KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:43:53 2014 Check: 00 .. Name: ENSP00000354837/1-986 Len: 1088 Check: 1909 Weight: 1.00 Name: ENSTTRP00000012656/1-987 Len: 1088 Check: 6812 Weight: 1.00 Name: ENSBTAP00000033820/1-987 Len: 1088 Check: 6114 Weight: 1.00 Name: bmy_03399T0/1-960 Len: 1088 Check: 1732 Weight: 1.00 Name: BACU003952/1-1087 Len: 1088 Check: 5577 Weight: 1.00 // 1 50 ENSP00000354837/1-986 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012656/1-987 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000033820/1-987 ---------- ---------- ---------- ---------- ---------- bmy_03399T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU003952/1-1087 MNKDVPEVFL TGGDLVPQGH TRRCLSVVES REQLEENEEE EEEGEKKEGD 51 100 ENSP00000354837/1-986 ---------- ------MSRI ESLTRARIDR SRELA----- ---------- ENSTTRP00000012656/1-987 ---------M CCCCGCCPLL AHLERGSLG- ---------- ---------- ENSBTAP00000033820/1-987 ---------- ------MSRI ESLTRARIDR SRELA----- ---------- bmy_03399T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU003952/1-1087 GFHAVPLRRS RAFRAHSHNY DPFKRHSWGP GKELQDPLSS CSQLEGGSGT 101 150 ENSP00000354837/1-986 ---------- ---------S KTREKEKMKE AKDARYTNGH LFTTISVSGM ENSTTRP00000012656/1-987 ---------- ---------E RTREKEKMKE AKDARYTNGH LFTTISVSGM ENSBTAP00000033820/1-987 ---------- ---------S KTREKEKMKE AKDARYTNGH LFTTISVSGM bmy_03399T0/1-960 ---------- ---------- -------MKE AKDARYTNGH LFTTISVSGM BACU003952/1-1087 WAGSSLRRTL SFILGMTGKA KTREKEKMKE AKDARYTNGH LFTTISVSGM 151 200 ENSP00000354837/1-986 TMCYACNKSI TAKEALICPT CNVTIHNRCK DTLANCTKVK QKQQKAALLK ENSTTRP00000012656/1-987 TMCYACNKSI TAKEALICPT CNVTIHNRCK DTLANCTKVK QKQQKAALLK ENSBTAP00000033820/1-987 TMCYACNKSI TAKEALICPT CNVTIHNRCK DTLANCTKVK QKQQKAALLK bmy_03399T0/1-960 TMCYACNKSI TAKEALICPT CNVTIHNRCK DTLANCTKVK QKQQKAALLK BACU003952/1-1087 TMCYACNKSI TAKEALICPT CNVTIHNRCK DTLANCTKVK QKQQKAALLK 201 250 ENSP00000354837/1-986 NNTALQSVSL RSKTTIRERP SSAIYPSDSF RQSLLGSRRG RSSLSLAKSV ENSTTRP00000012656/1-987 NNTALQSVSL RSKTTTRERP SSAIYPSDSF RQSLLGSRRG RSSLSLAKSV ENSBTAP00000033820/1-987 NNTALQSVSL RSKTTTRERP SSAIYPSD-I RQSLLGSRRG RSSLSLAKSV bmy_03399T0/1-960 NNTALQSVSL RSKTTTRERP SSAIYPSDSF RQSLLGSRRG RSSLSLAKSV