KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:46:00 2014 Check: 00 .. Name: ENSP00000283296/1-1346 Len: 1390 Check: 8826 Weight: 1.00 Name: ENSBTAP00000035796/1-1343 Len: 1390 Check: 1626 Weight: 1.00 Name: ENSTTRP00000008016/1-1342 Len: 1390 Check: 394 Weight: 1.00 Name: bmy_00009T0/1-1302 Len: 1390 Check: 451 Weight: 1.00 Name: BACU015835/1-1383 Len: 1390 Check: 6172 Weight: 1.00 // 1 50 ENSP00000283296/1-1346 MKSPRRTTLC LMFIVIYSSK AALNWNYEST IHPLSLHEHE PAGEEALRQK ENSBTAP00000035796/1-1343 MKSPKRTTLC FVIIAIYSSQ ATLSLNLESI VYHSLLHEHE LMEEDPVRQK ENSTTRP00000008016/1-1342 MKSPRRTTLC FMIIVIFSSQ ATLNLNLESI VYPSLLHEHE LAGEDPIRQK bmy_00009T0/1-1302 ---------- ---------- ---------- MFFQLLREHE LAGEDPVRQK BACU015835/1-1383 MKSPRRTTLC FMIIVIVSSQ ATLNLNFESI VYPSLLHEHE LAGEDPVRQK 51 100 ENSP00000283296/1-1346 RAVATKSPTA EEYTVNIEIS FENASFLDPI KAYLNSLSFP IHGNNTDQIT ENSBTAP00000035796/1-1343 RAVAISSPAA QEFTVDVEIS FENASFLEPI KAYLNNLSFP IQGNDTDLAT ENSTTRP00000008016/1-1342 RAAAVSSPAA QEFTVNVEVS FEDASFLEPS KAYLKNLSFP VQGDDADPAT bmy_00009T0/1-1302 RAVAMSSPAA QEFTVDVEVS FEDASFLELS KAYLNNLSFP VQGDDTDPAT BACU015835/1-1383 RAVAMSRPAA QEFTVDVEVS FEDASFLELS KAYLNNLSFP VQGDDTDPAT 101 150 ENSP00000283296/1-1346 DILSINVTTV CRPAGNEIWC SCETGYGWPR ERCLHNLICQ ERDVFLPGHH ENSBTAP00000035796/1-1343 DILSIEVSTV CRPTGNEIWC SCETGYEWPQ ESCLHNLTCQ GHDGSSAGHH ENSTTRP00000008016/1-1342 SILSIEVTTV CRPTGNEVWC SCEKGYKWPQ EKCLHNLTCQ GRDGSPSGHH bmy_00009T0/1-1302 NILSIEVTTV CRPTGNEIWC SCEKGYKWPQ ERCLHNLTCQ GHDGSPSGHH BACU015835/1-1383 NILSIEVTTV CRPTGNETWC SCEKGYKWPQ ERCLHNLTCQ GHDGFPSGHH 151 200 ENSP00000283296/1-1346 CSCLKELPPN GPFCLLQE-D VTLNMRVRLN VGFQEDLMNT SSALYRSYKT ENSBTAP00000035796/1-1343 CSCLKGLPPK GPFCQLQG-D IILRMSVRLN VGFQEDLKNS SSALYKSYKT ENSTTRP00000008016/1-1342 CSLLKGLPPK GPFCQLQG-D ITLRMSVRLN VGFQEELKNS SSALYRSYKT bmy_00009T0/1-1302 CSCLKGLPPK GPFCQLQGAD ITLRMSVRLN VGFQEELRNS SSALYRSYKT BACU015835/1-1383 CSCLKGLPPK GPFCQLQGAD ITLRMSVRLN VGFQEELRNS SSALYRSYKT 201 250 ENSP00000283296/1-1346 DLETAFRKGY GILPGFKGVT VTGFKSGSVV VTYEV-KTTP PSLELIHKAN ENSBTAP00000035796/1-1343 DLETAFWKGY SILPGFKLVT VTGFRPGSVV VTYEITTTTT ASPALMRKAN ENSTTRP00000008016/1-1342 DLETAFWKGY SILPGFKLVT VTEFRPGSVV VVYEV-TTTA ASPELMRKAN bmy_00009T0/1-1302 DLETAFREGY SILPGFKLVT VTEFRPGSVV VVYEV-TTTA ASPELMRKAN BACU015835/1-1383 DLETAFREGY SILPGFKLVT VTEFRPGSVV VVYEV-TTSA ASPELMRRAN 251 300 ENSP00000283296/1-1346 EQVVQSLNQT YKMDYNSFQA VTINESNFFV TPEIIFEGDT VSLVCEKEVL ENSBTAP00000035796/1-1343 EKVTQNLNQT YKMESSSYQV TYSNETKFSI TPEIIFEGDT VTLMCENEVF ENSTTRP00000008016/1-1342 EQVTQNLRQT YKMDSSSFQV TYSNETKFSI TPEIIFEGDT VTLMCENEVL bmy_00009T0/1-1302 EQVTQNLNQT YKMDSNSFQV TYSNETKLSI TPEIILEGDT VTLMCENEVL BACU015835/1-1383 EQVTQNINQT YKMDSSSFQV TYSNETKFSI TPEIILEGDT VTLMCENEVL 301 350 ENSP00000283296/1-1346 SSNVSWRYEE QQLEIQNSSR FSIYTALFNN MTSVSKLTIH NITPGDAGEY ENSBTAP00000035796/1-1343 STNVSWTQGE TGLDIQNSTE VSIYTSVLNN MTSVSRLIIH NITRGFMGEY ENSTTRP00000008016/1-1342 SSNVSWQHVE Q-FDIQNSSR FSIYTYVLNN MTSVSRLTIY NITQDDAGEY bmy_00009T0/1-1302 SSNVSWQHVE TGFDIQNSSR FSIYTYVLNN MTSVSRLTIY NITQDDAGEY BACU015835/1-1383 SSNVSWQHVE TGFDVQNSSR FSVYTYVLNN MTSVSRLTIY NITQDDAGEY 351 400 ENSP00000283296/1-1346 VCKLILDIFE YECKKKIDVM PIQILANEEM KVMCDNNPVS LNCCSQGNVN ENSBTAP00000035796/1-1343 ICKLTLDIFE YASKRKVEVI PIQILASEAT EVMCDNNPVS LHCCSEVNVN ENSTTRP00000008016/1-1342 ICKLTLDIFE YGSRKKIDVT SIQIWANEDM KVMCDNSPVS LNCCSEMTVN bmy_00009T0/1-1302 ICKLTLDIFE YGSRKKIDVT SIQILATEDM KVMCDNNPVC LSCCSEMTVN BACU015835/1-1383 ICKLTLDIFE YGSRKKIDVT SIQILANEDM KVMCDNNPVS LSCCSEMTVN 401 450 ENSP00000283296/1-1346 WSKVEWKQEG KINIPGTPET DIDSSCSRYT LKADGTQCPS GSSGTTVIYT ENSBTAP00000035796/1-1343 WSQIEWKQEG SISVPGNAEI DTDSGCSRYT LVANGTQCPS GSSGTTVVYT ENSTTRP00000008016/1-1342 WSQVEWKQQG SVSIPGSPET DADPRCSRYT LTANGTQCPS RLSGTTVIYT bmy_00009T0/1-1302 WSQVEWKQEG TINIPGSPET DTDSGCSRYT LTADGTQCPS GLSGTTVVYT BACU015835/1-1383 WSQVEWKQEG TINIPGSPET DTDSGCSRYT LTADGTQCPS GLSGTTVVYT 451 500 ENSP00000283296/1-1346 CEFISAYGAR GSANIKVTFI SV-------- ---------- ---------- ENSBTAP00000035796/1-1343 CEFISAHGAR GRKDIEVTFM SV-------- ---------- ---------- ENSTTRP00000008016/1-1342 CEFISAHGAR GSKDIKVTFI SV-------- ---------- ---------- bmy_00009T0/1-1302 CEFISAHGAR GSKDIKVTFT SVGDNSSHKG EVHEFPRHVM EMGTVQSTTE BACU015835/1-1383 CEFISAHGAR GSKDIKVTFT SVGDNSSHKG EVREFPRHVM EMGTVQSTTE 501 550 ENSP00000283296/1-1346 ---------- --ANLTITPD PISVSEGQNF SIKCISDVSN YDEVYWNTSA ENSBTAP00000035796/1-1343 ---------- --AKLNITPD LISVSEGQSF FIKCISDMSN YDEMYWNTSA ENSTTRP00000008016/1-1342 ---------- --ANLKITPD PISVSEGQSF SIKCISDMSN