KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:55 2014 Check: 00 .. Name: ENSBTAP00000035733/1-579 Len: 628 Check: 3532 Weight: 1.00 Name: ENSP00000323670/1-584 Len: 628 Check: 4556 Weight: 1.00 Name: bmy_15841T0/1-624 Len: 628 Check: 6137 Weight: 1.00 Name: ENSTTRP00000006412/1-587 Len: 628 Check: 7439 Weight: 1.00 // 1 50 ENSBTAP00000035733/1-579 ---------- ---------- ---------- -------MAG GVDGPIGIPF ENSP00000323670/1-584 ---------- ---------- ---------- -------MAG GVDGPIGIPF bmy_15841T0/1-624 MWGHYFLRAS QPGQLARPSL SLTTTPSSPV LQVSARKMAG GVDGPIGIPF ENSTTRP00000006412/1-587 ---------- ---------- ---------- -------MAG GVDGPIGIPF 51 100 ENSBTAP00000035733/1-579 PDHSSEILSG LNEQRTQGLL CDVVILVEGR EFPTHRSVLA ACSQYFKKLF ENSP00000323670/1-584 PDHSSDILSG LNEQRTQGLL CDVVILVEGR EFPTHRSVLA ACSQYFKKLF bmy_15841T0/1-624 PDHSSDILSG LNEQRTQGLL CDVVILVEGR EFPTHRSVLA ACSQYFKKLF ENSTTRP00000006412/1-587 PDHSSDILSG LNEQRTQGLL CDVVILVEGR EFPTHRSVLA ACSQYFKKLF 101 150 ENSBTAP00000035733/1-579 TSGAVVDQQN VYEIDFVSAE ALTALMDFAY TATLTVSTAN VGDILSAARL ENSP00000323670/1-584 TSGAVVDQQN VYEIDFVSAE ALTALMDFAY TATLTVSTAN VGDILSAARL bmy_15841T0/1-624 TSGAVVDQQN VYEIDFVSAE ALTALMDFAY TATLTVSTAN VGDILSAARL ENSTTRP00000006412/1-587 TSGAVVDQQN VYEIDFVSAE ALTALMDFAY TATLTVSTAN VGDILSAARL 151 200 ENSBTAP00000035733/1-579 LEIPAVSHVC ADLLDRQILA ADAGADAGQL DLVDQIDQRN LLRAKEYLEF ENSP00000323670/1-584 LEIPAVSHVC ADLLDRQILA ADAGADAGQL DLVDQIDQRN LLRAKEYLEF bmy_15841T0/1-624 LEIPAVSHVC ADLLDRQILA ADAGADAGQL DLVDQIDQRN LLRAKEYLEF ENSTTRP00000006412/1-587 LEIPAVSHVC ADLLDRQILA ADAGADAGQL DLVDQIDQRN LLRAKEYLEF 201 250 ENSBTAP00000035733/1-579 FQTNPMNSLP ---ATAAASF PWSTFGASDD DLDATKEAVA AAVAAVAAGD ENSP00000323670/1-584 FQSNPMNSLP PAAAAAAASF PWSAFGASDD DLDATKEAVA AAVAAVAAGD bmy_15841T0/1-624 FQSNPMNSLP --AAAAAASF PWSAFGASDD DLDATKEAVA AAVAAVAAGD ENSTTRP00000006412/1-587 FQSNPMNSLP --AAAAAASF PWSAFGASDD DLDATKEAVA AAVAAVAAGD 251 300 ENSBTAP00000035733/1-579 CNGLDFYGPG PPAERPPAGD GDEGDSNPGL WPERDEDAPA GGLFPTPVVP ENSP00000323670/1-584 CNGLDFYGPG PPAERPPTGD GDEGDSNPGL WPERDEDAPT GGLFPPPVAP bmy_15841T0/1-624 CNGLDFYGPG PPAERPPAGD GDEGDSNPGL WPERDDDAPT GGLFPTPVAQ ENSTTRP00000006412/1-587 