KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:10 2014 Check: 00 .. Name: ENSTTRP00000016113/1-1016 Len: 1452 Check: 329 Weight: 1.00 Name: ENSP00000261655/1-1052 Len: 1452 Check: 3471 Weight: 1.00 Name: ENSBTAP00000036905/1-1311 Len: 1452 Check: 2627 Weight: 1.00 Name: bmy_17973T0/1-1284 Len: 1452 Check: 7520 Weight: 1.00 Name: BACU013683/1-1354 Len: 1452 Check: 7395 Weight: 1.00 // 1 50 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036905/1-1311 ---------- ---------- ---------- ---------- ---------- bmy_17973T0/1-1284 ---------- ---------- ---------- ---------- ---------- BACU013683/1-1354 MRPVRKVFRL LLGSPALVAL INPEGLDLIG AVTASPGGQL WSCTVSMMKA 51 100 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036905/1-1311 ---------- ---------- ---------- ---------- ---------- bmy_17973T0/1-1284 ---------- ---------- ---------- ---------- ---------- BACU013683/1-1354 SRENVLKDAA QGDHRLRPHH AGLPARARQL DKVKAEYARL KHTLTIVTRE 101 150 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ----MREAAE RRQQLQLEHD QALAVLSAKQ ENSBTAP00000036905/1-1311 ---------- ---------- ----MREAAE RRQQLELEHE QALAILNAKQ bmy_17973T0/1-1284 ---------- ---------- ----MREAAE RRQQLELEHE QALAVLNAKQ BACU013683/1-1354 RDLAVKEKHQ LQAKLENLEQ VLKHMREAAE RRQQLELEHE QALAVLNAKQ 151 200 ENSTTRP00000016113/1-1016 ---------- ---------- -----RRARE LEEKCRAQSE QFSLLSRDLG ENSP00000261655/1-1052 QEIDLLQK-- ---------- -----SKVRE LEEKCRTQSE QFNLLSRDLE ENSBTAP00000036905/1-1311 QEIDLLQKAQ VEAKKEHEGA VQLLECKVRE LEEKCRTQSE QFSLLSRDLE bmy_17973T0/1-1284 QEIDLLQK-- ---------- -----CRVRE LEEKCRAQGE QFSLLSRDLE BACU013683/1-1354 QEIDLLQK-- ---------- -----CRVRE LEEKCRAQSE QFSLLSRDLD 201 250 ENSTTRP00000016113/1-1016 RLREHAGEID LQGGS---SL DVPSSPGKPF RSFMNGLAPS IGKGHESSAG ENSP00000261655/1-1052 KFRQHAGKID LLGGSAVAPL DISTAPSKPF PQFMNGLATS LGKGQESAIG ENSBTAP00000036905/1-1311 QFRQHAGKID LLGGSTVASL DVPSSPSKSF PRFMNGLAPS IGKGQESAPG bmy_17973T0/1-1284 QLRQHAGESD LLGGS---SL DVPASPGKPF RRFVNGLAPS IGKGQESTIG BACU013683/1-1354 QLRQHAGEID LLGGS---SL DVPSSPGKPF RRFMNGLAPP IGKGQESSIG 251 300 ENSTTRP00000016113/1-1016 SRTVIGESIR PLPLPGDKPE PLSIKPPFLS RCG-PRCRFE ADMDNEWNSS ENSP00000261655/1-1052 GSSAIGEYIR PLPQPGDRPE PLSAKPTFLS RSGSARCRSE SDMENERNSN ENSBTAP00000036905/1-1311 SHTVIGEYIR