YDEVYWNTSA bmy_00009T0/1-1302 NSLETSKAPE QQANLKITPD PISVSEGQSF SIKCISDVSN YDEVYWNTSA BACU015835/1-1383 NSLETSKAPE QQANLKITPD PISVSEGQSF SIKCISDVSN YDEVYWNTSA 551 600 ENSP00000283296/1-1346 GIKIYQRFYT TRRYLDGAES VLTVKTSTRE WNGTYHCIFR YKNSYSIATK ENSBTAP00000035796/1-1343 GTKIYKRFYT TRRYPDRAES VLTVKTSTRE WNGTYHCVFR YKNLYRVMAK ENSTTRP00000008016/1-1342 GIKIYKRFYT TRRYPDGAES VLTVKTSTRE WNGTYHCIFR YKNSYSVMAK bmy_00009T0/1-1302 GIKIYKRFYT TRRYPNGAES VLTVKTSTRE WNGTYHCIFR YKNSYSVMAK BACU015835/1-1383 GIKIYKRFYT TRRYPNGAES VLTVKTSTRE WNGTYHCIFR YKNSYSVMAK 601 650 ENSP00000283296/1-1346 DVIVHPLPLK LNIMVDPLEA TVSCSGSHHI KCCIEEDGDY KVTFHTGSSS ENSBTAP00000035796/1-1343 DVIVYPLPLE SNIMVDPVEA AIPCHSSHHI RCCIEEDSDY RVIFQVGSSS ENSTTRP00000008016/1-1342 DVTVHPLPLQ PNIMVDPLEA AIPCTSSRHI KCCIEEDRDY KVIFQAGSSS bmy_00009T0/1-1302 DVTVHPLPLE PDIMVDPLEA VIPCTSSRHI KCCIEEDRDY KVIFQAGSSS BACU015835/1-1383 DVTVHPLPLE PDIMVDPLEA VIPCTSSRHI KCCIEEDRDY KVIFQAGSSS 651 700 ENSP00000283296/1-1346 LPAAKEVNKK QVCYKHNFNA SSVSWCSKTV DVCCHFTNAA NNSVWSPSMK ENSBTAP00000035796/1-1343 FPAVKEVNEK QVCYKHHFVA DSVS-CPENV DVFCHFANAA NNSVQSPSMK ENSTTRP00000008016/1-1342 FPAXXXXXXX XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX XXXXXXXXXX bmy_00009T0/1-1302 FPA------- ---------- ---------- ---------- ---------- BACU015835/1-1383 FPAAKEVNGK QVCYKHHFVA NSIS-CPENM DVFCHITNTA NNSVRSPSMK 701 750 ENSP00000283296/1-1346 LNLVPGENIT CQDPVIGVGE PGKVIQKLCR FSNVPSSPES PIGGTITYKC ENSBTAP00000035796/1-1343 LNLVPGESIT CQDPILGVGE PGKVIQKLCR FSNITRSRES PIGGIITYRC ENSTTRP00000008016/1-1342 XXXXXXXNVT CQDPIIGVGE PGKVIQKLCQ FSNVPRIPGS PIGGIITYRC bmy_00009T0/1-1302 -----GENVT CQDPIIGVGE PGKVIQKLCQ FSNVPRIPGS PIGGIITYRC BACU015835/1-1383 LNLVPGENVT CQDPIIGVGE PGKVIQKLCQ FSNVPRIPGS PIGGIITYRC 751 800 ENSP00000283296/1-1346 VGSQWEEKRN DCISAPINSL LQMAKALIKS PSQDEMLPTY LKDLSISIDK ENSBTAP00000035796/1-1343 VGSQWQIERN DCISAPINAL LQLAKALVKS PTQDEKLPSY LGNLSISTKQ ENSTTRP00000008016/1-1342 VGSQWKVKKN NCISAPINTL LQLAEALMKS PSQDEKLPSY LKNLSISTNQ bmy_00009T0/1-1302 VGSQWKVKKN NCISAPINTL LQLAEALMKS PSQDAKLPSY LKNLSISTNQ BACU015835/1-1383 VGSQWKVKKN NCISAPINTL LQLAEALMKS PSQDAKLPSY LKNLSISTNQ 801 850 ENSP00000283296/1-1346 AEHEISSSPG SLGAIINILD LLSTVPTQVN SEMMTHVLST VNVILGKPVL ENSBTAP00000035796/1-1343 VKLEVDSFSG