KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:55 2014 Check: 00 .. Name: ENSP00000344465/1-1037 Len: 1125 Check: 4180 Weight: 1.00 Name: ENSTTRP00000013764/1-1038 Len: 1125 Check: 3214 Weight: 1.00 Name: ENSBTAP00000033855/1-1040 Len: 1125 Check: 778 Weight: 1.00 Name: bmy_03434T0/1-1125 Len: 1125 Check: 9695 Weight: 1.00 Name: BACU003919/1-890 Len: 1125 Check: 867 Weight: 1.00 // 1 50 ENSP00000344465/1-1037 MSPPLCPLLL LAVGLRLAGT LNPSDPNTCS FWESFTTTTK ESHSRPFSLL ENSTTRP00000013764/1-1038 MSSPLRALFL LALGLGLAGT LNPKDPNTCS FWESFTTTTK ESHSRPFSLL ENSBTAP00000033855/1-1040 MSPPLRALLL LALELGLAAT LNPKDPNTCS FWESFTTTTK ESLSRPFSLL bmy_03434T0/1-1125 MSPPLRALFL LALGLGLAGT LNPKDPNTCS FWESFTTTTK ESHSRPFSLL BACU003919/1-890 MSPPLRALFL LALGLGLAGT LNPKDPNTCS FWESFTTTTK ESHSRPFSLL 51 100 ENSP00000344465/1-1037 PSEPCERPWE GPHTCPQPTV VYRTVYRQVV KTDHRQRLQC CHGFYESRGF ENSTTRP00000013764/1-1038 PSEPCDRPWE SRHACPPPTV VYRTVYRQVV KTEHRMRLQC CQGFYESSGA ENSBTAP00000033855/1-1040 PSEPCSRPWE SPHTCPRPTV VYRTVYRQVV KTEHRMRLQC CRGFYESRGA bmy_03434T0/1-1125 PSEPCDRPWE SPHTCPRPTV VYRTVYRQVV KTEHRMRLQC CRGFYESSGA BACU003919/1-890 PSEPCDRPWE SPHTCPRPTV VYRTVYRQVV KTEHRMRLQC CRGFYESSGA 101 150 ENSP00000344465/1-1037 CVPLCAQECV HGRCVAPNQC QCVPGWRGDD CSSECAPGMW GPQCDKPCSC ENSTTRP00000013764/1-1038 CVPLCARECV HGRCVAPNQC QCVQDWRGDD CSSACALGVW GPQCDKPCNC ENSBTAP00000033855/1-1040 CVPLCAQECV HGRCVAPNQC QCVQDWRGDD CSSACAPGVW GPKCDKPCNC bmy_03434T0/1-1125 CVPLCAWECV HGRCMAPNQC QCVQDWRGDD CSSACAPGVW GPQCDKPCNC BACU003919/1-890 CVPLCAQECV HGRCMAPNQC QCVQDWRGDD CSSACAPGVW GPQCDKPCNC 151 200 ENSP00000344465/1-1037 GNNSSCDPKS GVCSCPSGLQ PPNCLQPCTP GYYGPACQFR CQCHGAPCDP ENSTTRP00000013764/1-1038 GNSSSCDPKS GACSCPSGLQ PPHCFRPCSP GRYGPACQFS CQCHGAPCDP ENSBTAP00000033855/1-1040 GNSSSCDPKS GACSCPSGLQ PPHCLQPCSP GLYGPACQFS CQCHGAPCNP bmy_03434T0/1-1125 GNSSSCDPKS GACSCASGLQ PPHCFRPCSP GRYGPACQFS CQCHGAPCDP BACU003919/1-890 GNSSSCDPKS GACSCASGLQ PPHCSRPCSP GRYGPACQFS CQCHGAPCDP 201 250 ENSP00000344465/1-1037 QTGACFCPAE RTGPSCDVSC SQGTSGFFCP STHSCQNGGV FQTPQGSCSC ENSTTRP00000013764/1-1038 QTGACLCPTE RTGPSCEVSC SQDSVGFFCP STPPCQNGGV FQASRGSCSC ENSBTAP00000033855/1-1040 QTGACLCPPE RTGPTCEVSC SPSSVGFSCP STPPCQNGGV FQASQDSCSC bmy_03434T0/1-1125 QTGACLCPPE RTGPSCEVSC SQHSVGFSCP STPPCQNGGV FQASRDSCSC BACU003919/1-890 QTGACLCPPE RTGPSCEVSC SQDSVGFSCP