KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:45:00 2014 Check: 00 .. Name: ENSP00000347721/1-512 Len: 546 Check: 9427 Weight: 1.00 Name: bmy_00217T0/1-408 Len: 546 Check: 6909 Weight: 1.00 Name: ENSTTRP00000000562/1-511 Len: 546 Check: 8586 Weight: 1.00 Name: ENSBTAP00000034997/1-535 Len: 546 Check: 8322 Weight: 1.00 // 1 50 ENSP00000347721/1-512 ---------- --------MA GGMSAECPEP G--------P GGLQGQSPGP bmy_00217T0/1-408 ---------- ---------- --MSAECGEP G--------P EGLQGWSPGP ENSTTRP00000000562/1-511 ---------- --------EA GGMSAECGEP G--------P EGLQGWSPGP ENSBTAP00000034997/1-535 MIPTHLRIRL YAMNCRLLEA PGAGFHAGEA GGMSVEFRQP EGLHGQSPGP 51 100 ENSP00000347721/1-512 G--------R QCPPPITPTS WSLPPWRAYV AAAVLCYINL LNYMNWFIIA bmy_00217T0/1-408 GGHSEAMGSG PCPSPSMPTP WSLPRWRAYV AAAVLCYINL LNYMNWFIIA ENSTTRP00000000562/1-511 G--------G QCPSPSTPTP WSLPRWRAYV AAAVLCYINL LNYMNWFIIA ENSBTAP00000034997/1-535 GGPSRA---T DTDPPSLPAP WSLPRWRAYV AAAVLCYINL LNYMNWFIIA 101 150 ENSP00000347721/1-512 GVLLDIQEVF QISDNHAGLL QTVFVSCLLL SAPVFGYLGD RHSRKATMSF bmy_00217T0/1-408 GVLLDVQKFF HISDSDAGLL QTVFVGCLLL SAPVFGYLGD RHSRKATLSL ENSTTRP00000000562/1-511 GVLLDVQKFY QISDSNAGLL QTVFIGCLLL SAPVFGYLGD RHSRKVTLSL ENSBTAP00000034997/1-535 GVLLDVQKFF HISDSNAGLL QTVFISFLLL SAPVFGYLGD RHSRKATLSF 151 200 ENSP00000347721/1-512 GILLWSGAGL SSSFISPRYS WLFFLSRGIV GTGSASYSTI APTVLGDLFV bmy_00217T0/1-408 GILLWSGAGL SSSFISPRYS WLFFLSRGVV GTGTASYSTI APTVLGDLFV ENSTTRP00000000562/1-511 GILLWSGAGL CSSFIPPRYS WLFFLSRGVV GTGTASYSTT APTVLGDLFV ENSBTAP00000034997/1-535 GILLWSGAGL SSSFISPRYS WLFFLSRGLV GTGTASYSTI APTVLGDLFV 201 250 ENSP00000347721/1-512 RDQRTRVLAV FYIFIPVGSG LGYVLGSAVT MLTGNWRWAL RVMPCLEAVA bmy_00217T0/1-408 RDQRTRVLAI FYIFIP---- ---------- ---------- -IMPCLEAVA ENSTTRP00000000562/1-511 RDQRTRVLAI FYIFIPVGSG LGYVLGSAVT ELTGNWRWAL RIMPCLEAVA ENSBTAP00000034997/1-535 RDQRTRVLAI FYIFIPVGSG LGYVLGSAVA ELTGNWRWAL RIMPCLEAVA 251 300 ENSP00000347721/1-512 LILLILLVPD PPRGAAETQG EGAVGGFRSS WCEDVRYLGK NWSFVWSTLG bmy_00217T0/1-408 LTLLIVLVPD PPWGAAEKQG VVTVGGPRST WCEDVRYLGR NWSFVWSTLG ENSTTRP00000000562/1-511 LILLIVLVPD PPRGAAEKQG VVTVGGPRST WCEDVRYLGR NWSFVGSTLG ENSBTAP00000034997/1-535 LILLIMLVPD PPRGAAEKQG VATTGDPRSS WCEDVRYLWR NWSFVWSTLG 301 350 ENSP00000347721/1-512 VTAMAFVTGA LGFWAPKFLL EARVVHGLQP PCFQEPCSNP DSLIFGALTI bmy_00217T0/1-408 VTAMAFVTGA LGFWAPKFLF EARVVHGLQL PCFREPCNSQ DSLIFGVLTV ENSTTRP00000000562/1-511 VTAMAFVTGA LGFWAPKFLF EARVVHGLQL PCFREPCNSQ DSLIFGVLTV ENSBTAP00000034997/1-535 VTAMAFVTGA LGFWAPKFLF EARVVHGLLL PCFREPCNSQ DSLIFGALTV 351 400 ENSP00000347721/1-512 MTGVIGVILG AEAARRYKKV IPGAEPLICA SSLLATAPCL YLALVLAPTT bmy_00217T0/1-408 VTGLVGVILG AEASRRYKKV NPRAEPLICA ASLLAAAPCL YLALILAPTT ENSTTRP00000000562/1-511 VTGLVGVILG AEASRRYKKV NPRAEPLICA ASLFAAAPCL YLALILAPTT ENSBTAP00000034997/1-535 VTGIIGVILG AETSRRYKKV NPQAEPLICA ASLLAAAPCL YLALILAPTT 401 450 ENSP00000347721/1-512 LLASYVFLGL GELLLSCNWA VVADILLSVV VPRCRGTAEA LQITVGHILG bmy_00217T0/1-408 LLASY----- ---------- ---------A GPGTRGTA-- ---------G ENSTTRP00000000562/1-511 LLASYVFLAL GELLLSCNWA VVADILLSVV VPRCRGTAEA LQITVGHILG ENSBTAP00000034997/1-535 LLASYVFLAL GELLLSCNWA VVADILLSVV VPRCRGTAEA LQITVGHILG 451 500 ENSP00000347721/1-512 DAGSPYLTGL ISSVLRARRP DSYLQRFRSL QQSFLCCAFV IALGGGCFLL bmy_00217T0/1-408 QEGWQGWDVS IVQCWEAAPP ---------- ------C--- ----GSCLGL ENSTTRP00000000562/1-511 DAGSPYLTGL ISSALRAARP DSYLQRFFSL QHSFLCCTFI IILGGGCFLL ENSBTAP00000034997/1-535 DAGSPYLMGL ISSALQAGRP DTYLQRFLSL QQSFLCCAFV IALGGGCFLL 501 550 ENSP00000347721/1-512 TALYLERDET RAWQPVTGTP DSNDVDSNDL ERQGLLSGAG ASTEEP bmy_00217T0/1-408 AGPPATRTPA FQKWCGSFW- ---------- ---------- ----TP ENSTTRP00000000562/1-511 TALHLERDQV QVQL-GTGIP DSKDVHSEAM ESQRLLPSTG ASPEDP ENSBTAP00000034997/1-535 TALYLERDQA QAQKSGTGIL ES-------- ENQRLIPGRG APPKDP