CNGLDFYGPG PPAERPPAGD GDEGDSNPGL WPERDDDAPA GGLFPPPVAQ 301 350 ENSBTAP00000035733/1-579 PSTATQNGHY GRGGEEEAAS LSEAAPEPGD SPGFLSGAAE GEDADGADAD ENSP00000323670/1-584 PA-ATQNGHY GRGGEEEAAS LSEAAPEPGD SPGFLSGAAE GEDGDGPDVD bmy_15841T0/1-624 PSTATQNGHY GRGGEEEAAS LSEAAPEPGD SPGFLSGTAE GEDGDGADAD ENSTTRP00000006412/1-587 PSTATQNGHY GRGGEEEAAS LSEAAPEPGD SPGFLSGTAE GEDGDGADTD 351 400 ENSBTAP00000035733/1-579 GLAASTLLQQ MMSSVGRAGA TTAGDSDEES RADDKGVVDY YLKYFSGAHD ENSP00000323670/1-584 GLAASTLLQQ MMSSVGRAGA A-AGDSDEES RADDKGVMDY YLKYFSGAHD bmy_15841T0/1-624 GLAASTLLQQ MMSSVGRAGA ATAGDSDEES RADDKGVVDY YLKYFSGAHD ENSTTRP00000006412/1-587 GLAASTLLQQ MMSSVGRAGA ATAGDSDEES RADDKGVVDY YLKYFSGAHD 401 450 ENSBTAP00000035733/1-579 GDVYPAWSQK VEKKIRAKAF QKCPICEKVI QGAGKLPRHI RTHTGEKPYE ENSP00000323670/1-584 GDVYPAWSQK VEKKIRAKAF QKCPICEKVI QGAGKLPRHI RTHTGEKPYE bmy_15841T0/1-624 GDVYPAWSQK VEKKIRAKAF QKCPICEKVI QGAGKLPRHI RTHTGEKPYE ENSTTRP00000006412/1-587 GDVYPAWSQK VEKKIRAKAF QKCPICEKVI QGAGKLPRHI RTHTGEKPYE 451 500 ENSBTAP00000035733/1-579 CNICKVRFTR QDKLKVHMRK HTGEKPYLCQ QCGAAFAHNY DLKNHMRVHT ENSP00000323670/1-584 CNICKVRFTR QDKLKVHMRK HTGEKPYLCQ QCGAAFAHNY DLKNHMRVHT bmy_15841T0/1-624 CNICKVRFTR QDKLKVHMRK HTGEKPYLCQ QCGAAFAHNY DLKNHMRVHT ENSTTRP00000006412/1-587 CNICKVRFTR QDKLKVHMRK HTGEKPYLCQ QCGAAFAHNY DLKNHMRVHT 501 550 ENSBTAP00000035733/1-579 GLRPYQCDSC CKTFVRSDHL HRHLKKDGCN GVPSRRGRKP RVXA------ ENSP00000323670/1-584 GLRPYQCDSC CKTFVRSDHL HRHLKKDGCN GVPSRRGRKP RVRGGA---- bmy_15841T0/1-624 GLRPYQCDSC CKTFVRSDHL HRHLKKDGCN GVPSRRGRKP RVRGGGLGGP ENSTTRP00000006412/1-587 GLRPYQCDSC CKTFVRSDHL HRHLKKDGCH GVPSRRGRKP RVRGGGLGGP 551 600 ENSBTAP00000035733/1-579 -PPP-PGAPA PPGSPEDDTA TAARRNGQEK HFKDEDEEED EASPDGLGRL ENSP00000323670/1-584 -PDPSPGATA TPGAPAQPSS PDARRNGQEK HFKDEDEDED VASPDGLGRL bmy_15841T0/1-624 DPAPAPGAPA PPGAPAPPGS PDARRNGQEK HFKDEDEDED EASPDGLGRL ENSTTRP00000006412/1-587 DPAPAPGAPV PPGAPAPPGS PDARRNGQEK HFKDEDEDED EASPDGLGRL 601 650 ENSBTAP00000035733/1-579 NVASAAGGGD -GGSRATTAD GSFAAGLA ENSP00000323670/1-584 NVAGAGGGGD SGGGPGAATD GNFTAGLA bmy_15841T0/1-624 NVAGAAGGGD --GGAGATAD GSFAAGLA ENSTTRP00000006412/1-587 NVAGAAGGGD --GGAGATAD GSFAAGLA