PLPLPGDKPE PLSVKPTFLS RSGGPRCRFE SDMDNDRNSN bmy_17973T0/1-1284 SRAVIGEYIR PLPLPGDKPE PLSVKPAFLS RSGGPRCRFE SDMDNERNSN BACU013683/1-1354 SRAVIREYIQ PLPLPGDKPE PLSVKPAFLS RSGGPRCRFE SDMDNERNSS 301 350 ENSTTRP00000016113/1-1016 TAKQRYSGKV HLCVARYSYN PFDGPNENPE AELPLTAGKY LYVYGDMDED ENSP00000261655/1-1052 TSKQRYSGKV HLCVARYSYN PFDGPNENPE AELPLTAGKY LYVYGDMDED ENSBTAP00000036905/1-1311 TAKQRYSGKV HLCVARYSYN PFDGPNENPE AELPLTAGKY LYVYGDMDED bmy_17973T0/1-1284 TAKQRYSGKV HLCVARYSYN PFDGPNENPE AELPLTAGKY LYVYGDMDED BACU013683/1-1354 TAKQRYSGKV HLCVARYSYN PFDGPNENPE AELPLTAGKY LYVYGDMDED 351 400 ENSTTRP00000016113/1-1016 GFYEGELLDG QRGLVPSNFV DFVQD-ESRL ASTLGKDQDQ NFINHAGIGS ENSP00000261655/1-1052 GFYEGELLDG QRGLVPSNFV DFVQDNESRL ASTLGNEQDQ NFINHSGIGL ENSBTAP00000036905/1-1311 GFYEGELLDG QRGLVPSNFV DFIQDNESRL ASTLGNDQDQ NFINHAGISS bmy_17973T0/1-1284 GFYEGELLDG QRGLVPSNFV DFVQD-GSRL ASTLGKDQDQ SVISHAGVGS BACU013683/1-1354 GFYEGELLDG QRGLVPSNFV DFVQD-ESRL ASTLGKDQDQ SAVSHAGVGS 401 450 ENSTTRP00000016113/1-1016 DGERILDLHS PTHTDSGPSD HGAGTLDMNI DDIGEDIVPY PRKITLIKQL ENSP00000261655/1-1052 EGEHILDLHS PTHIDAGITD NSAGTLDVNI DDIGEDIVPY PRKITLIKQL ENSBTAP00000036905/1-1311 EGENILDLHS PTLTDSSLAD HGAGTLDVNI DDIGEDIVPY PRKITLIKQL bmy_17973T0/1-1284 EGEHILDLHS PTHADSGLSD HGAGTRDVNI DDVGEDTVPY PRKITLIKQL BACU013683/1-1354 EAEHILDLHS PTRADSGLSD HGAGTRDVNT DDVGEDTVPY PRKITLIKQL 451 500 ENSTTRP00000016113/1-1016 AKSVIVGWEP PAVPPGWGTV GTYNVLVDAE TRLSLALGGR TKALVEKLDT ENSP00000261655/1-1052 AKSVIVGWEP PAVPPGWGTV SSYNVLVDKE TRMNLTLGSR TKALIEKLNM ENSBTAP00000036905/1-1311 AKSVIVGWEP PAVPPGWGTV NSYNVLVDAE TRLSLALGGR TKALVEKLNM bmy_17973T0/1-1284 AKSVIVGWEP PAVPPGWGAV SSYNVLVDAE TRLSLAPGGR TKALVEKLNM BACU013683/1-1354 AKSVIVGWEP PAVPPGWGAV SSYSVLVDAE TRLSLAPGGR TKALVEKLNM 501 550 ENSTTRP00000016113/1-1016 AACTYRISVQ CATSRGSSDG LRCTLLVGKD VVVAPSHLRV DNITQVSAQL ENSP00000261655/1-1052 AACTYRISVQ CVTSRGSSDE LQCTLLVGKD VVVAPSHLRV DNITQISAQL ENSBTAP00000036905/1-1311 AACTYRISVQ CVTSRGSSDE LRCTLLVGKD VVVAPSHLRV DNITQISAQL bmy_17973T0/1-1284 AACTYRISVQ CVTSRGSSDK LRCTLLVGKD VVVAPSHLRV DSITQVSARL BACU013683/1-1354 AARTYRISVQ CVTSRGSSDK LRCSLLVGKD VVVAPSRLRV DSITQVSARL 551 600 ENSTTRP00000016113/1-1016 SWMPTNSNYS HVIFLNEQEL DVVRATSYK- QFCNLRPNAA YKVKVLAKPH ENSP00000261655/1-1052 