KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:10 2014 Check: 00 .. Name: ENSTTRP00000001549/1-514 Len: 715 Check: 6861 Weight: 1.00 Name: BACU001671/1-615 Len: 715 Check: 3632 Weight: 1.00 Name: bmy_13231T0/1-571 Len: 715 Check: 3552 Weight: 1.00 Name: ENSP00000408108/1-661 Len: 715 Check: 6498 Weight: 1.00 Name: ENSBTAP00000034100/1-514 Len: 715 Check: 9396 Weight: 1.00 // 1 50 ENSTTRP00000001549/1-514 ---------- ---------- ---------- ---------- ---------- BACU001671/1-615 MQANGAGGGG GGGGGGGGGG GGGGGGGQGQ TQELACLSAQ NGESSPSSSS bmy_13231T0/1-571 MQANGAGG-G GGGGGGGGGG GGGGGGGQGQ TQELACLSAQ NGESSPSSSS ENSP00000408108/1-661 MQANGAG--G GGGGGGGGGG GGGGGGGQGQ TPELACLSAQ NGESSPSSSS ENSBTAP00000034100/1-514 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001549/1-514 ---------- ---------- ---------- ---------- ---------- BACU001671/1-615 SAGDLAHANG LLPSAPSAAS NNSNSLNVNN GVSGGAAAAA SATVAAASAT bmy_13231T0/1-571 SAGDLAHANG LLPSAPSAAS NNSNSLNVNN GVSGGAAAAA SATVAAASAT ENSP00000408108/1-661 SAGDLAHANG LLPSAPSAAS NNSNSLNVNN GVPGGAAAAS SATVAAASAT ENSBTAP00000034100/1-514 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001549/1-514 ---------- ---------- ---------- ---------- ---------M BACU001671/1-615 TAASSSLATP ELGSSLKKKK RLSQSDEDVI RLIGQHLNGL GLNQTVDLLM bmy_13231T0/1-571 TAASSSLATP ELGSSLKKKK RLSQSDEDVI RLIGQHLNGL GLNQTVDLLM ENSP00000408108/1-661 TAASSSLATP ELGSSLKKKK RLSQSDEDVI RLIGQHLNGL GLNQTVDLLM ENSBTAP00000034100/1-514 ---------- ---------- ---------- ---------- ---------M 151 200 ENSTTRP00000001549/1-514 QESGCRLEHP SATKFRNHVM EGDWDKAEND LNELKPLVHS PHAIVVRGAL BACU001671/1-615 QESGCRLEHP SATKFRNHVM EGDWDKAEND LNELKPLVHS PHA------- bmy_13231T0/1-571 QESGCRLEHP SATKFRNHVM EGDWDKAEND LNELKPLVHS PHA------- ENSP00000408108/1-661 QESGCRLEHP SATKFRNHVM EGDWDKAEND LNELKPLVHS PHAIVVRGAL ENSBTAP00000034100/1-514 QESGCRLEHP SATKFRNHVM EGDWDKAEND LNELKPLVHS PHAIVVRGAL 201 250 ENSTTRP00000001549/1-514 EISQTLLGII VRMKFLLLQQ KYLEYLEDGK VLEALQVLRC ELTPLKYNTE BACU001671/1-615 ---------I VRMKFLLLQQ KYLEYLEDGK VLEALQVLRC ELTPLKYNTE bmy_13231T0/1-571 ---------I VRMKFLLLQQ KYLEYLEDGK VLEALQVLRC ELTPLKYNTE ENSP00000408108/1-661 EISQTLLGII VRMKFLLLQQ KYLEYLEDGK VLEALQVLRC ELTPLKYNTE ENSBTAP00000034100/1-514 EISQTLLGII VRMKFLLLQQ KYLEYLEDGK VLEALQVLRC ELTPLKYNTE 251 300 ENSTTRP00000001549/1-514 RIHVLSGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX YLPPSVMLPP BACU001671/1-615 RIHVLSGYLM CSHAEDLRAK AEWEGKGTAS RSKLLDKLQT YLPPSVMLPP bmy_13231T0/1-571 RIHVLSGYLM CSHAEDLRAK AEWEGKGTAS RSKLLDKLQT YLPPSVMLPP ENSP00000408108/1-661 RIHVLSGYLM CSHAEDLRAK AEWEGKGTAS RSKLLDKLQT YLPPSVMLPP ENSBTAP00000034100/1-514 RIHVLSGYLM CSHAEDLRAK AEWEGKGTAS RSKLLDKLQT YLPPSVMLPP 301 350 ENSTTRP00000001549/1-514 RRLQTLLRQA VELQRDRCLY HNTKLDNNLD SVSLLIDHVC SRRQFPCYTQ BACU001671/1-615 RRLQTLLRQA VELQRDRCLY HNTKLDNNLD SVSLLIDHVC SRRQFPCYTQ bmy_13231T0/1-571 RRLQTLLRQA VELQRDRCLY HNTKLDNNLD SVSLLIDHVC SRRQFPCYTQ ENSP00000408108/1-661 RRLQTLLRQA VELQRDRCLY HNTKLDNNLD SVSLLIDHVC SRRQFPCYTQ ENSBTAP00000034100/1-514 RRLQTLLRQA VELQRDRCLY HNTKLDSNLD SVSLLIDHVC SRRQFPCYTQ 351 400 ENSTTRP00000001549/1-514 QILTEHCNEV WFCKFSNDGT KLATGSKDTT VIIWQVDPDT HLLKLLKTLE BACU001671/1-615 QILTEHCNEV WFCKFSNDGT KLATGSKDTT VIIWQVDPDT HLLKLLKTLE bmy_13231T0/1-571 QILTEHCNEV WFCKFSNDGT KLATGSKDTT VIIWQVDPDT HLLKLLKTLE ENSP00000408108/1-661 QILTEHCNEV WFCKFSNDGT KLATGSKDTT VIIWQVDPDT HLLKLLKTLE ENSBTAP00000034100/1-514 QILTEHCNEV WFCKFSNDGT KLATGSKDTT VIIWQVDPDT HLLKLLKTLE 401 450 ENSTTRP00000001549/1-514 GHAYGVSYIA WSPDDNYLVA CGPDDCSELW LWNVQTGELR TKMSQSHEDS BACU001671/1-615 GHAYGVSYIA WSPDDNYLVA CGPDDCSELW LWNVQTGELR TKMSQSHEDS bmy_13231T0/1-571 GHAYGVSYIA WSPDDNYLVA CGPDDCSELW LWNVQTGELR TKMSQSHEDS ENSP00000408108/1-661 GHAYGVSYIA WSPDDNYLVA CGPDDCSELW LWNVQTGELR TKMSQSHEDS ENSBTAP00000034100/1-514 GHAYGVSYIA WSPDDNYLVA CGPDDCSELW LWNVQTGELR TKMSQSHEDS 451 500 ENSTTRP00000001549/1-514 LTSVAWNPDG KRFVTGGQRG QFYQCDLDGN LLDSWEGVRV QCLWCLSDGK BACU001671/1-615 LTSVAWNPDG KRFVTGGQRG QFYQCYV--- ---------- ---------- bmy_13231T0/1-571 LTSVAWNPDG KRFVTG---- ---------- ---------- ---------- ENSP00000408108/1-661 LTSVAWNPDG KRFVTGGQRG QFYQCDLDGN LLDSWEGVRV QCLWCLSDGK ENSBTAP00000034100/1-514 LTSVAWNPDG KRFVTGGQRG QFYQCDLDGN LLDSWEGVRV QCLWCLSDGK 501 550 ENSTTRP00000001549/1-514 TVLASDTHQR IRGYNFEDLT DRNIVQEDHP IMSFTISKNG RLALLNVATQ BACU001671/1-615 ---------- ----SFDKLF FGYRVQEDHP IMSFTISKNG RLALLNVATQ bmy_13231T0/1-571 ---------- ---------- ---------- ---------- ---------- ENSP00000408108/1-661 TVLASDTHQR IRGYNFEDLT DRNIVQEDHP IMSFTISKNG RLALLNVATQ ENSBTAP00000034100/1-514 TVLASDTHQR IRGYNFEDLT DRNIVQEDHP IMSFTISKNG RLALLNVATQ 551 600 ENSTTRP00000001549/1-514 GVHLWDLQDR VLVRKYQGVT QGFYTIHSCF GGHNEDFIAS GSEDHKVYIW BACU001671/1-615 GVHLWDLQDR VLVRKYQGVT QGFYTIHSCF GGHNEDFIAS GSEDHKVYIW bmy_13231T0/1-571 ---------- ---------- ---------- ---------- ---DHKVYIW ENSP00000408108/1-661 GVHLWDLQDR VLVRKYQGVT QGFYTIHSCF GGHNEDFIAS GSEDHKVYIW ENSBTAP00000034100/1-514 GVHLWDLQDR VLVRKYQGVT QGFYTIHSCF GGHNEDFIAS GSEDHKVYIW 601 650 ENSTTRP00000001549/1-514 HKRSELPIAE LTGHTRTVNC VSWNPQIPSM MASASDDGTV RIWGPAPFID BACU001671/1-615 HKRSELPIAE LTGHTRTVNC VSWNPQIPSM MASASDDGTV RIWGPAPFID bmy_13231T0/1-571 HKRSELPIAE LTGHTRTVNC VSWNPQIPSM MASASDDGTV RIWGPAPFID ENSP00000408108/1-661 HKRSELPIAE LTGHTRTVNC VSWNPQIPSM MASASDDGTV RIWGPAPFID ENSBTAP00000034100/1-514 HKRSELPIAE LTGHTRTVNC VSWNPQIPSM MASASDDGTV RIWGPAPFID 651 700 ENSTTRP00000001549/1-514 HQNIE----- ---------- ---------- ---------- ---------- BACU001671/1-615 HQNIEGT--- ---------- ---------- ---------- ---------- bmy_13231T0/1-571 HQNIEAPYLK PAPKLLPDSS NPQSSVHLPT ALNSTTERSL ASRRKGITPE ENSP00000408108/1-661 HQNIE----- ---------- ---------- ---------- ---------- ENSBTAP00000034100/1-514 HQNIE----- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000001549/1-514 -----EECSS MDS-- BACU001671/1-615 --SVPDLQEI QDS-- bmy_13231T0/1-571 FLNVKKDQPN VDTSC ENSP00000408108/1-661 -----EECSS MDS-- ENSBTAP00000034100/1-514 -----EECSS MDS--