KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:46 2014 Check: 00 .. Name: ENSP00000310661/1-450 Len: 570 Check: 2306 Weight: 1.00 Name: ENSBTAP00000037568/1-438 Len: 570 Check: 3295 Weight: 1.00 Name: ENSTTRP00000002376/1-569 Len: 570 Check: 4828 Weight: 1.00 Name: bmy_08160T0/1-269 Len: 570 Check: 7518 Weight: 1.00 Name: BACU014330/1-358 Len: 570 Check: 2188 Weight: 1.00 // 1 50 ENSP00000310661/1-450 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037568/1-438 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002376/1-569 SESLSSSVFV EGLEGQGFAR LEEACLSEAG EDFPGVRLPL PGKNFPSGSS bmy_08160T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU014330/1-358 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000310661/1-450 ---------- ---------- ---------- ---------- -MSCLMVERC ENSBTAP00000037568/1-438 ---------- ----MPVLER YFHSAELGRR WTAPEGELPA PLGSRPGCQQ ENSTTRP00000002376/1-569 RSSSATSSSG DQGRMPVLER YFHSAELGRR WTAPEGVLPS SLGSRPVCQQ bmy_08160T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU014330/1-358 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000310661/1-450 GEILFENPD- ---------- ---------- ----QNAKCV CMLGDIRLRG ENSBTAP00000037568/1-438 GPLPWDLPEM IRMVKLVWKS KSELQATKQR GILENEDALH SIPGDVRLRG ENSTTRP00000002376/1-569 GPLPWDLPEM IRMVKLVWKS KSELQATKQR GILENEDALH SFPGDVRLRG bmy_08160T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU014330/1-358 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000310661/1-450 QTGVRAERRG SYPFIDFRLL NSTTYSGEIG TKKKVKRLLS FQRYFHASRL ENSBTAP00000037568/1-438 QTGVPAERRG SYPFIDFRLL NNTTHSGEIG TKKKVKRLLS FQRYFHASRL ENSTTRP00000002376/1-569 QTGVPAERRG SYPFIDFRLL NNTTHSGEIG TKKKVKRLLS FQRYFHASRL bmy_08160T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU014330/1-358 ---------- --------LS TDTTYSGEIG TKKKVKRLLS FQRYFHASRL 201 250 ENSP00000310661/1-450 LRGIIPQAPL HLLDEDYLGQ ARHMLSKVGM WDFDIFLFDR LTNGNSLVTL ENSBTAP00000037568/1-438 LRGIIPQAPL HLLDEDYLGQ ARHMLSKVGM WDFDIFLFDR LTNGNSLVTL ENSTTRP00000002376/1-569 LRGIIPQAPL HLLDEDYLGQ ARHMLSKVGM WDFDIFLFDR LTNGNSLVTL bmy_08160T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU014330/1-358 LRGIIPQAPL HLLDEDYLGQ AR-------L IELSVYL--- ---------- 251 300 ENSP00000310661/1-450 LCHLFNTHGL IHHFKLDMVT LHRFLVMVQE DYHSQNPYHN AVHAADVTQA ENSBTAP00000037568/1-438 LCHLFNTHGL IHHFKLDMVT LHRFLVMVQE DYHSQNPYHN AVHAADVTQA ENSTTRP00000002376/1-569 