KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:42:02 2014 Check: 00 .. Name: bmy_14302T0/1-656 Len: 951 Check: 2373 Weight: 1.00 Name: ENSTTRP00000004108/1-792 Len: 951 Check: 8577 Weight: 1.00 Name: ENSP00000268704/1-795 Len: 951 Check: 5869 Weight: 1.00 Name: ENSBTAP00000032431/1-779 Len: 951 Check: 1227 Weight: 1.00 Name: BACU004273/1-919 Len: 951 Check: 7305 Weight: 1.00 // 1 50 bmy_14302T0/1-656 MAAACLLLRA LRLGPGPGPG PGRLRGPYSG WSPGSSAKTG WRWPYVVHRP ENSTTRP00000004108/1-792 MAAACLLLRA LRLG--PGPG PGRLRGPYSG WSPGSSAKTG WRWPYVVHRP ENSP00000268704/1-795 MAVLLLLLRA LRRG--PGPG PRPLWGPGPA WSPGFPARPG RGRPYMASRP ENSBTAP00000032431/1-779 MAAAWLLLRA LRPG--PGPG PGRLRCPYSG WSPGCTSGAK WRWPNDVHRP BACU004273/1-919 MAAAFLLLRA LRLG--PGPG PGRLRGPYSG WSPGSSAKTG WRWPYVVHRP 51 100 bmy_14302T0/1-656 LMGVVGPGGR VLQSFQLRLL TPTFEGISRL LVKQHLVQNP VGLWKLLGVY ENSTTRP00000004108/1-792 LMGVVGPGGR VLQSFQLRLL TPTFEGISRL LVKQHLVQNP VGLWKLLXXX ENSP00000268704/1-795 PGDLAEAGGR ALQSLQLRLL TPTFEGINGL LLKQHLVQNP VRLWQLLGGT ENSBTAP00000032431/1-779 PMGPIGPGGR ALQSFQLRLL TPTFEGISRL LVKQHIVQNP VGLWKLLGGT BACU004273/1-919 LMGVVGPGGR VLQSFQWQLL TPTFEGISRW LVKQHLVQNP VGLWKLLGGT 101 150 bmy_14302T0/1-656 LL-------- KTEVTGRAYG ISLPLSTHC- ---------- ---------- ENSTTRP00000004108/1-792 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XRR------- ERE---VQYR ENSP00000268704/1-795 FYFNTSRLKQ KNKEKDKSKG KAPEEDEEER RRR------- ERDD--QMYR ENSBTAP00000032431/1-779 YYFNTSRRKQ KTKDNDKAKG RSPEDDEEER RRR------- ERED--QMYR BACU004273/1-919 YYFNTSRWKQ KTKGSDKAKG RSPEDDEEYL KAGGVAVLCV ERVDLGSALD 151 200 bmy_14302T0/1-656 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004108/1-792 ERLRTLFVIA VFMSL----- LNALGS---- ---------- ---------- ENSP00000268704/1-795 ERLRTLLVIA VVMSL----- LNALST---- ---------- ---------- ENSBTAP00000032431/1-779 ERLRTLFVIA VIMSL----- LNALGS---- ---------- ---------- BACU004273/1-919 SELWPILCLT FVSSLTVSRC LSWSGPHDSI PDQYYGCLAK ATWSVRKDGP 201 250 bmy_14302T0/1-656 --------GW G--------- -----TVLCP QGQRSGLFIT RGPSAFCPQR ENSTTRP00000004108/1-792 ---SGGSISW SDFVHEMLAK GEVQ-VQVVP ESDVVEVYLH PGAVVFGRPR ENSP00000268704/1-795 ---SGGSISW NDFVHEMLAK GEVQRVQVVP ESDVVEVYLH PGAVVFGRPR ENSBTAP00000032431/1-779 ---SGGNISW NDFVHEMLAK GEVQRVQVVP ESDVVEVYLH PGAVVFGRPR BACU004273/1-919 TLHSGGNISW SDFVHEMLAK GEVQRVQVVP ESDVVEVYLH PGAVVFGRPR 251 300 bmy_14302T0/1-656 LALMYRMQVA NIDKFEEKLR AAEDELNIEG KDRIPVSYKR TGFFGNALYA ENSTTRP00000004108/1-792 LALMYRMQVA NIDKFEEKLR AAEDELNIEG KDRIPVSYKR TGFFGNALYA ENSP00000268704/1-795 LALMYRMQVA NIDKFEEKLR AAEDELNIEA KDRIPVSYKR TGFFGNALYS ENSBTAP00000032431/1-779 LALMYRMQVA NIDKFEEKLR AAEDELNIEG