TLGAIINILD LFSTVPTQVN SEMMTHVLST VNIILGKSAL ENSTTRP00000008016/1-1342 VKLEVKSFPG SLGAIINILD LLSTVPTQVN SEMMMHVLST VNVILGKPIL bmy_00009T0/1-1302 VKLEVNSFPG SLGAIINILD LLSTVPTKVN SEMMMHVLST VNVILGKPVL BACU015835/1-1383 VKLEVNSFPG SLGAIINILD LLSTVPTQVN SEMMMHVLST VNVILGKPIL 851 900 ENSP00000283296/1-1346 NTWKVLQQQW TNQSSQLLHS VERFSQALQS GDSPPLSFSQ TNVQMSSMVI ENSBTAP00000035796/1-1343 NTWKMSQQQK TNYSSQLLDS VERFSRVLRA EDS---TISQ PNVQMKSMVI ENSTTRP00000008016/1-1342 NTWMMSQQQK TNQSSQLLDS LERFSRALRS EDS---TISQ PNVQMKSMVI bmy_00009T0/1-1302 NTWMTSQQQK TNQSSQLLHS VERFSRALRS EDS---TISQ PNVQMKSMVI BACU015835/1-1383 NTWMTSQQQK TNQSSQLLHS VERFSQALRS EDS---TISQ PNVQMKSMVI 901 950 ENSP00000283296/1-1346 KSSHPETYQQ RFVFPYFDLW GNVVIDKSYL ENLQSDSSIV TMAFPTLQAI ENSBTAP00000035796/1-1343 KPGHPQSYRQ SFIFLDSDLW GNVTINGCQL EHLQPDSFVV TVAFPTLKTI ENSTTRP00000008016/1-1342 KSGHPKSYTQ SFVFLDSELW GNVTINECQL EHLQPDSFIV TVAFPTLKTI bmy_00009T0/1-1302 KSGHPKSYTQ SFVFLDSDLW GNVTINECQL EHLQPDSFIV TVAFPTLKTI BACU015835/1-1383 KSGHPKSYAQ SFVFLDSDLW GNVTINECQL EHLQPDSFIV TVAFPTLKTI 951 1000 ENSP00000283296/1-1346 LAQDIQENNF AESLVMTTTV SHNTTMP--F RISMTFKNNS PSGGETKCVF ENSBTAP00000035796/1-1343 LDRDVPGQNF ANSLVMTTTV SRSITTP--F RILMTFKNNH PLGGIPQCVF ENSTTRP00000008016/1-1342 LAQDVPGKTF ANSLVMTTTV SHNLTAPSPF RISMTFKNNN PSGGVPRCVF bmy_00009T0/1-1302 LAQDVPGKTF ANSLVMTTTV SQNITTP--F RISMTFKNNN PSGGVPRCVF BACU015835/1-1383 LAQDVPGKTF ANSLVMTTIV SQNITTP--F RISMTFKNNN PSGGVPRCVF 1001 1050 ENSP00000283296/1-1346 WNFRLANNTG GWDSSGCYVE EGDGDNVTCI CDHLTSFSIL MSPDSPDPSS ENSBTAP00000035796/1-1343 WNFDLANHTG GWDSSGCYVK EVTEDSVSCS CEHLTSFSIL MSPDSPDPDS ENSTTRP00000008016/1-1342 WNFNLANHTG GWDSSGCYVK EVTEDSVSCS CDHLTSFSIL MSPDSPDPDS bmy_00009T0/1-1302 WNFNLANHRG GWDSSGCYVK EVTEDSVSCS CDHLTSFSIL MSPDSPDPDS BACU015835/1-1383 WNFNLANHTG GWDSSGCYVK EVTEDSVSCS CDHLTSFSIL MSPDSPDPDS 1051 1100 ENSP00000283296/1-1346 LLGILLDIIS YVGVGFSILS LAACLVVEAV VWKSVTKNRT SYMRHTCIVN ENSBTAP00000035796/1-1343 LLKILLDIIS YIGLCFSILS LAACLVVEAV VWKSVTKNRT SSMRHICIVN ENSTTRP00000008016/1-1342 LLKILLDIIS YIGLCFSILS LAACLAVEAV VWKSVTKNRT SSMRHICIVN bmy_00009T0/1-1302 LLKILLDIIS YIGLCFSILS LAACLAVEAV VWKSVTKNRT SSMRHICIVN BACU015835/1-1383 LLKILLDIIS YIGLCFSILS LAACLAVEAV VWKSVTKNRT SSMRHICIVN 1101 1150 ENSP00000283296/1-1346 IAASLLVANT