STPPCQNGGV FQASRGSCSC 251 300 ENSP00000344465/1-1037 PPGWMGTICS LPCPEGFHGP NCSQECRCHN GGLCDRFTGQ CRCAPGYTGD ENSTTRP00000013764/1-1038 PPGWMGTICS LPCPEGSYGP NCSQECRCHN GGLCDRFTGQ CRCAPGYTGD ENSBTAP00000033855/1-1040 PPGWTGTICS LPCPEGFHGP NCSQECRCHN GGLCDRFTGQ CRCAPGYTGD bmy_03434T0/1-1125 PPGWMGTICS LPCPEGSYGP NCSQECRCHN GGLCDRFTGQ CHCAPGYTGD BACU003919/1-890 PPGWMGTICS LPCPEGSYGP NCSQECRCHN GGLCDRFTGQ CHCAPGYTGD 301 350 ENSP00000344465/1-1037 RCREECPVGR FGQDCAETCD CAPDARCFPA NGACLCEHGF TGDRCTDRLC ENSTTRP00000013764/1-1038 RCREECPVGR FGQDCAETCD CATGARCFPA NGACLCEHGF TGDRCAERLC ENSBTAP00000033855/1-1040 RCREECPVGR FGQDCAETCD CAPGARCFPA NGACLCEHGF TGDRCAERLC bmy_03434T0/1-1125 RCREECPVGR FGQDCAETCD CATGARCFPA NGACLCEHGF TGDRCAERLC BACU003919/1-890 RCREECPVGR FGQDCAETCD CATGARCFPA NGACLCEHGF TGDRCAERLC 351 400 ENSP00000344465/1-1037 PDGFYGLSCQ APCTCDREHS LSCHPMNGEC SCLPGWAGLH CNESCPQDTH ENSTTRP00000013764/1-1038 PDGLYGLSCQ MPCTCDPEHS LNCHPMSGEC SCLPGWAGLH CNESCPQDTH ENSBTAP00000033855/1-1040 PDGLYGLSCQ VPCTCDPEHS LSCHPMSGEC SCLPGWAGLH CNESCPQDTH bmy_03434T0/1-1125 PDGLYGLSCQ MPCTCDPEHS LNCHPMSGEC SCLPGWAGLH CNESCPQDTH BACU003919/1-890 PDGLYGLSCQ MPCTCDPEHS LN-------- ---------- ---------- 401 450 ENSP00000344465/1-1037 GPGCQEHCLC LHGGVCQATS GLCQCAPGYT GPHCASLCPP DTYGVNCSAR ENSTTRP00000013764/1-1038 GPGCQEHCLC LHGGVCQPDS GLCRCAPGYT GPHCASLCPP DTYGVNCSAR ENSBTAP00000033855/1-1040 GPGCQEHCLC LHGGVCQPDS GLCRCAPGYT GPHCASLCPP DTYGVNCSQR bmy_03434T0/1-1125 GPGCQEHCLC LHGGVCQPDS GLCRCAPGYT GPHCASLCPP DTYGVNCSAR BACU003919/1-890 ---------- ---------- ---------- ------LCPP DTYGVNCSAR 451 500 ENSP00000344465/1-1037 CSCENAIACS PIDGECVCKE GWQRGNCSVP CPPGTWGFSC NASCQCAHEA ENSTTRP00000013764/1-1038 CSCENAIACS PIDGTCVCKE GWQHGNCSVP CPPGTWGFGC NASCQCAHEA ENSBTAP00000033855/1-1040 CSCENAIACS PIDGTCVCKE GWQRGNCSVP CPPGTWGFGC NASCQCAHEA bmy_03434T0/1-1125 CSCENAIACS PIDGACVCKE GWQHGNCSVP CPPGTWGFGC NASCQCAHEA BACU003919/1-890 CSCENAIACS PIDGACVCKE GWQHGNCSVP CPPGTWGFGC NASCQCAHEA 501 550 ENSP00000344465/1-1037 VCSPQTGACT CTPGWHGAHC QLPCPKGQFG EGCASRCDCD HSDGCDPVHG ENSTTRP00000013764/1-1038 ACSPQTGACT CTPGWHGTHC QFPCLKGMFG EGCASRCDCD HSDGCDPVHG ENSBTAP00000033855/1-1040 ACSPQTGACT CTPGWHGTNC QLPCPKGQFG EGCASRCDCD HADGCDPVHG bmy_03434T0/1-1125 ACSPQTGACT CTPGWHGTHC QLPCLKGQFG DGCASRCDCD HSDGCDPVHG BACU003919/1-890 