KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:07 2014 Check: 00 .. Name: ENSTTRP00000008087/1-753 Len: 820 Check: 3077 Weight: 1.00 Name: ENSBTAP00000034020/1-757 Len: 820 Check: 669 Weight: 1.00 Name: bmy_14252T0/1-508 Len: 820 Check: 3373 Weight: 1.00 Name: ENSP00000356840/1-766 Len: 820 Check: 4880 Weight: 1.00 Name: BACU004241/1-689 Len: 820 Check: 1774 Weight: 1.00 // 1 50 ENSTTRP00000008087/1-753 ---------- -MLDCSDYVL DSRMNNPSET SKPSMESGDG NT-------- ENSBTAP00000034020/1-757 ---------- -MLDCSDCVL DSRMNNPSET GKPSMESGDS NT-------- bmy_14252T0/1-508 ---------- ---------- ---MNNPSET SKPSMESGDG NTVMPNGCPT ENSP00000356840/1-766 MADGGAASQD ESSAAAAAAA DSRMNNPSET SKPSMESGDG NT-------- BACU004241/1-689 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008087/1-753 ---------- ---------- -GTQTNGLDF QKQPVPVGGA ISTAQAQAFL ENSBTAP00000034020/1-757 ---------- ---------- -GTQTNGLDF QKQPVPVGGA ISTAQAQAFL bmy_14252T0/1-508 FCELHLEFVL LIKLYYFACF LGTQTNGLDF QKQPVPVGGA ISTAQAQAFL ENSP00000356840/1-766 ---------- ---------- -GTQTNGLDF QKQPVPVGGA ISTAQAQAFL BACU004241/1-689 ---------- ---------- -GTQTNGLDF QKQPVPVGGA ISTAQAQAFL 101 150 ENSTTRP00000008087/1-753 GHLHQVQLAG TSLQAAAQSL NVQSKSNEES GDSQQPSQPS QQPSVQAAIP ENSBTAP00000034020/1-757 GHLHQVQLAG TSLQAAAQSL NVQSKPNEES GDSQQPSQPS QQPSVQAAIP bmy_14252T0/1-508 GHLHQ----- ---------- ---------- ---------- ---------- ENSP00000356840/1-766 GHLHQVQLAG TSLQAAAQSL NVQSKSNEES GDSQQPSQPS QQPSVQAAIP BACU004241/1-689 GHLHQVQLAG TSLQAAAQSL NVQSKSSEES GDSQQPSQPS QQPSVQAAIP 151 200 ENSTTRP00000008087/1-753 QTQLMLAGGQ ITGLTLTPAQ QQLLLQQAQA QAQLLAAAVQ QHSASQQHSA ENSBTAP00000034020/1-757 QTQLMLAGGQ ITGLTLTPAQ QQLLLQQAQA QAQLLAAAVQ QHSASQQHSA bmy_14252T0/1-508 ---------- ---LTLTPAQ QQLLLQQAQA QAQLLAAAVQ QHSASQQHSA ENSP00000356840/1-766 QTQLMLAGGQ ITGLTLTPAQ QQLLLQQAQA QAQLLAAAVQ QHSASQQHSA BACU004241/1-689 QTQLMLAGGQ ITGLTLTPAQ QQLLLQQAQA QAQLLAAAVQ QHSASQQHSA 201 250 ENSTTRP00000008087/1-753 AGATISASAA TPMTQIPLSQ PIQIAQ---- ---------- ---------D ENSBTAP00000034020/1-757 AGATISASAA TPMTQIPLSQ PIQIAQ---- ---------- ---------D bmy_14252T0/1-508 AGATISASAA TPMTQIPLSQ PIQIAQGKVS RDNKSLFKRH RQFYQGGKKD ENSP00000356840/1-766 AGATISASAA TPMTQIPLSQ PIQIAQ---- ---------- ---------D BACU004241/1-689 AGATISASAA TPMTQIPLSQ PIQIAQ---- ---------- ---------D 251 300 ENSTTRP00000008087/1-753 LQQLQQLQQQ NLNLQQFVLV HPTTNLQPAQ FIISQTPQGQ QGLLQAQNLL ENSBTAP00000034020/1-757 LQQLQQLQQQ NLNLQQFVLV HPTTNLQPAQ FIISQTPQGQ QGLLQAQNLL bmy_14252T0/1-508 LQQLQQLQQQ NLNLQQFVLV HPTTNLQPAQ FIISQTPQGQ QGLLQAQNLL ENSP00000356840/1-766 LQQLQQLQQQ NLNLQQFVLV HPTTNLQPAQ FIISQTPQGQ QGLLQAQNLL BACU004241/1-689 LQQLQQLQQQ NLNLQQFVLV HPTTNLQPAQ FIISQTPQGQ QGLLQAQNLL 301 350 ENSTTRP00000008087/1-753 TQLPQQSQAN LLQSQPSITL TSQXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000034020/1-757 TQLPQQSQAN LLQSQPSIAL TSQPATPTRT IAATPIQTLP QSQATPKRID bmy_14252T0/1-508 TQLPQQSQAN LLQSQPSITL TSQPATPTRT IAATPIQTLP QSQSTPKRID ENSP00000356840/1-766 TQLPQQSQAN LLQSQPSITL TSQPATPTRT IAATPIQTLP QSQSTPKRID BACU004241/1-689 TQLPQQSQAN LLQSQPSITL TSQPATPTRT IAATPIQTLP QSQSTPKRID 351 400 ENSTTRP00000008087/1-753 XXXSEEPSDL EELEQFAKTF KQRRIKLGFT QGDVGLAMGK LYGNDFSQTT ENSBTAP00000034020/1-757 TPSLEEPSDL EELEQFAKTF KQRRIKLGFT QGDVGLAMGK LYGNDFSQTT bmy_14252T0/1-508 TPSLEEPSDL EELEQFAKTF KQRRIKLGFT QGDVGLAMGK LYGNDFSQTT ENSP00000356840/1-766 TPSLEEPSDL EELEQFAKTF KQRRIKLGFT QGDVGLAMGK LYGNDFSQTT BACU004241/1-689 TPSLEEPSDL EELEQFAKTF KQRRIKLGFT QGDVGLAMGK LYGNDFSQTT 401 450 ENSTTRP00000008087/1-753 ISRFEALNLS FKNMCKLKPL LEKWLNDAXX XXXXXXXXXX XXXXXX--XX ENSBTAP00000034020/1-757 ISRFEALNLS FKNMCKLKPL LEKWLNDAEN LSSDSALSSP SALNSPGMGI bmy_14252T0/1-508 ISRFEALNLS FKNMCKLKPL LEKWLNDAEN LSSDSALSSP SALNSPGMGI ENSP00000356840/1-766 ISRFEALNLS FKNMCKLKPL LEKWLNDAEN LSSDSSLSSP SALNSP--GI BACU004241/1-689 ISRFEALNLS FKNMCKLKPL LEKWLNDAEN LSSDSALSSP SALNSPGMGI 451 500 ENSTTRP00000008087/1-753 XXXXXXXXXX XXXXXXXXXX XXXXXXXNQQ PTSEEITMIA DQLNMEKEVI ENSBTAP00000034020/1-757 EGLNRRRKKR TSIETNIRVA LEKSFLENQK PTSEEITMIA DQLNMEKEVI bmy_14252T0/1-508 EGLNRRRKKR TSIETNIRVA LEKSFLENQK PTSEEITMIA DQLNMEKEVI ENSP00000356840/1-766 EGLSRRRKKR TSIETNIRVA LEKSFLENQK PTSEEITMIA DQLNMEKEVI BACU004241/1-689 EGLNRRRKKR TSIETNIRVA LEKSFLENQK PTSEEITMIA DQLNMEKEVI 501 550 ENSTTRP00000008087/1-753 RVWFCNRRQK EKRINPPSSG GTSSSPIKAI FPSPTSLVAT TPSLVTSSAA ENSBTAP00000034020/1-757 RVWFCNRRQK EKRINPPSSG GTSSSPIKAV FPSPASLVAT TPSLVTSSAA bmy_14252T0/1-508 RVWFCNRRQK EKRINPPSSG GTSSSPIKAI FPSPTSLVAT TPSLVTSSAA ENSP00000356840/1-766 RVWFCNRRQK EKRINPPSSG