KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:41:06 2014 Check: 00 .. Name: BACU015673/1-666 Len: 767 Check: 3058 Weight: 1.00 Name: ENSP00000296088/1-765 Len: 767 Check: 8968 Weight: 1.00 Name: ENSBTAP00000030935/1-694 Len: 767 Check: 8528 Weight: 1.00 Name: bmy_03315T0/1-767 Len: 767 Check: 4712 Weight: 1.00 Name: ENSTTRP00000012540/1-767 Len: 767 Check: 4534 Weight: 1.00 // 1 50 BACU015673/1-666 MAGFKRGYDG KIAGLYDLDK TLGRGHFAVV KLARHVFTGE KVAVKVIDKT ENSP00000296088/1-765 MAGFKRGYDG KIAGLYDLDK TLGRGHFAVV KLARHVFTGE KVAVKVIDKT ENSBTAP00000030935/1-694 MAGFKRGYDG KIAGLYDLDK TLGRGHFAVV KLARHVFTGE KVAVKVIDKT bmy_03315T0/1-767 MAGFKRGYDG KIAGLYDLDK TLGRGHFAVV KLARHVFTGE KVAVKVIDKT ENSTTRP00000012540/1-767 MAGFKRGYDG KIAGLYDLDK TLGRGHFAVV KLARHVFTGE KVAVKVIDKT 51 100 BACU015673/1-666 KLDTLATGHL FQEVRCMKLV QHPNIVRLYE VIDTQTKLYL ILELGDGGDM ENSP00000296088/1-765 KLDTLATGHL FQEVRCMKLV QHPNIVRLYE VIDTQTKLYL ILELGDGGDM ENSBTAP00000030935/1-694 KLDTLATGHL FQEVRCMKLV QHPNIVRLYE VIDTQTKLYL ILELGDGGDM bmy_03315T0/1-767 KLDTLATGHL FQEVRCMKLV QHPNIVRLYE VIDTQTKLYL ILELGDGGDM ENSTTRP00000012540/1-767 KLDSLATGHL FQEVRCMKLV QHPNIVRLYE VIDTQTKLYL ILELGDGGDM 101 150 BACU015673/1-666 FDYIMKHEEG LNEDLAKKYF AQIVHAISYC HKLHVVHRDL KPENVVFFEK ENSP00000296088/1-765 FDYIMKHEEG LNEDLAKKYF AQIVHAISYC HKLHVVHRDL KPENVVFFEK ENSBTAP00000030935/1-694 FDYIMKHEEG LNEDLAKKYF AQIVHAISYC HKLHVVHRDL KPENVVFFEK bmy_03315T0/1-767 FDYIMKHEEG LNEDLAKKYF AQIVHAISYC HKLHVVHRDL KPENVVFFEK ENSTTRP00000012540/1-767 FDYIMKHEEG LNEDLAKKYF AQIVHAISYC HKLHVVHRDL KPENVVFFEK 151 200 BACU015673/1-666 QGLVKLTDFG FSNKFQPGKK LTTSCGSLAY SAPEILLGDE YDAPAVDIWS ENSP00000296088/1-765 QGLVKLTDFG FSNKFQPGKK LTTSCGSLAY SAPEILLGDE YDAPAVDIWS ENSBTAP00000030935/1-694 QGLVKLTDFG FSNKFQPGKK LTTSCGSLAY SAPEILLGDE YDAPAVDIWS bmy_03315T0/1-767 QGLVKLTDFG FSNKFQPGKK LTTSCGSLAY SAPEILLGDE YDAPAVDIWS ENSTTRP00000012540/1-767 QGLVKLTDFG FSNKFQPGKK LTTSCGSLAY SAPEILLGDE YDAPAVDIWS 201 250 BACU015673/1-666 LGVILFMLVC GQPPFQEAND SETLTMIMDC KYTVPSHVSK GCKDLITRML ENSP00000296088/1-765 LGVILFMLVC GQPPFQEAND SETLTMIMDC KYTVPSHVSK ECKDLITRML ENSBTAP00000030935/1-694 LGVILFMLVC GQPPFQEAND