KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:02 2014 Check: 00 .. Name: ENSP00000377424/1-456 Len: 500 Check: 3824 Weight: 1.00 Name: ENSBTAP00000035821/1-456 Len: 500 Check: 1847 Weight: 1.00 Name: ENSTTRP00000006542/1-367 Len: 500 Check: 6483 Weight: 1.00 Name: bmy_00032T0/1-280 Len: 500 Check: 3205 Weight: 1.00 Name: BACU015817/1-419 Len: 500 Check: 6251 Weight: 1.00 // 1 50 ENSP00000377424/1-456 ---------- ---MTTSHQP QDR------- ---------- ---------- ENSBTAP00000035821/1-456 ---------- ---MTTSHQP QDR------- ---------- ---------- ENSTTRP00000006542/1-367 ---------- ---MTTSHQP QDR------- ---------- ---------- bmy_00032T0/1-280 ---------- ---------- ---------- ---------- ---------- BACU015817/1-419 MPTLLLPLLL RTLLARLLLP AARLAPLHFL PLLRRLAHRL GSQDMREALL 51 100 ENSP00000377424/1-456 ----YKAVWL IFFMLGLGTL LPWNFFMTAT QYFTNRLDMS QNVSLVTAEL ENSBTAP00000035821/1-456 ----YKAVWL IFFILGLGTL LPWNFFMTAT KYFTNRLDMS QNMSLGPAEV ENSTTRP00000006542/1-367 ----YKAVWL IFFMLGLGTL LPWNFFMTAT AYFTNRLDMS QNASLVPAEP bmy_00032T0/1-280 ---------- ---------- ---------- ---------- ---------- BACU015817/1-419 GCLLYKAVWL IFFMLGLGTL LPWNFFMTAT ---------- --ASGSISDP 101 150 ENSP00000377424/1-456 SKDAQASAAP AAPLPERNSL SAIFNNVMTL CAMLPLLLFT YLNSFLHQRI ENSBTAP00000035821/1-456 SKDIQASASP LAPSPERTHL STIFNNVMTL CAMVPLLIFT CLNSFLHQRI ENSTTRP00000006542/1-367 SEDVQASAGP SAPLPERSYL SAIFNNVMTL CAMLPLLLFT CLNSFLHQRI bmy_00032T0/1-280 ---------- ---------- ---------- ---------- ---------- BACU015817/1-419 SKDIQASASP SAPSPERNYL SAIFNNVMTL CAMLPLLLFT CLNSFLHQRI 151 200 ENSP00000377424/1-456 PQSVRILGSL VAILLVFLIT AILVKVQLDA LPFFVITMIK IVLINSFGAI ENSBTAP00000035821/1-456 PQSVRILGGL VAILLVFLIT AILVKVPLHA LSFFVITMLK IMLINSFGAI ENSTTRP00000006542/1-367 PQAVRILGSL VAILLVFLIT AILVKVPMDA LPFFVVTMMK IMLINSFGAI bmy_00032T0/1-280 ---------- ---------- ---------- ---------- ---------- BACU015817/1-419 PQSVRILGSL VAILLVFLIT AILVKVPLDA PPFFVITMIK ITFINSFGAI 201 250 ENSP00000377424/1-456 LQGSLFGLAG LLPASYTAPI MSGQGLAGFF ASVAMICAIA SGSELSESAF ENSBTAP00000035821/1-456 LQGSLFGLAG LLPASYTAPI MSGQGLAGFF ASVAMICAIA SGSELSESAF ENSTTRP00000006542/1-367 LQGSLFGLAG LLPASYTAPI MSGQGLAGFF ASVAMICAIA SGSELSESAF bmy_00032T0/1-280 ---------- ---------- MSGQGLAGFF ASVAMICAIA SGSELSESAF BACU015817/1-419 LQGSLFGLAG LLPASYTAPI MSGQGLAGFF ASVAMICAIA SGSELSESAF 251 300 ENSP00000377424/1-456 GYFITACAVI ILTIICYLGL PRLEFYRYYQ QLKLEGPGEQ ETKLDLISKG ENSBTAP00000035821/1-456 GYFITACGVI ILTIICYLGL PRLEFYRYYR QLKLEGPGEQ ETKLDLISKG ENSTTRP00000006542/1-367 GYFITACGVI ILTIACYLGL PRLEFYRYYQ QLKLEGPREQ ETKLDLISKG bmy_00032T0/1-280 GYFITACGVI ILTIACYLGL PRLEFYRYYQ QLKLEGPGEQ ETKLDLISKG BACU015817/1-419 GYFITACGVI ILTIACYLGL PRLEFYRYYQ QLKLEGPGEQ ETKLDLISKG 301 350 ENSP00000377424/1-456 EEPRAGKEES GVSVSNSQPT NESHSIKAIL KNISVLAFSV CFIFTITIGM ENSBTAP00000035821/1-456 EESKAGQEET GFSAPSSQPA KESHSVRAIL KSILVPAFSV CFVFTITIGI ENSTTRP00000006542/1-367 DKSKAGQEEA GVSAPNSQPA DGSHSVCAIL KNILVPALSV CFVFTITIGM bmy_00032T0/1-280 EESKAGQEEA GVSAPNSQPA NESHSVCTIL RNILVPALSV CFVFTITIGM BACU015817/1-419 D--------- ---------- ---------- ---------- ---------- 351 400 ENSP00000377424/1-456 FPAVTVEVKS SIAGSSTWER YFIPVSCFLT FNIFDWLGRS LTAVFMWPGK ENSBTAP00000035821/1-456 FPAVTAEVES TIAGTSAWKA YFIPVSCFLT FNVFDWLGRS LTAITMWPGK ENSTTRP00000006542/1-367 FPAVAAEVKS SIAGTSAWRD YFIPVSCFLT FNIFDWLGRS LTAFTMWPGK bmy_00032T0/1-280 FPAVAAEVKS SIAGTSAWRD YFIPVSCFLT FNIFDWLGRS LTAFTMWPGK BACU015817/1-419 ---------- ---------- YFIPVSCFLT FNIFDWLGRS LTAFTMWPGK 401 450 ENSP00000377424/1-456 DSRWLPSLVL ARLVFVPLLL LCNIKPRRYL TVVFEHDAWF IFFMAAFAFS ENSBTAP00000035821/1-456 DSYWLPSLVL ARLAFVPLLL LCNVQPRRNL PVVFEHDSWF IIFMAAFAFS ENSTTRP00000006542/1-367 DSRWLPILVL A--------- ---------- ---------- ---------- bmy_00032T0/1-280 DSRWLPILVL ARLAFVPLLL LCNVHPRHNL AVVFEHDAWF IFFMAAFAFS BACU015817/1-419 DSRWLPILVL ARLAFVPLLL LCNVHPRHNL AVVFEHDAWF IFFMAAFAFS 451 500 ENSP00000377424/1-456 NGYLASLCMC FGPKKVKPAE AETAGAIMAF FLCLGLALGA VFSFLFRAIV ENSBTAP00000035821/1-456 NGYLASLCMC FGPKKVKPAE AETAGAIMAF FLSLGLALGA VFSFLFRAIV ENSTTRP00000006542/1-367 ---------- ---------- ---------- ---------- ---------- bmy_00032T0/1-280 NGYLASLCMC FGPKKVKPAE AETAGAIMAF FLSLGLALGA IFSFLFRAIV BACU015817/1-419 NGYLASLCMC FGPKKVKPAE AETAGAIMAF FLSLGLALGA IFSFLFRAIV