KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:50 2014 Check: 00 .. Name: ENSP00000355719/1-326 Len: 330 Check: 6917 Weight: 1.00 Name: ENSBTAP00000036408/1-327 Len: 330 Check: 5521 Weight: 1.00 Name: bmy_03333T0/1-171 Len: 330 Check: 8173 Weight: 1.00 Name: BACU002928/1-328 Len: 330 Check: 6259 Weight: 1.00 Name: ENSTTRP00000006373/1-268 Len: 330 Check: 5889 Weight: 1.00 // 1 50 ENSP00000355719/1-326 --MAAPASVM GPLG--PSAL GLLLLLLVVA PPRVAALVHR QPENQGISLT ENSBTAP00000036408/1-327 --AALTGPHP GPVESWPTTP SLFLLLFLLP PTQVEATAHR HPASEEVAFS bmy_03333T0/1-171 ---------- ---------- ---------- ---------- ---------- BACU002928/1-328 MAAALTGPRT GPGE--STTP ILLLLLFLLP HTQAAATAPR HPASEGVAFS ENSTTRP00000006373/1-268 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000355719/1-326 GSVACGRPSM EGKILGGVPA PERKWPWQVS VHYAGLHVCG GSILNEYWVL ENSBTAP00000036408/1-327 RDVACGQRHV QGKILGGVDA LEGKWPWQAS VHFVGFHICG GSIIDEYWIL bmy_03333T0/1-171 ---------M QGKIMGGVDT LEKKWPWQVS VHYAGFHICG GSIIDEYWIL BACU002928/1-328 RDVACGQRHM QGKIMGGVDT LEKKWPWQVS VHYAGFHICG GSIIDEYWIL ENSTTRP00000006373/1-268 ---------- -GRIMGGVDT HE-KMPWQVS VHYAGFHICG GSIIDEYWIL 101 150 ENSP00000355719/1-326 SAAHCFHRDK NIKIYDMYVG LVNLRVAGNH TQWYEVNRVI LHPTYEMYHP ENSBTAP00000036408/1-327 SAAHCFDRNR NTEAFDMYVG LVDLNVAGNH TQWFEVNRVI IHPTYELYHP bmy_03333T0/1-171 SAAHCFDRNK ITEAFDIYVG LVDLRVAGNH TQWFEVNKVI IHPTYEVYHP BACU002928/1-328 SAAHCFDRNK ITEAFDIYVG LVDLRVAGSH TQWFEVNKVI IHPTYKVYHP ENSTTRP00000006373/1-268 SAAHCFGRNK VIEAFDMYVG LVDLRVAGNH TQWFEVNKVI IHPTYEMYHP 151 200 ENSP00000355719/1-326 IGGDVALVQL KTRIVFSESV LPVCLATPEV NLTSANCWAT GWGLVSKQGE ENSBTAP00000036408/1-327 VGGDIALVQL KTRIVFSDSV LPICIAPPDL TLWNLSCWAT GWGSISRKGD bmy_03333T0/1-171 VGGDIALVQL KTRIVFSDSV LPICIAPPDV TLTNLSCWAT GWGSISQQGK BACU002928/1-328 VGGDIALVQL KTRIVFSDSV LPICIAPPDV TLSNLSCWAT GWGSISQQGD ENSTTRP00000006373/1-268 VGGDIALVQL KTRIVFSDSV LPICIAPPDV TLSNLSCWAT GWGSISQQGD 201 250 ENSP00000355719/1-326 TSDELQEMQL PLILEPWCHL LYGHMSYIMP DMLCAGDILN AKTVCEGDSG ENSBTAP00000036408/1-327 TSNKLQEVQL PLVPFHLCRL LYGQTD-ILP DMLCAGNFKD MKTACEGDSG bmy_03333T0/1-171 KTK------- -------CR- ---------- -------VDP IIGACGRDDG BACU002928/1-328 TSDKLQEVQL PLIPLRLCQL LYGHTSYILS DMLCAGDLRD MKTACEGDSG ENSTTRP00000006373/1-268 TSDKLQEVQL PLVPLPLCQM LYGHTSYILP DMLCAGDLRN MKTACEGDSG 251 300 ENSP00000355719/1-326 GPLVCEFNRS WLQIGIVSWG RGCSNPLYPG VYASVSYFSK WICDNIEITP ENSBTAP00000036408/1-327 GPLVCEFDRT WVQIGVVSWG QGCAYPMYPT VFARVSFFSK WIHHHIENTP bmy_03333T0/1-171 SMTLQE---- ---------- RTCSVH---- ---------- ---------- BACU002928/1-328 GPLVCEFNHT WMQIGVVSWG HGCTYPMYPA VYARVSFFSE WIRYHVENTP ENSTTRP00000006373/1-268 GPLVCEFNST WMQIGVVSWG RGCTYPMYPA VYARVSFFSE WIRYHIENTP 301 350 ENSP00000355719/1-326 TPAQPAPALS PALGPTLSVL MAMLAGWSVL ENSBTAP00000036408/1-327 LPLQPLPALS STLGAIISVL MTSLAAPSML bmy_03333T0/1-171 ---------- ---------- ---------- BACU002928/1-328 LPLQPLPTLS SALGAAINVL VTSLAVLSML ENSTTRP00000006373/1-268 LPLQPLPTLS STLGAAINVL VTSLAVLSML