SETLTMIMDC KYTVPSHVSK ECKDLITRML bmy_03315T0/1-767 LGVILFMLVC GQPPFQEAND SETLTMIMDC KYTVPSHVSK GCKDLITRML ENSTTRP00000012540/1-767 LGVILFMLVC GQPPFQEAND SETLTMIMDC KYTVPSHVSK GCKDLITRML 251 300 BACU015673/1-666 QRDPKRRASL EEIENHPWLQ GVDPSPATKY NIPLVSYKNL SEEEHNSIIQ ENSP00000296088/1-765 QRDPKRRASL EEIENHPWLQ GVDPSPATKY NIPLVSYKNL SEEEHNSIIQ ENSBTAP00000030935/1-694 QRDPKRRASL EEIENHPWLQ GVDPSPATKY NIPLVSYKNL SEEEHNSIIQ bmy_03315T0/1-767 QRDPKRRASL EEIENHPWLQ GVDPSPATKY NIPLVSYKNL SEEEHNSIIQ ENSTTRP00000012540/1-767 QRDPKRRASL EEIENHPWLQ GVDPSPATKY NIPLVSYKNL SEEEHNSIIQ 301 350 BACU015673/1-666 RMVLGDIADR DAIVEALETN RYNHITATYF LLAERILREK QEKEIQTRSA ENSP00000296088/1-765 RMVLGDIADR DAIVEALETN RYNHITATYF LLAERILREK QEKEIQTRSA ENSBTAP00000030935/1-694 RMVLGDIADR DAIVEALETN RYNHITATYF LLAERILREK QEKEIQTRSA bmy_03315T0/1-767 RMVLGDIADR DAIVEALETN RYNHITATYF LLAERILREK QEKEIQTRSA ENSTTRP00000012540/1-767 RMVLGDIADR DAIVEALETN RYNHITATYF LLAERILREK QEKEIQTRSA 351 400 BACU015673/1-666 SPSNIKAQFR QSWPTKIDVP QDLEDDLTAT PLSHATVPQS PARAADSVLN ENSP00000296088/1-765 SPSNIKAQFR QSWPTKIDVP QDLEDDLTAT PLSHATVPQS PARAADSVLN ENSBTAP00000030935/1-694 SPSNIKAQFR QSWPTKIDVP QDLEDDLTAT PLSHATVPQS PARATDSVLN bmy_03315T0/1-767 SPSNIKAQFR QSWPTKIDVP QDLEDDLTAT PLSHATVPQS PARAADSVLN ENSTTRP00000012540/1-767 SPSNIKAQFR QSWPTKIDVP QDLEDDLTAT PLSHATVPQS PARAADSVLN 401 450 BACU015673/1-666 GHRSKGLCDS AKKDDLPELA GPALSTGPPA SLKPAASGRK CLFRVEEDEE ENSP00000296088/1-765 GHRSKGLCDS AKKDDLPELA GPALSTVPPA SLKPTASGRK CLFRVEEDEE ENSBTAP00000030935/1-694 GHRSKGLCDS AKKEDLPELA GPALSSGPQA GLKPAASGRK CLFRVEEDEE bmy_03315T0/1-767 GHRSKGLCDS AKKDELPELA GPALSTGPPA SLKPAASGRK CLFRVEEDEE ENSTTRP00000012540/1-767 GHRSKGLCDS AKKDDLPELA GPALSTGPPA GLKPAASGRK CLFRVEEDEE 451 500 BACU015673/1-666 EDEEDKKPMS LSTQVVLRRK PSVTNRLTSR KSAPVLNQIF EEGESDDEFD ENSP00000296088/1-765 EDEEDKKPMS LSTQVVLRRK PSVTNRLTSR KSAPVLNQIF EEGESDDEFD ENSBTAP00000030935/1-694 EDEEDKKPMS LSTQVVLRRK PSVTNRLTSR KSAPVLNQIF EEGESDDEFD bmy_03315T0/1-767 EDEEDKKPMS LSTQVVLRRK PSVTNRLTSR KSAPVLNQIF EEGESDDEFD ENSTTRP00000012540/1-767 EDEEDKKPMS LSTQVVLRRK PSVTNRLTSR KSAPVLNQIF EEGESDDEFD 501 550 