ACSPQTGACT CTPGWHGTHC QLPCLKGQFG EGCASRCDCD HSDGCDPVHG 551 600 ENSP00000344465/1-1037 RCQCQAGWMG ARCHLSCPEG LWGVNCSNTC TCKNGGTCLP ENGNCVCAPG ENSTTRP00000013764/1-1038 HCQCQAGWTG TRCHLPCPEG FWGTNCSNTC TCKNGGTCIP ENGNCVCAPG ENSBTAP00000033855/1-1040 HCQCQAGWTG TRCHQPCPEG FWGANCSNAC ACRNGGTCIP KNGNCVCAPG bmy_03434T0/1-1125 HCQCQAGWTG TRCHLPCPEG FWGANCSNTC TCKNGGTCIP ENGNCVCAPG BACU003919/1-890 HCQCQAGWTG TRCHLPCPEG FWGANCSNTC TCKNGGTCIP ENGNCVCAPG 601 650 ENSP00000344465/1-1037 FRGPSCQRSC QPGRYGKRCV PCKCANHSFC HPSNGTCYCL AGWTGPDCSQ ENSTTRP00000013764/1-1038 FRGPSCQRSC QPGRYGKRCV PCKCANHSSC HPSNGTCYCM AGWTGPDCSQ ENSBTAP00000033855/1-1040 FRGPFCQKSC QPGRYGKRCV PCKCANHSSC HPSNGTCYCL AGWTGPDCSQ bmy_03434T0/1-1125 FRGPSCQRSC QPGRYGKRCV PCKCANHSSC HPSNGTCYCM AGWTGPDCSQ BACU003919/1-890 FRGPSCQRSC QPGRYGKRCV PCKCANHSSC HPSNGTCYCM AGWTGPDCSQ 651 700 ENSP00000344465/1-1037 PCPPGHWGEN CAQTCQCHHG GTCHPQDGSC ICPLGWTGHH CLEGCPLGTF ENSTTRP00000013764/1-1038 PCPLGHWGAN CAQLCHCRHG GTCHPQHGSC FCPPGRTGHL CLEGCSPGVF ENSBTAP00000033855/1-1040 PCPLGHWGAN CAQLCQCRHG GTCHPQDGSC FCPPGWTGHL CLEGCSPGMF bmy_03434T0/1-1125 PCPLGHWGAN CAQLCQCRHG GTCHPQHGSC FCPPGRTGHL CLEGCSPGMF BACU003919/1-890 R--------- ---------- ---------- ---------- ---------- 701 750 ENSP00000344465/1-1037 GANCSQPCQC GPGEKCHPET GACVCPPGHS GAPCRIGIQE PFTVMPTTPV ENSTTRP00000013764/1-1038 GANCSQPCQC GPGERCHPET GACVCPPGHS GAPCRIGSQE PFTMMPTSPV ENSBTAP00000033855/1-1040 GANCSQPCQC GPGERCHPET GACVCPPGHS GAPCRIGSQE PITMMPTPPV bmy_03434T0/1-1125 GANCSQPCQC GPGERCHPET GACVCPPGHS GAPCRIGSQE PFTMTPTSPV BACU003919/1-890 ---------- ---------- ---------- -------SQE PFTMTPTSPV 751 800 ENSP00000344465/1-1037 AYNSLGAVIG IAVLGSLVVA LVALFIGYRH WQKGKEHHHL AVAYSSGRLD ENSTTRP00000013764/1-1038 AYNSLGAVIG IAVLGSLVVA LVALFIGYRH WQKGKAHQHL AVAYSSGRLD ENSBTAP00000033855/1-1040 AYNSLGAVIG IAVLGSLVVA LVALFIGYRH WQKGKEHQHL AVGYSSGRLD bmy_03434T0/1-1125 AYNSLGAVIG IAVLGSLVVA LVALFIGYRH WQKGKEHQHL AVAYSSGRLD BACU003919/1-890 AYNSLGAVIG IAVLGSLVVA LVALFIGYRH WQKGKEHQHL AVAYSSGRLD 801 850 ENSP00000344465/1-1037 GSEYVMPDVP PSYSHYYSNP SYHTLSQCSP NPPPPNK--- ---------- ENSTTRP00000013764/1-1038 GSEYVMPDVP PSYSHYYSNP SYHTLSQCSP NPPPPNK--- ---------- ENSBTAP00000033855/1-1040 GSEYVMPDVP PSYSHYYSNP SYHTLSQCSP NPPPAKK--- ---------- bmy_03434T0/1-1125 GSEYVMPDVP PSYSHYYSNP SYHTLSQCSP NPPPPNKVSV