KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:11 2014 Check: 00 .. Name: ENSP00000356630/1-543 Len: 548 Check: 6615 Weight: 1.00 Name: ENSTTRP00000012928/1-287 Len: 548 Check: 9932 Weight: 1.00 Name: ENSBTAP00000034160/1-456 Len: 548 Check: 3541 Weight: 1.00 Name: bmy_01786T0/1-415 Len: 548 Check: 9320 Weight: 1.00 Name: BACU020107/1-288 Len: 548 Check: 279 Weight: 1.00 // 1 50 ENSP00000356630/1-543 MPNPKNSKGG RKNKRANSSG DEQENGAGAL AAAGAAGAAA GGALAAAAGC ENSTTRP00000012928/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034160/1-456 ---------- ---------- ---------- ---------- ---------- bmy_01786T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU020107/1-288 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356630/1-543 GAAAAGAPGA GGAAGAGGAG TGAANAAAAA GAAAAGDAKN EAPCATPLIC ENSTTRP00000012928/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034160/1-456 ---------- ---------- ---------- ---------- EAPCATPLIC bmy_01786T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU020107/1-288 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000356630/1-543 SFGRPVDLEK DDYQKVVCNN EHCPCSTWMH LQCFYEWESS ILVQFNCIGR ENSTTRP00000012928/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034160/1-456 SFGRPVDLEK DDYQKVVCNN EHCPHSTWMH LQCFYEWESS ILVQFNCIGR bmy_01786T0/1-415 ---------- ---------- --------MH LQCFYAWESS ILVQFNCIGR BACU020107/1-288 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000356630/1-543 ARSWNEKQCR QNMWTKKGYD LAFRFCSCRC GQGHLKKDTD WYQVKRMQDE ENSTTRP00000012928/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034160/1-456 ARSWNEKQCR QNMWTKKGYD LAFRFCSCRC GQGHLKKDTD WYQVKRMQDE bmy_01786T0/1-415 ARSWNEKQCR QNMWTKKGYD LAFRFCSCRC GQGHLKKDTD WYQVKRMQDE BACU020107/1-288 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000356630/1-543 KKKKSGSEKN TGRPPGEAAE EAKKCRPPNK PQKGPSHDLP RRHSMDRQNS ENSTTRP00000012928/1-287 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000034160/1-456 KKKKSGSEKN TGRPPGEAVE EAKKCRPPSK PQKGLSHDLP RRHSMDRQNS bmy_01786T0/1-415 KKKKSGSERN TGRPPGEAVE EAKKCRPPTK PQKGLSHDLP RRHSMDRQNS BACU020107/1-288 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000356630/1-543 QEKAV---GA AAYGARSPGG SPGQSPPTGY SILSPAHFSG PRSSRYLGEF ENSTTRP00000012928/1-287 ---------- AAYGARSPCG SPGQSPPTGY SILSPAHFSG PRSSRYLGEF ENSBTAP00000034160/1-456 QEKGGAGAGA AVYGARSPCG SPGQSPPTGY SILSPAHFSG PRSSRYLGEF bmy_01786T0/1-415 QEKGG---GA AAYGARSPCG SPGQSPPTGY SILSPAHFSG PRSSRYLGEF BACU020107/1-288 ---------- AAYGARSPWG SPGQSPPTGY SILSPAHFSG PRSSRYLGEF 301 350 ENSP00000356630/1-543 LKNAIHLEPH KKAMAGGHVF RNAHFDYSPA GLAVHRGGHF DTPVQFLRRL ENSTTRP00000012928/1-287 LKNAIHLEPH KKALAGGHVF RNAHFDYSPA GLSVHRGGHF DAPVQFLRRL ENSBTAP00000034160/1-456 LKNAIHLEPH KKALAGGHVF RNAHFDYSPA GLSVHRGGHF DAPVQFLRRL bmy_01786T0/1-415 LKNAIHLEPH KKALAGGHVF RNAHFDYSPA GLSVHRGGHF DAPVQFLRRL BACU020107/1-288 LKNAIHLEPH KKALAGGHVF RNAHFDYSPA GLSVHRGGHF DAPVQFLRRL 351 400 ENSP00000356630/1-543 DLSELLTHIP RHKLNTFHVR MEDDAQVGQG EDLRKFILAA LSASHRNVVN ENSTTRP00000012928/1-287 DLSELLTHIP RHKLNTFHVR VEDDAQMGQG EDLRKFILAA LSASHRNVVN ENSBTAP00000034160/1-456 DLSELLTHIP RHKLNTFHVR MEDDAQMGQG EDLRKFILAA LSASHRNVVN bmy_01786T0/1-415 DLSELLTHIP RHKLNTFHVR VEDDAQMGQG EDLRKFILAA LSASHRNVVN BACU020107/1-288 DLSELLTHIP RHKLNTFHVR VEDDAQMGQG EDLRKFILAA LSASHRNVVN 401 450 ENSP00000356630/1-543 CALCHRALPV FEQFPLVDGT LFLSPSRHDE IEYDVPCHLQ --GRLMHLYA ENSTTRP00000012928/1-287 CALCHRALPV FEQFPLVDGT LFLSPSRHDE IEYDVPCHLQ -XXXXXNLYA ENSBTAP00000034160/1-456 CALCHRVLPV FEQFPLVDGT LFLSPSRHDE IEYDVPCHLQ --GRLMHLYA bmy_01786T0/1-415 CALCHRALPV FEQFPLVDGT LFLSPSRHDE IEYDVPCHLQ --GRLMHLYA BACU020107/1-288 CALCHRALPV FEQFPLVDGT LFLSPSRHDE IEYDVPCHLQ GTGRLMHLYA 451 500 ENSP00000356630/1-543 VCVDCLEGVH KIICIKCKSR WDGSWHQLGT MYTYDILAAS PCCQARLNCK ENSTTRP00000012928/1-287 VCVDCLEGVH KIICIKCKSR WDGSWHQLGT MYTYDILAAS PCCQARLNCK ENSBTAP00000034160/1-456 VCVDCLEGVH KIICIKCKSR WDGSWHQLGT MYTYDILAAS PCCQARLNCK bmy_01786T0/1-415 VCVDCLEGVH KIICIKCKSR WDGSWHQLGT MYTYDILAAS PCCQARLNCK BACU020107/1-288 VCVDCLEGVH KIICIKCKSR WDGSWHQLGT MYTYDILAAS PCCQARLNCK 501 550 ENSP00000356630/1-543 HCGKPVIDVR IGMQYFSEYS NVQQCPHCGN LDYHFVKPFS SFKVLEAY ENSTTRP00000012928/1-287 HCGKPVIDVR IGMQYFSEYS NVQQCPHCGN LDYHFVKPFS SFKVLEAY ENSBTAP00000034160/1-456 HCGKPVIDVR IGMQYFSEYS NVQQCPHCGN LDYHFVKPFS SFKVLEAY bmy_01786T0/1-415 HCGKPVIDVR IGMQYFSEYS NVQQCPHCGN LDYHFVKPFS SFKVLEAY BACU020107/1-288 HCGKPVIDVR IGMQYFSEYS NVQQCPHCGN LDYHFVKPFS SFKVLEAY