE PEESEPAAHS FASSEADDQE VSEENFEERK YPGEVTLANF BACU011223/1-1566 TKPSRQREEE PEESEPAAHS FASSEADDQE VSEENFEERK YPGEVTLANF 901 950 ENSP00000327465/1-1121 KLKFLSKDIK KELLTCPTPG CDGSGHITGN YASHR----- ---------S ENSBTAP00000038860/1-1100 KLKFLSKDIK KELLTCPTPG CDGSGHITGN YASHR----- ---------S ENSTTRP00000012722/1-1076 KLKFLSKDIK KELLTCPTPG CDGSGHITGN YASHR----- ---------S bmy_14509T0/1-1161 KLKFLSKDIK KELLTCPTPG CDGSGHITGN YASHRRFVRT RVRPGLGAAC BACU011223/1-1566 KLKFLSKDIK KELLTCPTPG CDGSGHVTGN YASHR----- ---------S 951 1000 ENSP00000327465/1-1121 LSGCPLADKS LRNLMAAHSA DL-------- ---------- ---------- ENSBTAP00000038860/1-1100 LSGCPLADKS LRNLMAAHSA DL-------- ---------- ---------- ENSTTRP00000012722/1-1076 LSGCPLADKS LRNLMAAHSA DL-------- ---------- ---------- bmy_14509T0/1-1161 LSGCPLADKS LRNLMAAHSA DLKGPSVEPT PCFSQAAGWM WPGSPMRLSP BACU011223/1-1566 LSGCLLADKS LRNLMAAHSA DL-------- ---------- ---------- 1001 1050 ENSP00000327465/1-1121 ---------- ---------- ---------- ----KCPTPG CDGSGHITGN ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ----KCPTPG CDGSGHITGN ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ----KCPTPG CDGSGHITGN bmy_14509T0/1-1161 SPARWGFGTL ISLVAVSAEG DLSTGGKGTC AMPCKCPTPG CDGSGHITGN BACU011223/1-1566 ---------- ---------- ---------- ----KCPTPG CDGSGHITGN 1051 1100 ENSP00000327465/1-1121 YASHRSLSGC PRAKKSGVKV APTKDDKEDP ELMKCPVPGC VGLGHISGKY ENSBTAP00000038860/1-1100 YASHRSLSGC PRAKKSGAKA TPAKDDKEDP ELMKCPVPGC VGLGHISGKY ENSTTRP00000012722/1-1076 YASHRSLSGC PRAKKSGAKA TPAKDDKEDP ELMKCPVPGC VGLGHISGKY bmy_14509T0/1-1161 YASHRSLSGC PRAKKSGAKA TPAKDDKEDP ELMKCPVPGC VGLGHISGKY BACU011223/1-1566 YASHRSLSGC PRAKKSGAKA TPTKDDKEDP ELMKCPVPGC VGLGHISGKY 1101 1150 ENSP00000327465/1-1121 ASHRSASGCP LAARRQKEGS LNGSSFSWKS LKNEGPTCPT PGCDGSGHAN ENSBTAP00000038860/1-1100 ASHRSASGCP LAARRQKEGS LNGSSFSWKS LKNEGPACPT PGCDGSGHAN ENSTTRP00000012722/1-1076 ASHRSASGCP LAARRQKEGS LNGSSSSWKP LKNEGPTCPT PGCDGSGHAN bmy_14509T0/1-1161 ASHRSASGCP LAARRQKEGS LNGSSSSWKP LKNEGPTCPT PGCDGSGHAN BACU011223/1-1566 ASHRSASGCP LAARRQKEGS LNGSSASWKP LKNEGPTCPT PGCDGSGHAN 1151 1200 ENSP00000327465/1-1121 GSFLTHRSLS GCPRATFAGK KGKLSGDEVL SPKFKTSDVL ENDEEIKQLN ENSBTAP00000038860/1-1100 GSFLTHRSLS GCPRATFAGK KGKLSGDEVL GTKFKTSDVL DNDEEIKQLN ENSTTRP00000012722/1-1076 GSFLTHRSLS GCPRATFAGK KGKVSGDEVL GTKFKTSDVL DSDEEIKQLN bmy_14509T0/1-1161 GSFLTHRSLS GCPRATFAGK KGKVSGDELL GTKFKTSDVL DNDEEIKQLN BACU011223/1-1566 GSFLTHRSLS GCPRATFAGK KGKVSGDELL GTKFKTSDVL DNDEEIKQLN 1201 1250 ENSP00000327465/1-1121 QEIRDLNESN SEMEAAMVQL QSQISSMEKN LKNIEEENKL IEEQNEALFL ENSBTAP00000038860/1-1100 