KDRIPVSYKR TGFFGNALYA BACU004273/1-919 LALMYRMQVA NIDKFEEKLR AAEDELNIEG KDRIPVSYKR TGFFGNALYA 301 350 bmy_14302T0/1-656 LGMTAVGLAI LWYVFRLAGM TGREGGFSAF NQLKMARFTI VDGKTGKGVS ENSTTRP00000004108/1-792 LGMTAVGLAI LWYVFRLAGM TGREGGFSAF NQLKMARFTI VDGKTGKGVS ENSP00000268704/1-795 VGMTAVGLAI LWYVFRLAGM TGREGGFSAF NQLKMARFTI VDGKMGKGVS ENSBTAP00000032431/1-779 LGMTAVGLAI LWYVFRLAGM TGREGGFSAF NQLKMARFTI VDGKMGKGVS BACU004273/1-919 LGMTAVGLAI LWYVFRLAGM TGREGGFSAF ---------- ---------- 351 400 bmy_14302T0/1-656 FKDVAGMHEA KLEVKEFVDY LKSPERFLQL GAKVPKGALL LGPPGCGKTL ENSTTRP00000004108/1-792 FKDVAGMHEA KLEVKEFVDY LKSPERFLQL GAKVPKGALL LGPPGCGKTL ENSP00000268704/1-795 FKDVAGMHEA KLEVREFVDY LKSPERFLQL GAKVPKGALL LGPPGCGKTL ENSBTAP00000032431/1-779 FKDVAGMHEA KLEVKEFVDY LKSPERFLQL GAKVPKGALL LGPPGCGKTL BACU004273/1-919 ---------A KLEVKEFVDY LKSPERFLQL GAKVPKGALL LGPPGCGKTL 401 450 bmy_14302T0/1-656 LAKAVATEAQ VPFLAMAGSE FVEVIGGLGA ARVRSLFKEA RARAPCIVYI ENSTTRP00000004108/1-792 LAKAVATEAQ VPFLAMAGPE FVEVIGGLGA ARVRSLFKEA RARAPCIVYI ENSP00000268704/1-795 LAKAVATEAQ VPFLAMAGPE FVEVIGGLGA ARVRSLFKEA RARAPCIVYI ENSBTAP00000032431/1-779 LAKAVATEAQ VPFLAMAGPE FVEVIGGLGA ARVRSLFKEA RARAPCIVYI BACU004273/1-919 LAKAVATEAQ VPFLAMAGSE FVEVIGGLGA ARVRSLFKEA RARAPCIVYI 451 500 bmy_14302T0/1-656 DEIDAVGKRR STTVSGFSNT EEEQTLNQLL VEMDGMGTTD HVIVLAATNR ENSTTRP00000004108/1-792 DEIDAVGKRR STTVSGFSNT EEEQTLNQLL VEMDGMGTTD HVIVLAATNR ENSP00000268704/1-795 DEIDAVGKKR STTMSGFSNT EEEQTLNQLL VEMDGMGTTD HVIVLASTNR ENSBTAP00000032431/1-779 DEIDAVGKKR STAVSGFSNT EEEQTLNQLL VEMDGMGTTD HVIVLAATNR BACU004273/1-919 DEIDAVGKRR STTVSGFSNT EEEQTLNQLL VEMDGMGTTD HVIVLAATNR 501 550 bmy_14302T0/1-656 ADILDNALLR PGRLDRHVFI DLPTLQ---- ---------- ---------- ENSTTRP00000004108/1-792 ADILDNALLR PGRLDRHVFI DLPTLQERRE IFEQHLRSLK LTRASSFYSQ ENSP00000268704/1-795 ADILDGALMR PGRLDRHVFI DLPTLQERRE IFEQHLKSLK LTQSSTFYSQ ENSBTAP00000032431/1-779 ADILDNALLR PGRLDRHVFI DLPTLQERKE IFEQHLKSLK LTRASSFYSQ BACU004273/1-919 ADILDNALLR PGRLDRHVFI DLPTLQERRE IFEQHLESLK LTRASSFYSQ 551 600 bmy_14302T0/1-656 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004108/1-792 RLAELTPGFS GADIANICNE AALHAAREGH TAVHTSNLDY AVERVFAXXX ENSP00000268704/1-795 RLAELTPGFS GADIANICNE AALHAAREGH TSVHTLNFEY AVERVLAGTA ENSBTAP00000032431/1-779 RLAELTPGFS GADIANICNE AALHAAREGH TAVHTSNLDY AVERVVAGTA BACU004273/1-919 RLAELTPGFS GADIANICNE AALHAAREGH TAVHTSSLDY AVERVLAGAA 601 650 bmy_14302T0/1-656 ---------- ---------- ---------- ------VSIA PRTNAALGFT ENSTTRP00000004108/1-792 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVSIT PRTNAALGFT ENSP00000268704/1-795 KKSKILSKEE QKVVAFHESG