GGGDALWMPC BACU003919/1-890 GSEYVMPDVP PSYSHYYSNP SYHTLSQCSP NPPPPNK--- ---------- 851 900 ENSP00000344465/1-1037 ---------- ---------- ----VPGP-L FASLQNPERP GGAQGHDNHT ENSTTRP00000013764/1-1038 ---------- ---------- -----XXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000033855/1-1040 ---------- ---------- ----VPGSQL FASLQASERP GGAHGLDNHA bmy_03434T0/1-1125 GHSPVLRKAP AVHVPLPVPP LPCQVPGSQL FASLQAPERP GGALGHDNHA BACU003919/1-890 ---------- ---------- ----VPGSQL FASLQAPERP GGALGHDNHA 901 950 ENSP00000344465/1-1037 TLPADWKHRR EPPPGPLDRG SS-------- --RLDRSYS- ---------- ENSTTRP00000013764/1-1038 XXXXXXXXXX XXXXXXXXXX XX-------- --XXXRSYS- ---------- ENSBTAP00000033855/1-1040 TLPADWKHRR EPPAGPLDRG SS-------- --RLDRSYS- ---------- bmy_03434T0/1-1125 TLPADWKHRR EPPPGPLDRG RSLGAKASGE GGRVAAAWTE ATAVATATGM BACU003919/1-890 TLPADWKHRR EPPPGPLDRG SS-------- --RLDRSYS- ---------- 951 1000 ENSP00000344465/1-1037 ------YSYS NGPG------ ---------- -----PFYNK --GLISEEEL ENSTTRP00000013764/1-1038 ----CSYSNR NGPG------ ---------- ------FYSK --GPISEEGL ENSBTAP00000033855/1-1040 ----CSYSNS NGPG------ ---------- -----PFYSK --GPISEEGL bmy_03434T0/1-1125 ALAPSTVKVR AGQGGAGERG RELRWGLGAS ASTEPDFFPL SLGPISEEGL BACU003919/1-890 ----CSYSNR NGPG------ ---------- -----PFYSK --GPISEEGL 1001 1050 ENSP00000344465/1-1037 GASVASLSSE NPYATIRDLP SLPGGPRESS YMEMKGPPSG SPPRQPPQFW ENSTTRP00000013764/1-1038 GASVASLSSE NPYATIRDLP SLLGSPRESS YMEMKGPPSG SPPRQPPQLR ENSBTAP00000033855/1-1040 GASMASLSSE NPYATIRDLP SLLGSPRESS YVEMKGPSSG SPPRQLPQLP bmy_03434T0/1-1125 GASVASLSSE NPYATIRDLP GLLGSPRESS YMEMKGPPSG SPPRQPPQLR BACU003919/1-890 GASVASLSSE NPYATIRDLP GLLGSPRESS YMEMKGPPSG SPPRQPPQLR 1051 1100 ENSP00000344465/1-1037 DSQRRRQPQP QRDSGTYEQP SPLIHDRDSV GSQPPLPPGL PPGHYDSPKN ENSTTRP00000013764/1-1038 DSQRRRHPQP ERDSGTYEQP SPLTHDRDSV GSQPPLPPGL PPGHYDSPKN ENSBTAP00000033855/1-1040 DSQRRRHPQP QRDSGTYEQP SPLVHDRDSV GSQPPLPPGL PPGHYDSPKN bmy_03434T0/1-1125 DSQRRRHPQP ERDSGTYEQP SPLTHDRDSV GSQPPMPPGL PPGHYDSPKN BACU003919/1-890 DSQRRRHPQP ERDSGTYEQP SPLTHDRDSV GSQPPLPPGL PPGHYDSPKN 1101 1150 ENSP00000344465/1-1037 SHIPGHYDLP PVRHPPSPPL RRQDR ENSTTRP00000013764/1-1038 SHIPGHYDLP PVRHPPSPPL RRQDR ENSBTAP00000033855/1-1040 SHIPVHYDLP PVRHPPSPPV RRQDR bmy_03434T0/1-1125 SHIPGHYDLP PVRHPPSPPL RRQDR BACU003919/1-890 SHIPGHYDLP PVRHPPSPPL RRQDR