BACU003952/1-1087 NNTALQSVSL RSKTTTRERP SSAIYPSDSF RQSLLGSRRG RSSLSLAKSV 251 300 ENSP00000354837/1-986 STTNIAGHFN DESPLGLRRI LSQSTDSLNM RNRTLSVESL IDE-AEVIYS ENSTTRP00000012656/1-987 STTNIAGHFN DESPLGLRRI LSQSTDSLNM RNRTLSVESL IDE-AEVIYN ENSBTAP00000033820/1-987 STTNIAGHFN DESPLGLRRI LSQSTDSLNM RNRTLSVESL IDEGAEVIYN bmy_03399T0/1-960 STTNIAGHFN DESPLGLRRI LSQSTDSLNM RNRTLSVESL IDEGAEVIYN BACU003952/1-1087 STTNIAGHFN DESPLGLRRI LSQSTDSLNV RNRTLSVESL IDEGAEVIYN 301 350 ENSP00000354837/1-986 ELMSDFEMDE KDFAADSWSL AVDSSFLQQH KKEVMKQQDV IYELIQTELH ENSTTRP00000012656/1-987 ELMSDFEMDE KDFAADSWSL AVDSNFLQQH KKEVMKQQDV IYELIQTELH ENSBTAP00000033820/1-987 ELMSDFEMDE KDFTADSWSL AVDSSFLQQH KKEVMKQQDV IYELIQTELH bmy_03399T0/1-960 ELMSDFEMDE KDFAADSWSL AVDSNFLQQH KKEVMKQQDV IYELIQTELH BACU003952/1-1087 ELMSDFEMDE KDFAADSWSL AVDSNFLQQH KKEVMKQQDV IYELIQTELH 351 400 ENSP00000354837/1-986 HVRTLKIMTR LFRTGMLEEL HLEPGVVQGL FPCVDELSDI HTRFLSQLLE ENSTTRP00000012656/1-987 HVRTLKIMTR LFRTGMLEEL QLEPGVVQGL FPCVDELSDI HTRFLSQLLE ENSBTAP00000033820/1-987 HVRTLKIMTR LFRTGMLEEL QLEPGVVQGL FPCVDELTDI HTRFLSQLLD bmy_03399T0/1-960 HVRTLKIITR LFRTGMLEEL QLEPGVVQGL FPCVDELSDI HTRFLSQMLE BACU003952/1-1087 HVRTLKIMTR LFRTGMLEEL QLEPGVVQGL FPCVDELSDI HTRFLSQMLE 401 450 ENSP00000354837/1-986 RRRQALCPGS TRNFVIHRLG DLLISQFSGP SAEQMCKTYS EFCSRHSKAL ENSTTRP00000012656/1-987 RRRQALCPGS PRNFVIHRLG DLLINQFSGP SAEQMRKTYS EFCSRHTKAL ENSBTAP00000033820/1-987 RRRQALCPGS TRNFVIHRLG DLLISQFSGP SAEQMRKTYS EFCSRHTKAL bmy_03399T0/1-960 RRRQALCPGS TRNFVIHRLG DLLISQFSGP SAEQMRKTYS EFCSRHTKAL BACU003952/1-1087 RRRQALCPGS TRNFVIHRLG DLLISQFSGP SAEQMRKTYS EFCSRHTKAL 451 500 ENSP00000354837/1-986 KLYKELYARD KRFQQFIRKV TRPAVLKRHG VQECILLVTQ RITKYPLLIS ENSTTRP00000012656/1-987 KLYKELYARD KRFQQFIRKV TRSAVLKRHG VQECILLVTQ RITKYPVLIN ENSBTAP00000033820/1-987 KLYKELYARD KRFQQFIRKV TRSAVLKRHG VQECILLVTQ RITKYPVLIN bmy_03399T0/1-960 KLYKELYARD KRFQQFIRKV TRSAVLKRHG VQECILLVTQ RITKYPVLIN BACU003952/1-1087 KLYKELYARD KRFQQFIRKV TRSAVLKRHG VQECILLVTQ RITKYPVLIN 501 550 ENSP00000354837/1-986 RILQHSHGIE EERQDLTTAL GLVKELLSNV DEGIYQLEKG ARLQEIYNRM ENSTTRP00000012656/1-987 RILQHSHGIE EERQDLTTAL GLVKELLSNV DQDVHELEKG ARLQEIYNRM ENSBTAP00000033820/1-987 