LCHLFNAHGL IHHFKLDMVT LHRFLVMVQE DYHSQNPYHN AVHAADVTQA bmy_08160T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU014330/1-358 ---------- ---------- ----LVMVQE DYHSQNPYHN AVHAADVTQA 301 350 ENSP00000310661/1-450 MHCYLKEPKL ASFLTPLDIM LGLLAAAAHD VDHPGVNQPF LIKTNHHLAN ENSBTAP00000037568/1-438 MHCYLKEPKL ASFLTPLDIM LGLLAAAAHD VDHPGVNQPF LIKTNHHLAN ENSTTRP00000002376/1-569 MHCYLKEPKL ASSLTPLDIM LGLLAAAAHD VDHPGVNQPF LIKTNHHLAN bmy_08160T0/1-269 MHCYLKEPKL ASSLTPLDIM LGLLAAAAHD VDHPGVNQPF LIKTNHHLAN BACU014330/1-358 MHCYLKEPKL ASSLTPLDIM LGLLAAAAHD VDHPGVNQPF LIKTNHHLAN 351 400 ENSP00000310661/1-450 LYQNMSVLEN HHWRSTIGML RESRLLAHLP KEMTQDIEQQ LGSLILATDI ENSBTAP00000037568/1-438 LYQNMSVLEN HHWRSTIGML RESRLLAHLP KEMTQDIEQQ LGSLILATDI ENSTTRP00000002376/1-569 LYQNMSVLEN HHWRSTIGML RESRLLAHLP KEMTQNIEQQ LGSLILATDI bmy_08160T0/1-269 LYQNMSVLEN HHWRSTIGML RESRLLAHLP KEMTQDIEQQ LGSLILATDI BACU014330/1-358 LYQNMSVLEN HHWRSTIGML RESRLLAHLP KEMTQDIEQQ LGSLILATDI 401 450 ENSP00000310661/1-450 NRQNEFLTRL KAHLHNKDLR LEDAQDRHFM LQIALKCADI CNPCRIWEMS ENSBTAP00000037568/1-438 NRQNEFLTRL KAHLHNKDLR LEEVHDRHFM LQIALKCADI CNPCRIWEMS ENSTTRP00000002376/1-569 NRQNEFLTRL KAHLHNKDLS LEDVHDRHFM LQIALKCADI CNPCRIWEMS bmy_08160T0/1-269 NRQNEFLTRL KAHLHNKDLR LEDVHDRHFM LQIALKCADI CNPCRIWEMS BACU014330/1-358 NRQNEFLTRL KAHLHNKDLR LEDVHDRHFM LQIALKCADI CNPCRIWEMS 451 500 ENSP00000310661/1-450 KQWSERVCEE FYRQGELEQK FELEISPLCN QQKDSIPSIQ IGFMSYIVEP ENSBTAP00000037568/1-438 KQWSERVCEE FYRQGDLEQK FELEISPLCN QQKDSIPSIQ IGELSSIV-- ENSTTRP00000002376/1-569 KQWSERVCEE FYRQGDLEQK FELEISPLCN QQKDSIPSIQ IGFMTYIVEP bmy_08160T0/1-269 KQWSERVCEE FYRQGDLEQK FELEISPLCN QQKDSIPSIQ IGFMTYIVEP BACU014330/1-358 KQWSERVCEE FYRQGDLEQK FELEISPLCN QQKDSIPSIQ IGFMTYIVEP 501 550 ENSP00000310661/1-450 LFREWAHFTG NSTLSENMLG HLAHNKAQWK SLLPRQHRSR GSSGSGPDHD ENSBTAP00000037568/1-438 ---------- --ILNE---- ---------- ---------- ---------- ENSTTRP00000002376/1-569 LFREWARFTG HSTLSESMLS HLAHNKAQWK RLLPNQRRSS SGGGGSGGPD bmy_08160T0/1-269 LFXEWARFTG HSALSESMLS HLAHNKAQWK RLLPNQHRSS SGGGGSGGPD BACU014330/1-358 LFREWARFTG HSALSESMLS HLAHNKAQWK RLLPNQHRSS SSGGGSGGPD 551 600 ENSP00000310661/1-450 HAGQGT-ESE EQ---EGDSP ENSBTAP00000037568/1-438 ---------- ---------- ENSTTRP00000002376/1-569 HTGPGT-EAE GQTVTEGDAP bmy_08160T0/1-269 HAGPGT-EAE EQTVTEGDAP BACU014330/1-358 HAGPGTAQAE EQTVTEGNAP