KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:05 2014 Check: 00 .. Name: ENSP00000230671/1-636 Len: 680 Check: 3214 Weight: 1.00 Name: ENSBTAP00000035062/1-636 Len: 680 Check: 2874 Weight: 1.00 Name: bmy_14430T0/1-604 Len: 680 Check: 4476 Weight: 1.00 Name: BACU013115/1-680 Len: 680 Check: 8109 Weight: 1.00 // 1 50 ENSP00000230671/1-636 MKKLQGAHLR KPVTPDLLMT PSDQGDVDLD VDFAAHRGNW TGKLDFLLSC ENSBTAP00000035062/1-636 MKKLQGAHLR KPVTPDLLMT PSDQGDVDLD VDFAADRGNW TGKLDFLLSC bmy_14430T0/1-604 ---------- --------MT PSDQGDVDLD VDFAADRGNW TGKLDFLLSC BACU013115/1-680 MKKLQGAHLS KPIIPDLLMT PSDQGDVDLD VDFAADRGNW TGKLDFLLSC 51 100 ENSP00000230671/1-636 IGYCVGLGNV WRFPYRAYTN GGGAFLV--- ---------- ---------- ENSBTAP00000035062/1-636 IGYCVGLGNV WRFPYRAYTN GGGAFLV--- ---------- ---------- bmy_14430T0/1-604 IGYCVGLGNV WRFPYRAYTN GGGAFLV--- ---------- ---------- BACU013115/1-680 IGYCVGLGNV WRFPYRAYTN GGGAFLVPYF LMLAICGIPL FFLELSLGQF 101 150 ENSP00000230671/1-636 ---------- ---------- -PYFLMLAIC GIPLFFLELS LGQFSSLGPL ENSBTAP00000035062/1-636 ---------- ---------- -PYFLMLAIC GIPLFFLELS LGQFSSLGPL bmy_14430T0/1-604 ---------- ---------- -PYFLMLAIC GIPLFFLELS LGQFSSLGPL BACU013115/1-680 SSLGPLAVWK ISPLFKGAFL VPYFLMLAIC GIPLFFLELS LGQFSSLGPL 151 200 ENSP00000230671/1-636 AVWKISPLFK GAGAAMLLIV GLVAIYYNMI IAYVLFYLFA SLTSDLPWEH ENSBTAP00000035062/1-636 AVWKISPLFK GAGAAMLLIV GLVAIYYNMI IAYVLFYLFA SLTSNLPWEH bmy_14430T0/1-604 AVWKISPLFK GAGAAMLLIV GLVAIYYNMI IAYVLFYLFA SLTSNLPWEH BACU013115/1-680 AVWKISPLFK GAGAAMLLIV GLVAIYYNMI IAYVLFYLFA SLTSNLPWEH 201 250 ENSP00000230671/1-636 CGNWWNTELC LEHRVSKDGN GALPLNLTCT VSPSEEYWSR YVLHIQGSQG ENSBTAP00000035062/1-636 CGNWWNTDLC LEHRGSKDGN GALPLNLTST VSPSEEYWSR YVLHIQGSQG bmy_14430T0/1-604 CGNWWNTDLC LEHRGSKDSN GALPLNLTST VSPSEEYWSR YVLHIQGSQG BACU013115/1-680 CGNWWNTDLC LEHRGSKDGN GALPLNLTST VSPSEEYWSR YVLHIQGSRG 251 300 ENSP00000230671/1-636 IGSPGEIRWN LCLCLLLAWV IVFLCILKGV KSSGKVVYFT ATFPYLILLM ENSBTAP00000035062/1-636 IGSPGHIRWN LCLCLLLAWV IVFLCILKGV KSSGKVVYFT ATFPYLILLM bmy_14430T0/1-604 IGSPGQIRWN LCLCLLLAWV I--------- -----VVYFT ATFPYLILLM BACU013115/1-680 IGSPGQIRWN LCLCLLLAWV IVFLCILKGV KSSGKVVYFT ATFPYLILLM 301 350 ENSP00000230671/1-636 LLVRGVTLPG AWKGIQFYLT PQFHHLLSSK VWIEAALQIF YSLGVGFGGL ENSBTAP00000035062/1-636 