HALVGWMLEH TEAVMKVSIT PRTNAALGFA ENSBTAP00000032431/1-779 KKSKVLSKEE QKVVAFHESG HALVGWLLEH TEAVMKVSIT PRTNAALGFA BACU004273/1-919 KKSQVLSKEE QKVVALHESG HALVGWLLEH TEAVGKVSIA PRTNAALGFT 651 700 bmy_14302T0/1-656 QILPRDQHLF TREQLFERMC MALGGRASES ISFNRVTSGA QDDLRKVTRI ENSTTRP00000004108/1-792 QILPRDQHLF TREQLFERMC MALGGRASES ISFNRVTSAA QDDLRKVTRI ENSP00000268704/1-795 QMLPRDQHLF TKEQLFERMC MALGGRASEA LSFNEVTSGA QDDLRKVTRI ENSBTAP00000032431/1-779 QMLPRDQHLF TREQLFERMC MALGGRASES ISFNRVTSGA QDDLRKVTRI BACU004273/1-919 QILPRDQHLF TREQLFERMC MALGGRASES ISFNRVTSGA QDDLRKVTRI 701 750 bmy_14302T0/1-656 AYSMVKQFGM APSIGPISFP EAQDGVPGIG RRPFSQGLQQ MMDHEARLLV ENSTTRP00000004108/1-792 AYSMVKQFGM APSIGPISFP EAQDGIPGIG RRPFSQGLQQ MMDHEARLLV ENSP00000268704/1-795 AYSMVKQFGM APGIGPISFP EAQEGLMGIG RRPFSQGLQQ MMDHEARLLV ENSBTAP00000032431/1-779 AYSMVKQFGM APSIGPVSFP EAQEGVTGIG RRPFSQGLQQ MIDHEARLLV BACU004273/1-919 AYSMVKQFGM APSIGPISFP EAQDGVPGIG RRPFSQGLQQ MMDHEARLLV 751 800 bmy_14302T0/1-656 AAAYRHTEKV LRDNLDKLQA LANALLEKEV INYEDIEALI GP-PPHGPKK ENSTTRP00000004108/1-792 AAAYRHTEKV LRDNLDKLQA LSNDLLEKEV RSSEDIEALI RPAPPHGPKK ENSP00000268704/1-795 AKAYRHTEKV LQDNLDKLQA LANALLEKEV INYEDIEALI GP-PPHGPKK ENSBTAP00000032431/1-779 ATAYRHTEQV LRDNLDKLHA LASALLEKEV INYEDIEALI GP-PPHGPKK BACU004273/1-919 AAAYRHTEKV LRDNLDKLQA LANALLEKEV INYEDIEALI GP-PPHGPKK 801 850 bmy_14302T0/1-656 RIAPQRWSDA QREKAEAEEA EAGE-AEAEA AGS------- ---------- ENSTTRP00000004108/1-792 RIAPQRWSDA P-------EG RSGEGAEAEA GGQ------- ---------- ENSP00000268704/1-795 MIAPQRWIDA QREKQDLGEE ETEETQQPPL GGE------- ---------- ENSBTAP00000032431/1-779 KIAPQKWSDA QREKQDSGEE EGA------- ---------- ---------- BACU004273/1-919 RIAPQRWSDA QREKPEAGEA EAVAGIHKKV ARTIGISVDP RRRNKCTESL 851 900 bmy_14302T0/1-656 ---------- ---------S PCRGRSRPGP GSWTTLLAAG AGPSSQPSLV ENSTTRP00000004108/1-792 ---------- ---------P RCRGRKQ--- -SWA------ ---------- ENSP00000268704/1-795 ---------- ---------E PTWPK----- ---------- ---------- ENSBTAP00000032431/1-779 ---------- ---------- ---------- ---------- ---------- BACU004273/1-919 QANVQRLKEY RSKLILFPRK PSAPKKGDSS AEELKLATQL TGPVMPIRNV 901 950 bmy_14302T0/1-656 SAQGP----- ---------- ---------- ---------- ---------- ENSTTRP00000004108/1-792 ---------- ---------- ---------- ---------- ---------- ENSP00000268704/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000032431/1-779 ---------- ---------- ---------- ---------- ---------- BACU004273/1-919 YKKEKARVIT EEEKNFKAFA SLRMARANAR LFGIRAKRAK EAAEQDVEKK 951 1000 bmy_14302T0/1-656 - ENSTTRP00000004108/1-792 - ENSP00000268704/1-795 - ENSBTAP00000032431/1-779 - BACU004273/1-919 K