KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:46:05 2014  Check: 00 ..

 Name: bmy_00053T0/1-185         Len:    218  Check:  7548  Weight:  1.00
 Name: BACU019156/1-211          Len:    218  Check:  5545  Weight:  1.00
 Name: ENSTTRP00000005992/1-211  Len:    218  Check:  5919  Weight:  1.00
 Name: ENSBTAP00000035859/1-204  Len:    218  Check:  3983  Weight:  1.00
 Name: ENSP00000361650/1-204     Len:    218  Check:  4602  Weight:  1.00

//


                          1                                                   50
bmy_00053T0/1-185         MLAASRTSP- ISALAFLPGP YKNQGKNW-- ---------- ---------H 
BACU019156/1-211          ---MSWTCPR CQQPVFFAEK VSSLGKNWHP FCLKCERCHS VLSPGGHAEH 
ENSTTRP00000005992/1-211  ---MSWTCPR CQQPVFFAEK VSSLGKNWHP FCLKCEHCHS VLSPGGHAEH 
ENSBTAP00000035859/1-204  ---MSWTCPR CQQPVFFAEK VSSLGKNWHP FCLKCEHCHS VLSPGGHAEH 
ENSP00000361650/1-204     ---MSWTCPR CQQPVFFAEK VSSLGKNWHR FCLKCERCHS ILSPGGHAEH 


                          51                                                 100
bmy_00053T0/1-185         NGRPYCHKPC YGALFGPRGV NIGGVGSYLY KSPTPTPASA TPLSPSRFSP 
BACU019156/1-211          NGRPYCHKPC YGALFGPRGV NIGGVGSYLY KSPTPTPASA TPLSPSGFSP 
ENSTTRP00000005992/1-211  NGRPYCHKPC YGALFGPRGV NIGGVGSYLY NCPTPTPASA TPLSPSSFSP 
ENSBTAP00000035859/1-204  NGRPYCHKPC YGALFGPRGV NIGGVGSYLY KPPTPTPASI THLSPSSFSP 
ENSP00000361650/1-204     NGRPYCHKPC YGALFGPRGV NIGGVGSYLY NPPTPSPGCT TPLSPSSFSP 


                          101                                                150
bmy_00053T0/1-185         PRPRTGLPQG KKSPPHMKTF TGETSLCPGC KEPVYFAEKV MSLGRNWHRP 
BACU019156/1-211          PRPRTGLPQG KKSPPHMKTF TGETSLCPGC KEPVYFAEKV MSLGRNWHRP 
ENSTTRP00000005992/1-211  PRPRTGLPQG KKNPPHTKTF R-DTSLRPGC KEPVYFAEKV MSLGRNWHRP 
ENSBTAP00000035859/1-204  PRPRTGLPQG KKSPPHMKTF TGETSLCPGC EEPVYFAETV MSLGRNWHRP 
ENSP00000361650/1-204     PRPRTGLPQG KKSPPHMKTF TGETSLCPGC GEPVYFAEKV MSLGRNWHRP 


                          151                                                200
bmy_00053T0/1-185         CLRCQRCRKT LTAGSHAEHD GVPYCHIPCY GYLFGPKG-- ---------V 
BACU019156/1-211          CLRCQRCRKT LTAGSHAEHD GVPYCHIPCY GYLFGPKGGQ PHPRQW-KVW 
ENSTTRP00000005992/1-211  CLRCQRCRKT LTAGSHAEHD GVPYCHIPCY GYLFGPKGGQ PHPKQWPKVW 
ENSBTAP00000035859/1-204  CLRCQRCRKT LTAGSHAEHD GAPYCHIPCY GYLFGPKG-- ---------V 
ENSP00000361650/1-204     CLRCQRCHKT LTAGSHAEHD GVPYCHVPCY GYLFGPKG-- ---------V 


                          201                                                250
bmy_00053T0/1-185         NIGDVGCYIY DPVEIKSK 
BACU019156/1-211          HVGLWGCVDN FPCGQ--- 
ENSTTRP00000005992/1-211  HVGLWGCVDN FPCGQ--- 
ENSBTAP00000035859/1-204  NIGDVGCYIY DPVEIKSK 
ENSP00000361650/1-204     NIGDVGCYIY DPVKIKFK