SWLPTNSNYS HVIFLNEEEF DIVKAARYKY QFFNLRPNMA YKVKVLAKPH ENSBTAP00000036905/1-1311 SWLPTNSNYS HVIFLNEQEL DVVRAARYKY QFCNLRPNMA YKVKVLAKPH bmy_17973T0/1-1284 SWAPANSNYS HVIFLNEQEL DVVRAASYKY QFCNLRPNAA YKVKVLAKPH BACU013683/1-1354 SWAPANSNYS HAIFLNEQEL DVVRAASYKY QFCNLRPNAA YKVKVLAKPH 601 650 ENSTTRP00000016113/1-1016 QVPW-LPLEQ RERKEAFVEF -TLPA-XXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261655/1-1052 QMPWQLPLEQ REKKEAFVEF STLPAGPPAP PQDVTVQAGV TPATIRVSWR ENSBTAP00000036905/1-1311 QMPWQLPLEQ RERKEAFVEF STLPAGPPAP PQDVAVQAGA TPATVQVSWR bmy_17973T0/1-1284 QMPWQLPLEQ RERKEAFVEF STLPAGPPAP PQDIAVQATA TPGTVQVSWK BACU013683/1-1354 QLPWQLPLEQ RDRKEAFVEF STLPAGPPAP PQDIAVQAAA TPGTVQVSWK 651 700 ENSTTRP00000016113/1-1016 XXXXXXXXXX XXXXXXXXXX XXXXXXVAEI ISPTADSTAV ELVRLRSLEA ENSP00000261655/1-1052 PPVLTPTGLS NGANVTGYGV YAKGQRVAEV IFPTADSTAV ELVRLRSLEA ENSBTAP00000036905/1-1311 PPALTATGLS NGANVTGYGV YAKGQRVAEI ISPTADGTAV ELVRLRSLEA bmy_17973T0/1-1284 PPALTATGLS NGANVTGYGV YANGQRVAEI ISPTADGTAV ELVRLRSLEA BACU013683/1-1354 PPALTATGLS NGANVTGYGV YAKGQRVAEI ISPTADGTAV ELVRLRSLEA 701 750 ENSTTRP00000016113/1-1016 KGVTVRTLSA QGESVDSATA AIPPDLLVPP APHLRTAPTP KPLANAGAPD ENSP00000261655/1-1052 KGVTVRTLSA QGESVDSAVA AVPPELLVPP TPHPRPAPQS KPLASSGVPE ENSBTAP00000036905/1-1311 KGVTVRTLSA QGESVDSAVA AIPPDLLVPP TPHPRTAPTP KPLASAGAPE bmy_17973T0/1-1284 KSVTVRTLSA QGESVDSAAA AIPPDLLVPP APHLRTAPTP KPLASAGAPD BACU013683/1-1354 KSVTVRTLSA QGESVDSAAA AIPPDLL--- ---------- ---------- 751 800 ENSTTRP00000016113/1-1016 TKDEHLGPHA AAHEAWELGR APAPAHGHLL EPPGLQGSGP GRRSPSPSRI ENSP00000261655/1-1052 TKDEHLGPHA RMDEAWEQSR APGPVHGHML EPP----VGP GRRSPSPSRI ENSBTAP00000036905/1-1311 TKDEHLGPHA AVDEAWEHGR APTPAHGHLL EPPGLQGSGP GRRSPSPSRI bmy_17973T0/1-1284 TKDEHLGPHA AADEAWELGR APAPAHGHLL EPPGLQDSGP GRRSPSPSRI BACU013683/1-1354 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000016113/1-1016 LPQPQGAPVS TSVAKAMARE AAQRVAESSR LEKRSVFLDR SS-GQYANSD ENSP00000261655/1-1052 LPQPQGTPVS TTVAKAMARE AAQRVAESSR LEKRSVFLER SSAGQYAASD ENSBTAP00000036905/1-1311 LPQPQGVPVS TSVAKAMARE AAQRVAESSR LEKRSIFLER SS-GQYANSD bmy_17973T0/1-1284 LPQPQGVPVS TSVAKAMARE AAQRVAESSR LEKRSIFLER SS-GQYANSD BACU013683/1-1354 ---PQGAPVS TSVAKAMARE AAQRVAESSR LEKRSIFLER SS-GQYANSD 851 