RILQHSHGME EERQDLTKAL GLVKELLSNV DQDVHELEKG ARLQEIYNRM bmy_03399T0/1-960 RILQHSHGIE EERQDLTTAL GLVKELLSNV DQDVHELEKG ARLQEIYNRM BACU003952/1-1087 RILQHSHGIE EERQDLTTAL GLVKELLSNV DQDVHELEKG ARLQEIYNRM 551 600 ENSP00000354837/1-986 DPRAQTPVPG KGPFGREELL RRKLIHDGCL LWKTATGRFK DVLVLLMTDV ENSTTRP00000012656/1-987 DPRAQAPVPG KGPFGREELL RRKLIHDGCL LWKTATGRFK XXXXXXXXXX ENSBTAP00000033820/1-987 DPRAQAPVPG KGPFGREELL RRKLIHDGCL LWKTATGRFK DVLMLLMTDV bmy_03399T0/1-960 DPRAQTPVPG KGPFGREELL RRKLIHDGCL LWKTATGRFK DVLMLLMTDV BACU003952/1-1087 DPRAQAPVPG KGPFGREELL RRKLIHDGCL LWKTATGRFK DVLMLLMTDV 601 650 ENSP00000354837/1-986 LVFLQEKDQK YIFPTLDKPS VVSLQNLIVR DIANQEKGMF LISAAPPEMY ENSTTRP00000012656/1-987 XXXXXXXXXX XXXXXXDKPS VVSLQNLIVR DIANQEKGMF LISAAPPEMY ENSBTAP00000033820/1-987 LVFLQEKDQK YIFPALDKPS VVSLQNLIVR DIANQEKGMF LISAAPPEMY bmy_03399T0/1-960 LVFLQEKDQK YIFPALDKPS VVSLQNLIVR DIANQEKGMF LISAAPPEMY BACU003952/1-1087 LVFLQEKDQK YIFPALDKPS VVSLQNLIVR DIANQEKGMF LISAAPPEMY 651 700 ENSP00000354837/1-986 EVHTASRDDR STWIRVIQQS VRTCPSREDF PLIETEDEAY LRRIKMELQQ ENSTTRP00000012656/1-987 EVHTASRDDR STWIRVIQQS VRVCPSREDF PLIETEDEAY LRRIKMELQQ ENSBTAP00000033820/1-987 EVHTASRDDR STWIRVIQQS VRVCPSREDF PLIETEDEAY LRRIKMELQQ bmy_03399T0/1-960 EVHTASRDDR STWIRVIQQS VRVCPSREDF PLIETEDEAY LRRIKMELQQ BACU003952/1-1087 EVHTASRDDR STWIRVIQQS VRVCPSREDF PLIETEDEAY LRRIKMELQQ 701 750 ENSP00000354837/1-986 KDRALVELLR EKVGLFAEMT HFQAEEDGGS GMALPTLPRG LFRSESLESP ENSTTRP00000012656/1-987 KDRALVELLQ EKVGLFAEMT HFQVEEDGGS GMPLPTLPRG LFRSESLESP ENSBTAP00000033820/1-987 KDRALVELLQ EKVGLFAEMT HFQVEEDGSS GVPLPTLPRG LFRSESLESP bmy_03399T0/1-960 KDRALVELLQ EKVGLFAEMT HFQVEEDGGS GMPLPTLPRG LFRSESLESP BACU003952/1-1087 KDRALVELLQ EKVGLFAEMT HFQVEEDGGS GMPLPTLPRG LFRSESLESP 751 800 ENSP00000354837/1-986 RGERLLQDAI REVEGLKDLL VGPGVELLLT PREPALPLEP DSGGNTSPGV ENSTTRP00000012656/1-987 RGERLLQDAI REVEGLKDLL VGPGVELLLT PREPTLSMEP DSGGNTSPGV ENSBTAP00000033820/1-987 RGERLLQDAI REVEGLKDLL VGPGVELLLT PREPPLPMEP DSGGNTSPGV bmy_03399T0/1-960 RGERLLQDAI REVEGLKDLL VGPGVELLLT PREPALSMEP DSGCNTSPGV BACU003952/1-1087 RGERLLQDAI REVEGLKDLL VGPGVELLLT PREPALSVEP DSGGNTSPGV 801 850 ENSP00000354837/1-986 TANGEARTFN GSIELCRADS DSSQRDRNGN