QEIRDLNESN SEMEAAMLQL QSQISSMEKS LKNIEEENKL IEEQNEALFL ENSTTRP00000012722/1-1076 QEIRDLNESN SEMEAAMVQL QSQISSMERS LKSIEEENRL IEEQNEALFL bmy_14509T0/1-1161 QEIRDLNESN SEMEAAMVQL QSQISSMEKS LKDIEQENKL IEEQNEALFL BACU011223/1-1566 QEIRDLNESN SEMEAAMVQL QSQISSMEKS LKNIEQENKL IEEQNEALFL 1251 1300 ENSP00000327465/1-1121 ELSGLSQALI QSLANIRLPH MEPICEQNFD AYVSTLTDMY SN----QDPE ENSBTAP00000038860/1-1100 ELSGLSQALI QSLANIRLPH MEPICEQNFD AYVSTLTDMY SNQECYQNPE ENSTTRP00000012722/1-1076 ELSGLSQALI QSLANIRLPH MEPICEQNFD AYVSTLTDMY SNQECYQNPE bmy_14509T0/1-1161 ELSGLSQALI QSLANIRLPH MEPICEQNFD AYVSTLTDMY SNQECYQDPE BACU011223/1-1566 ELSGLSQALI QSLANIRLPH MEPICEQNFD AYVSTLTDMY SNQECYQDPE 1301 1350 ENSP00000327465/1-1121 NKDLLESIKQ AVRGIQV--- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 NKDLLESIKQ AVRGIQV--- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 NKDLLESIKQ AVRGIQV--- ---------- ---------- ---------- bmy_14509T0/1-1161 NKDLLESIKQ AVRGIQV--- ---------- ---------- ---------- BACU011223/1-1566 NKDLLESIKQ AVRGIQVTPK MGGAVSAGED NDELIDNLKE AQYIRSELVE 1351 1400 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- ---------- ---------- ---------- BACU011223/1-1566 RAFRAVDRAD YYLEEFKENA YKDLAWKHGN IHLSAPCIYS EVMEALDLQP 1401 1450 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- ---------- ---------- ---------- BACU011223/1-1566 GLSFLNLGSG TGYLSSMVGL ILGPFGVNHG VELHSDVTEY AKQKLDFFIR 1451 1500 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- ---------- ---------- ---------- BACU011223/1-1566 TSDSFDKFDF CEPCFVTGNC LELSPACSQY DRVYCGAGVQ KEHEEYMKSL 1501 1550 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- ---------- ---------- ---------- BACU011223/1-1566 LKVGGVLVMP LEEKLTKITR TGPSAWETKK ILAVSFAPLI QPCHSESGKS 1551 1600 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- ---------- ---------- ---------- BACU011223/1-1566 RLVQLPPLAV RSLQDLARIA IRGAIKKVIR QEAVNRNGNG LKNTPRFKRR 1601 1650 ENSP00000327465/1-1121 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038860/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012722/1-1076 ---------- ---------- ---------- ---------- ---------- bmy_14509T0/1-1161 ---------- ---------- ---------- ---------- ---------- BACU011223/1-1566 RVRRRRMETI VFLDKEVFAS RISNPSDDTS CGDLEEERQG EEATTPPDTR 1651 1700 ENSP00000327465/1-1121 ---------- ---------- ---------- - ENSBTAP00000038860/1-1100 ---------- ---------- ---------- - ENSTTRP00000012722/1-1076 ---------- ---------- ---------- - bmy_14509T0/1-1161 ---------- ---------- ---------- - BACU011223/1-1566 PEPPVNFLRE KVLSLPLPDP LKYYLLYYRE K