GTSSSPIKAI FPSPTSLVAT TPSLVTSSAA BACU004241/1-689 RVWFCNRRQK EKRINPPSSG GTSSSPIKAI FPSPTSLVAT TPSLVTSSAA 551 600 ENSTTRP00000008087/1-753 TTLTVNPVLP LTSAAVTNLS VTGTTDTTSN NTAAVISTAP PA-SAVTSHS ENSBTAP00000034020/1-757 TTLTVNPVLP LTSAAVTNLS VTGTTDTTAN NTATVISTAP PAPSAVTSPA bmy_14252T0/1-508 TTLTVNPVLP LTSAAVTNLS VTGKQQ---- ---------- ---------- ENSP00000356840/1-766 TTLTVSPVLP LTSAAVTNLS VTGTSDTTSN NTATVISTAP PASSAVTSPS BACU004241/1-689 TTLTVNPVLP LTSAAVTNLS VT-------- ---------- ---------- 601 650 ENSTTRP00000008087/1-753 LSPSPSASAS TSEASSASET STTHTTSTPL SSPLGTSQVM VTASGLQTAA ENSBTAP00000034020/1-757 LSPSPSASAA TSEASSASET STTQTTSAPL SSPLGTSQVM VTASGLQTAA bmy_14252T0/1-508 ---------- ---------- ---------- ---------- ---------- ENSP00000356840/1-766 LSPSPSASAS TSEASSASET STTQTTSTPL SSPLGTSQVM VTASGLQTAA BACU004241/1-689 --------AS TSEASSASET STTHTTSTPL SSPLGTSQVM VTASGLQTAA 651 700 ENSTTRP00000008087/1-753 AAALQGAAQL PANASLAAMA AAAGLNPGLM APSQFAAGGA LLSLNPGTLG ENSBTAP00000034020/1-757 AAALQGAAQL PANASLAAMA AAAGLNPGLM APSQFAAGGA LLSLNPGTLG bmy_14252T0/1-508 ---------- PGRAAVRQMI ---------- ---------- ---------- ENSP00000356840/1-766 AAALQGAAQL PANASLAAMA AAAGLNPSLM APSQFAAGGA LLSLNPGTLS BACU004241/1-689 AAALQGAAQL PANASLAAMA AAAGLNPGLM APSQFAAGGA LLSLNPGTLG 701 750 ENSTTRP00000008087/1-753 GALSPALMSN STLATIQALA SGGSLPITSL DATGNLVFAN AGGAPNIVTA ENSBTAP00000034020/1-757 GALSPALMSN STLATIQALA SGGSLPITSL DATGNLVFAN AGGAPNIVTA bmy_14252T0/1-508 ---------- ---------- ---------- ---------- ---------- ENSP00000356840/1-766 GALSPALMSN STLATIQALA SGGSLPITSL DATGNLVFAN AGGAPNIVTA BACU004241/1-689 GALSPALMSN STLATIQALA SGGSLPITSL DATGNLVFAN AGGAPNIVTA 751 800 ENSTTRP00000008087/1-753 PLFLNPQNLS LLTSNPVSLV SAAAASAGNT GPVASLHATS TSAEPLQTSL ENSBTAP00000034020/1-757 PLFLTPQNLS LLTSNPVSLV SAAATSAGNS GPVASLHATS TSAESIQNSL bmy_14252T0/1-508 ---------- ---------- ---------- GPC------- ---------- ENSP00000356840/1-766 PLFLNPQNLS LLTSNPVSLV SAAAASAGNS APVASLHATS TSAESIQNSL BACU004241/1-689 PLFLNPQNLS LLTSNPVSLV SAAAASAGNP GPVASLHATS TSAEPIQTSL 801 850 ENSTTRP00000008087/1-753 FTAASASGAA S-TTTASKAQ ENSBTAP00000034020/1-757 FTVASASGAA STTTTASKAQ bmy_14252T0/1-508 ---------- ---------- ENSP00000356840/1-766 FTVASASGAA STTTTASKAQ BACU004241/1-689 FTAASASGAA A-TTTASKAQ