900 ENSTTRP00000016113/1-1016 EEDSYESPDA KRRGASVDEF LKGSELGKPP HCCHGDEYHT ESSRGSDLSD ENSP00000261655/1-1052 EEDAYDSPDF KRRGASVDDF LKGSELGKQP HCCHGDEYHT ESSRGSDLSD ENSBTAP00000036905/1-1311 EEDGYESPDV KRRGASVDEF LKGSELGKPP HCCHGDDYHT ESSRGSDLSD bmy_17973T0/1-1284 EEDGYESPDV KRRGASVDEF LKGSELGKPP HCCHGDEYHT ESSRGSDLSD BACU013683/1-1354 EEDGYESPDV KRRGASVDEF LKGSELGKPP HCCHGDEYHT ESSRGSDLSD 901 950 ENSTTRP00000016113/1-1016 IMEEDEEELC SEMQLEDAAR RRPGGAARSA LK-------- ---------- ENSP00000261655/1-1052 IMEEDEEELY SEMQLEDGGR RRPSGTSHNA LK-------- ---------- ENSBTAP00000036905/1-1311 IMEEDEEELY SEMQLEDGGR RRPSGTSHNA LKECSKNRTT ERAFSELPEY bmy_17973T0/1-1284 IMEEDEEELY SEMQLEDGGR RRPSGTSHNA LKECSKNRTT ERAFLELPEY BACU013683/1-1354 IMEEDEEELY SEMQLEDGGR RRPSGTSHNA LKECSKNRTT ERAFLELPEY 951 1000 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036905/1-1311 PQQTHHSKRL FSIPEVAEED GEPCEFLHKQ GLGASSRVRT GLAREPRPAR bmy_17973T0/1-1284 PQQTHHSKKL FSIPEVAEED GEPCEFSYKQ GLGVSSRART RLAREPRPTR BACU013683/1-1354 PQQTHHSKKL FSIPEVAEED GEPCEFSYKQ GVGVSSRART RLAREPRPAR 1001 1050 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036905/1-1311 PCRGHEALHG SWYPTKPRGP QAEDFIFEDR GCRFSRAATR SPDSGLDCGS bmy_17973T0/1-1284 PCRGHEAPLG SRVPAKPRAP RAEDFVFEDR GCRFSHSATR SPDSGLDCGS BACU013683/1-1354 PCRGHEAPLG SRVPAKPRGP RAEDFVFEDR GCRFSRSAAR SPDSGLDCGS 1051 1100 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036905/1-1311 EEEEMRFSFR SPTAQCSPGP GHCPCRRSLR PLLARRRTLT RQSSIEEDFG bmy_17973T0/1-1284 EEEETRFSFR SPAAKCSPGP GHCPCRTSLR PLLARRRTLT RQSSIEEDSG BACU013683/1-1354 EEEETRFSFR SAAAQCSPGP GRCPCWRGLR PLLARRRTLT RQSSVEEDSG 1101 1150 ENSTTRP00000016113/1-1016 ---------- ---------- ---------- ---------- ---------- ENSP00000261655/1-1052 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000036905/1-1311 EPVEPGDVVR SDEPHPSPER STPSKYGWDE PTGREDFRDA WKKSIKMPDS bmy_17973T0/1-1284 EPVEAGHVVR SNEAQPSPER STPSKYSWDE PGGHEDFRDV WKKSIKITFA BACU013683/1-1354 EPAEAGHVVR SDEAQPSPER SAPSKYSWDE PGGREDFRDV WKKSIKMSDS 1151 1200 ENSTTRP00000016113/1-1016 ---------- --------IL GNPVTAGRAD RVDHVGRRFP HGSASRHRSR ENSP00000261655/1-1052 ---------- --------IL GNPASAG--- RVDHMGRRFP RGSAGPQRSR ENSBTAP00000036905/1-1311 RAIARQAQPP PRVADGPLIL GNPVTAGRAD RADHVGRRFS HGSAGSHRSR