WFIVVAAIQD NRYILCKTAC VAATFFIHFF YLSVFFWMLT ENSBTAP00000035796/1-1343 ITASLLVADV WFIVAAAIHD HRFPLNETAC VAATFFVHFF YLSVFFWMLT ENSTTRP00000008016/1-1342 IAASLLVADV WFIVAAAVHN YRYPLNQTAC VAATFFVHFS YLSVFFWMLT bmy_00009T0/1-1302 IAASLLVADV WFIVAAAIHN YRYPLNRTAC VAATFFVHFS YLSVFFWMLT BACU015835/1-1383 IAASLLVADV WFIVAAAIHN YRYPLNQTAC VAATFFVHFS YLSVFFWMLT 1151 1200 ENSP00000283296/1-1346 LGLMLFYRLV FILHETSRST QKAIAFCLGY GCPLAISVIT LGATQPREVY ENSBTAP00000035796/1-1343 LGLMLFYRLV FILHDTSKSI QKTIAFSLGY GCPLVISIIT VGATQPREVY ENSTTRP00000008016/1-1342 LGLMLFYRLV FILHDTSKSI QKAIAFSLGY GCPLVISVIT VGATQPREVY bmy_00009T0/1-1302 LGLMLFYRLV FILHDTSKSI QKAIAFSLGY GCPLVISVIT VGATQPREVY BACU015835/1-1383 LGLMLFYRLV FILHDTSKSI QKAIAFSLGY GCPLVISVIT VGATQPREVY 1201 1250 ENSP00000283296/1-1346 TRKNVCWLNW EDTKALLAFA IPALIIVVVN ITITIVVITK ILRPSIGDKP ENSBTAP00000035796/1-1343 MRKNACWLNW EDTKALLAFV IPALIIVVVN MTITVVVITK ILRPSVGDKP ENSTTRP00000008016/1-1342 TRKNACWLNW EDTKALLAFV IPALIIVVVN VTITVVVITK ILRPSIGDKP bmy_00009T0/1-1302 TRKNACWLNW EDTKALLAFV IPALIIVVVN VTITVVVITK ILRPSIGDKP BACU015835/1-1383 TRKNACWLNW EDTKALLAFV IPALIIVVVN VTITVVVITK ILRPSIGDKP 1251 1300 ENSP00000283296/1-1346 CKQEKSSLFQ ISKSIGVLTP LLGLTWGFGL TTVFPGTNLV FHIIFAILNV ENSBTAP00000035796/1-1343 SKQEKSSLFQ VAKSIGVLTP LLGLTWGFGL ATVFQGSNAV FHIVFTLLNA ENSTTRP00000008016/1-1342 SRQEKSSLFQ ITKSLGVLTP LLGLTWGFGL ATVFQGSNAV FHIVFTLLNA bmy_00009T0/1-1302 SKQEKSSLFQ ITKSIGVLTP LLGLTWGFGL ATVFQGSNAV FHIVFTLLNA BACU015835/1-1383 SKQEKSSLFQ ITKSIGVLTP LLGLTWGFGL ATVFQGSNAV FHIVFTLLNA 1301 1350 ENSP00000283296/1-1346 FQGLFILLFG CLWDLKVQEA LLNKFSLSRW SSQHSKSTSL GSSTPVFSMS ENSBTAP00000035796/1-1343 FQGLFILLFG CLWDQKVQEA LLNKYSRSKW SSQHSKSTSI GSSTPVFSMS ENSTTRP00000008016/1-1342 FQGLFILLFG CLWDQKVQEA LLNKFSLSRW SSQHSKSTSL GSSTQVFSMS bmy_00009T0/1-1302 FQGLFILLFG CLWDQKVQEA LLNKFSLSRW SSQHSKSTSL GSSTPVFSMS BACU015835/1-1383 FQGLFILLFG CLWDQKVQEA LLNKFSLSRW SSQHSKSTSL GSSTPVFSMS 1351 1400 ENSP00000283296/1-1346 SPISRRFNNL FGKTGTYNVS TPEATSSSLE NSSSASSLLN ENSBTAP00000035796/1-1343 SPISRRFNNL FGKTGTYNVS TPETTSSSLE NTSSAYSLLN ENSTTRP00000008016/1-1342 SPISRRF-NL FGKTGTYNVS TPEITSSSLE NTSSAYSLLN bmy_00009T0/1-1302 SPISRRFNNL FGKTGTYNVS TPEITSSSLE NTSSAYSLLN BACU015835/1-1383 SPISRRFNNL FGKTGTYNVS TPEITSSSLE NTSSAYSLLN