LLVRGVTLPG AWKGIQFYLT PQFHHLLSSK VWIEAALQIF YSLGVGFGGL bmy_14430T0/1-604 LLVRGVTLPG AWKGIQFYLT PQFHHLLSSK VWIEAALQIF YSLGVGFGGL BACU013115/1-680 LLVRGVTLPG AWKGIQFYLT PQFHHLLSSK VWIEAALQIF YSLGVGFGGL 351 400 ENSP00000230671/1-636 LTFASYNTFH QNIYRDTFIV TLGNAITSIL AGFAIFSVLG YMSQELGVPV ENSBTAP00000035062/1-636 LTFASYNTFH QNIYRDTFIV TLGNAITSIL AGFAIFSVLG YMSQELGVPV bmy_14430T0/1-604 LTFASYNTFH QNIYRDTFIV TLGNAITSIL AGFAIFSVLG YMSQELGVPV BACU013115/1-680 LTFASYNTFH QNIYRDTFIV TLGNAITSIL AGFAIFSVLG YMSQELGVPV 401 450 ENSP00000230671/1-636 DQVAKAGPGL AFVVYPQAMT MLPLSPFWSF LFFFMLLTLG LDSQFAFLET ENSBTAP00000035062/1-636 DQVAKAGPGL AFVVYPQAMT MLPLSPFWSF LFFFMLLTLG LDSQFAFLET bmy_14430T0/1-604 DQVAKAGPGL AFVVYPQAMT MLPLSPFWSF LFFFMLLTLG LDSQFAFLET BACU013115/1-680 DQVAKAGPGL AFVVYPQAMT MLPLSPFWSF LFFFMLLTLG LDSQFAFLET 451 500 ENSP00000230671/1-636 IVTAVTDEFP YYLRPKKAVF SGLICVAMYL MGLILTTDGG MYWLVLLDDY ENSBTAP00000035062/1-636 IVTAVTDEFP YYLRPKKAVF SGLICVAMYL MGLVLTTDGG MYWLVLLDDY bmy_14430T0/1-604 IVTAVTDEFP YYLRPKKAVF SGLICVAMYL MGLVLTTDGG MYWLVLLDDY BACU013115/1-680 IVTAVTDEFP YYLRPKKAVF SGLICVAMYL MGLVLTTDGG MYWLVLLDDY 501 550 ENSP00000230671/1-636 SASFGLMVVV ITTCLAVTRV YGIQRFCRDI HMMLGFKPGL YFRACWLFLS ENSBTAP00000035062/1-636 SASFGLMVVV ITTCLAVTRV YGIQRFCRDI HMMLGFKPGF YFRACWLFLS bmy_14430T0/1-604 SASFGLMVVV ITTCLAVTRV YGIQRFCRDI HMMLGFKPGL YFRACWLFLS BACU013115/1-680 SASFGLMVVV ITTCLAVTRV YGIQRFCRDI HMMLGFKPGL YFRACWLFLS 551 600 ENSP00000230671/1-636 PATLLALMVY SIVKYQPSEY GSYRFPPWAE LLGILMGLLS CLMIPAGMLV ENSBTAP00000035062/1-636 PATLLALLVY SIVKYQPSEY GSYRFPAWAE LLGILMGLLS CLMIPAGMLV bmy_14430T0/1-604 PATLLALLVY SIVKYQPSEY GSYRFPAWAE LLGILMGLLS CLMIPAGMLV BACU013115/1-680 PATLLALLVY SIVKYQPSEY GSYRFPAWAE LLGILMGLLS CLMIPAGMLV 601 650 ENSP00000230671/1-636 AVLREEGSLW ERLQQASRPA MDWGPSLEEN RTGMYVATLA GSQSPKPLMV ENSBTAP00000035062/1-636 AVLREEGSLW ERLQQASRPA MDWGPSLEEN RTGMYVATLA GSQSPKPLMV bmy_14430T0/1-604 AVLREEGSLW ERLQQASRPA LDWGPSLEEN RTGMYVATLA GSQSPKPLMV BACU013115/1-680 AVLREEGSLW ERLQQASRPA LDWGPSLEEN RTGMYVATLA GSQSPKPLMV 651 700 ENSP00000230671/1-636 HMRKYGGITS FENTAIEVDR EIAEEEESMM ENSBTAP00000035062/1-636 HMRKYGGITS FENTAIEVDR EIAEEEESMM bmy_14430T0/1-604 HMRKYGGITS FENTAIEVDR EIAEEEESMM BACU013115/1-680 HMRKYGGITS FENTAIEVDR EIAEEEESMM