bmy_17973T0/1-1284 PVMLNFSMKT Q-------IL GNPVTAGRAD RVDLVGRRFP HGSAGRHRSR BACU013683/1-1354 RASARHAQPP PRVADGPLIL GNPVTAGRAD RVDLVGRRFP HGSAGRHRSR 1201 1250 ENSTTRP00000016113/1-1016 PMMVPSADEY GGRNRLSPDF YEESETDPGA EELPPRIFVA LFDYDPLTMS ENSP00000261655/1-1052 PVTVPSIDDY -GRDRLSPDF YEESETDPGA EELPARIFVA LFDYDPLTMS ENSBTAP00000036905/1-1311 PMMVHAADEY -GRDRLSPDF YEESETDPGA EELPARIFVA LFDYDPLTMS bmy_17973T0/1-1284 PTMVPSADEY GGRNRLSPDF YEGSETDPGA EELPPRIFVA LFDYDPLTMS BACU013683/1-1354 PTMVPSADEY GGRNRLSPDF YEESETDPGA EELPPRIFVA LFDYDPLTMS 1251 1300 ENSTTRP00000016113/1-1016 PNPDAAEEEL PLKKGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261655/1-1052 PNPDAAEEEL PFKEGQIIKV YGDKDADGFY RGETCARLGL IPCNMVSEIQ ENSBTAP00000036905/1-1311 PNPDAAEEEL PFKEGQIIKV YGDKDADGFY RGETCARLGL IPCNMVSEIQ bmy_17973T0/1-1284 PNPDAAEEEL PFKEGQIIKV YGDKDADGFY RGETCARLGL IPCNMVSEIQ BACU013683/1-1354 PNPDAAEEEL PFKEGQIIKV YGDKDADGFY RGETCARLGL IPCNMVSEIQ 1301 1350 ENSTTRP00000016113/1-1016 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261655/1-1052 ADDEEMMDQL LRQGFLPLNT PVEKIERSRR SGRRHSVSTR RMVALYDYDP ENSBTAP00000036905/1-1311 ADDEEMMDQL LRQGFLPLNT PVEKIERNRR SGRQHSVSTR RMVALYDYDP bmy_17973T0/1-1284 ADDEEVMDQL LRQGFLPLNT PVEKIERNRR SSRQRSVATR RMVALYDYDP BACU013683/1-1354 ADDEEVMDQL LRQGFLPLNT PVEKIERNRR SSRQRSVATR RMVALYDYDP 1351 1400 ENSTTRP00000016113/1-1016 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261655/1-1052 RESSPNVDVE AELTFCTGDI ITVFGEIDED GFYYGELNGQ KGLVPSNFLE ENSBTAP00000036905/1-1311 RESSPNIDVE AELTFCTGDI ITVFGEIDED GFYYGELNGQ KGLVPSNFLE bmy_17973T0/1-1284 RESSPNIDVE AELTFCTGDI ITVFGEIDED GFYYGELNGQ KGLVPSNFLE BACU013683/1-1354 RESSPNIDVE AELTFCTGDI ITVFGEIDED GFYYGELNGQ KGLVPSNFLE 1401 1450 ENSTTRP00000016113/1-1016 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK KSVH----FT P--------- ENSP00000261655/1-1052 EVPDDVEVYL SDAPSHYSQD TPMRSKAKRK KSVH----FT P--------- ENSBTAP00000036905/1-1311 EVPDDVEVYL SDAPSHYSQD MPMRSKTKRK KSVH----FT P--------- bmy_17973T0/1-1284 EVPDDVEVYL SDAPSHYPQD TPTRSKTKRK KSVH----FT P--------- BACU013683/1-1354 EVPDDVEVYL SDAPSHYPQD TPTRSKTKRV QGCADSLSFA ATIVDDVFLS 1451 1500 ENSTTRP00000016113/1-1016 -- ENSP00000261655/1-1052 -- ENSBTAP00000036905/1-1311 -- bmy_17973T0/1-1284 -- BACU013683/1-1354 LQ