BACU015673/1-666 MDENLPPKLS RLKMNIASPG TVHKRYHRRK SQGRGSSCSS SETSDDDSES ENSP00000296088/1-765 MDENLPPKLS RLKMNIASPG TVHKRYHRRK SQGRGSSCSS SETSDDDSES ENSBTAP00000030935/1-694 MDENLPPKLS RLKMNIASPG TVHKRYHRRK SQGRGSSCSS SETSDDDSES bmy_03315T0/1-767 MDENLPPKLS RLKMNIASPG TVHKRYHRRK SQGRGSSCSS SETSDDDSES ENSTTRP00000012540/1-767 MDENLPRKLS RLKMNIASPG TVHKRYHRRK SQGRGSSCSS SETSDDDSES 551 600 BACU015673/1-666 RRRLDKDGGF TYSWHRRDSS EGPPGSEGDG GXXXXXXXXX XXXX------ ENSP00000296088/1-765 RRRLDKDSGF TYSWHRRDSS EGPPGSEGDG GGQSKPSNAS GGVDKASPSE ENSBTAP00000030935/1-694 RRRLDKDSGF TYSWHRRDSS EGPPGSEGDG GGQSKPSRGG GGADKASPSE bmy_03315T0/1-767 RRRLDKDSGF TYSWHRRDSS EGPPGSEGDG GGQSKPSRGG GGADKASPSE ENSTTRP00000012540/1-767 RRRLDKDSGF TYSWHRRDSS EGPPGSEGDG GGQSKPSRGG GGADKASPSE 601 650 BACU015673/1-666 ---------- ---------- ---------- -XXXXXXXXX XXXXXXXXXX ENSP00000296088/1-765 NNAGGGSPSS GSGGNPTNTS GTTRRCAGP- -SNSMQLASR SAGELVESLK ENSBTAP00000030935/1-694 HSAGGGGPTG GSGGAPGGTS GSARRCAGPG SSTSTQLAAR GAGELVESLK bmy_03315T0/1-767 HSAGGGGPAG GSGGAPGGTS GSARRCAGPG SSTSTQLAAR GAGELVESLK ENSTTRP00000012540/1-767 HSAGGGGPAG GSGGAPGGTS GSARRCAGPG SSTSTQLAAR GAGELVESLK 651 700 BACU015673/1-666 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGPAPPH ENSP00000296088/1-765 LMSLCLGSQL HGSTKYIIDP QNGLSFSSVK VQEKSTWKMC ISSTGNAGQV ENSBTAP00000030935/1-694 LMGLCLGSQL HGSAKYILDP QSGLSFSSVK VQEKSAWKMC IGST------ bmy_03315T0/1-767 LMGLCLGSQL HGSAKYIIDP QSSLSFSSVK VQEKSAWKMC IGSAGGAAPA ENSTTRP00000012540/1-767 LMGLCLGSQL HGSAKYIIDP QGSLSFSSVK VQEKSAWKMC IGSAGGAAPA 701 750 BACU015673/1-666 PRS------- ---------- ---------- ---------- ---------- ENSP00000296088/1-765 PAVGGIKFFS DHMADTTTEL ERIKSKNLKN NVLQLPLCEK TISVNIQRNP ENSBTAP00000030935/1-694 ---------- ---------- ---------- ---------- ---------- bmy_03315T0/1-767 PAVGGMKFFS DHVANTTAEL DRIKSKNLKN NVLQLPLCEK TISVNIQRNP ENSTTRP00000012540/1-767 PAVGGMKFFS DHVANTTVEL DRIKSKNLKN NVLQLPLCEK TISVNIQRNP 751 800 BACU015673/1-666 ---------- ------- ENSP00000296088/1-765 KEGLLCASSP ASCCHVI ENSBTAP00000030935/1-694 ---------- ------- bmy_03315T0/1-767 KEGLLCASSQ ASCCHVI ENSTTRP00000012540/1-767 KEGLLCASSQ ASCCHVI