QLRSPQEEAL QRLVNLYGLL ENSTTRP00000012656/1-987 TANGEARTFN GSIELCRADS DSSQKDRNGN QLRSPQEEAL QRLVNLYGLL ENSBTAP00000033820/1-987 TANGEARTFN GSIELCRADS DSSQKDRNGN QLRSPQEEAL QRLVNLYGLL bmy_03399T0/1-960 TANGEARTFN GSIELCRADS DSSQKDRNGN QLRSPQEEAL QRLVNLYGLL BACU003952/1-1087 TANGEARTFN GSIELCRADS DSSQKDRNGN QLRSPQEEAL QRLVNLYGLL 851 900 ENSP00000354837/1-986 HGLQAAVAQQ DTLMEARFPE GPERREKLCR ANSRDGEAGR AGAAPVAPEK ENSTTRP00000012656/1-987 HGLQAAVAQQ DTLMEARFPE GPERREKLTR ANSRDGEAGR AGAAPVAPEK ENSBTAP00000033820/1-987 HGLQAAVAQQ DTLMEARFPE GPERREKLTR ANSRDGEAGR AGGVPAVPEK bmy_03399T0/1-960 HGLQAAVAQQ DTLMEARFPE GPERREKLTR ANSRDGEAGR AGAAPVAPEK BACU003952/1-1087 HGLQAAVAQQ DTLMEARFPE GPERREKLTR ANSRDGEAGR AGAAPVAPEK 901 950 ENSP00000354837/1-986 QATELALLQR QHALLQEELR RCRRLGEERA TEAGSLEARL RESEQARALL ENSTTRP00000012656/1-987 QATELALLQR QHTLLQEELR RCRRLGEERA TEAGSLEARL RESEQARALL ENSBTAP00000033820/1-987 QATELALLQR QHALLQEELR RCRRLGEERA TEAGSLEARL RESEQARALL bmy_03399T0/1-960 QATELALLQR QHTLLQEELR RCRRLGEERA TEAGSLEARL RESEQARALL BACU003952/1-1087 QATELALLQR QHTLLQEELR RCRRLGEERA TEAGSLEARL RESEQARALL 951 1000 ENSP00000354837/1-986 EREAEEARRQ LAALGQTE-P LPAEAPWARR PVDPRRRSLP AGDALYLSFN ENSTTRP00000012656/1-987 EREAEEARRQ LAALGHTE-P LPAEAPWARR PLDPRRRSLP AGDALYLSFT ENSBTAP00000033820/1-987 EREAEEARRQ LAALGHTEPP LVAEAPWARR PLDPRRRSLP AGDALYLSFT bmy_03399T0/1-960 EREAEEARRQ LAALGHTD-P LPAEAPWXRR PLDPRRRSLP AGDALYLSFT BACU003952/1-1087 EREAEEARRQ LAALGHTE-P LPAEAPWARR PLDPRRRSLP AGDALYLSFT 1001 1050 ENSP00000354837/1-986 PPQPSRGTDR LDLPVTTRSV HRNFEDRERQ ELGSPEERLQ DSSDPDTGSE ENSTTRP00000012656/1-987 PPQPSRGHDR LDLPVTIRSV HRPFEDRERQ ELGSPDERLQ DSSDPDTGSE ENSBTAP00000033820/1-987 PPQPSRGHDR LDLPVTIRSV HRPFEDRERQ ELGSPDERLQ DSSDPDTGSE bmy_03399T0/1-960 PPQPSRGHDR LDLPVTIRSV HRPFEDRERQ ELGSPDERLQ DSSDPDTGSE BACU003952/1-1087 PPQPSRGHDR LDLPVTIRSV HRPFEDRERQ ELGSPDERLQ DSSDPDTGSE 1051 1100 ENSP00000354837/1-986 EEGSSRLSPP HSPRDFTRMQ DIPEETESRD GEAVASES ENSTTRP00000012656/1-987 EEGSSRLSPP HSPRDFTRMQ DIPEETESRD GEPVASES ENSBTAP00000033820/1-987 EEGSSRLSPP HSPRDFTRMQ DIPEETESRD GEPVASES bmy_03399T0/1-960 EEGSXRLSPP HSPRDFTRMQ DIPEETESRD GEPVASES BACU003952/1-1087 EEGSSRLSPP HSPRDFTRMQ DIPEETESRD GEPVASES