KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:54 2014 Check: 00 .. Name: ENSP00000273261/1-1093 Len: 1139 Check: 416 Weight: 1.00 Name: ENSBTAP00000030722/1-1090 Len: 1139 Check: 8219 Weight: 1.00 Name: ENSTTRP00000001829/1-1023 Len: 1139 Check: 404 Weight: 1.00 Name: bmy_10593T0/1-982 Len: 1139 Check: 4744 Weight: 1.00 Name: BACU015106/1-969 Len: 1139 Check: 4723 Weight: 1.00 // 1 50 ENSP00000273261/1-1093 MARPVRGGLG APRRSPCLLL LWLLLL-RLE PVTAAAGPRA PCAAACTCAG ENSBTAP00000030722/1-1090 MARPVRGALG APRRSPCLLL LWLLLLLQLE PASATAGPRA PCAAACTCAG ENSTTRP00000001829/1-1023 ASREWMXXXX XXXXXXX--- -------XXX XXXXXXXXXX ---------- bmy_10593T0/1-982 -MDFWVQGLG ERGRKQR--- -------RRR EAPELLGKRA L--------- BACU015106/1-969 MN-------- ---------- ---------- ---------- ---------- 51 100 ENSP00000273261/1-1093 DSLDCGGRGL AALPGDLPSW TRSLNLSYNK LSEIDPAGFE DLPNLQEVYL ENSBTAP00000030722/1-1090 DYLDCGGRGL AALPGDLPAW TRSLNLSYNK LSEIDPAGFE DLPNLQEVYL ENSTTRP00000001829/1-1023 ---------- ---------- ---------- ---------- --------YL bmy_10593T0/1-982 -FMPVGNDLV KCLFKRDATW Q--------- ---------- ---------- BACU015106/1-969 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000273261/1-1093 NNNELTAVPS LGAASSHVVS LFLQHNKIRS VEGSQLKAYL SLEVLDLSLN ENSBTAP00000030722/1-1090 NNNELTAIPS LGSASSHIVS LFLQHNRIRS VEGRQLKAYL SLHVLDLSAN ENSTTRP00000001829/1-1023 NNNELTAIPS LGAASSRILS LFLQHNRIRS -ERSQLKAYV SLEVLXXXXX bmy_10593T0/1-982 ---------- ---------- ----HNRIRS VEGGQLKAYV SLEVLDLSSN BACU015106/1-969 ---------- ---------- ----HSS--- ---------- ---------- 151 200 ENSP00000273261/1-1093 NITEVRNTCF PHGPPIKELN LAGNRIGTLE LGAFDGLSRS LLTLRLSKNR ENSBTAP00000030722/1-1090 NITEIRSTCF PHGLPLTELN LASNRISTLE SGAFDGLSRS LLTLRLSKNR ENSTTRP00000001829/1-1023 XXXXXXXXXX XXXXXXXXXN LASNRIGTLE SGAFDGLSRS LLTLRLSKNR bmy_10593T0/1-982 NITEIRSTCF PHGLPIKELN LASNRLSSLE SGAFDGLSRS LLTLRLSKNR BACU015106/1-969 ---------- ---------N LASNRLSSLE SGAFDGLSRS LLTLRLSKNR 201 250 ENSP00000273261/1-1093 ITQLPVRAFK LPRLTQLDLN RNRIRLIEGL TFQGLNSLEV LKLQRNNISK ENSBTAP00000030722/1-1090 ITQLPVKAFK LPRLTQLDLN RNRIRLIEGL TFQGLDSLEV LRLQRNNISK ENSTTRP00000001829/1-1023 ITQLPVKAFK LPRLTQLDLN RNRIRLIEGL TFQGLDSLEV LRLQRNNISR bmy_10593T0/1-982 ITQLPVKAFK LPRLTQLDLN RNRIRLIEGL TFQGLDSLEV LRLQRNNISK BACU015106/1-969 ITQLPVKAFK LPRLTQLDLN RNRIRLIEGL TFQGLDSLEV LRLQRNNISK 251 300 ENSP00000273261/1-1093 LTDGAFWGLS KMHVLHLEYN SLVEVNSGSL YGLTALHQLH LSNNSIARIH ENSBTAP00000030722/1-1090 LTDGAFWGLA RMHALHLEYN SLAEVNSGSL YGLTALHQLH LGNNSISRIH ENSTTRP00000001829/1-1023 LTDGAFWGLA RMQALHLEYN SLTEVNSGSL YGLTALHQLH LGNNSISRIH bmy_10593T0/1-982 LTDGAFWGLA RMQALHLEYN SLAEVNSGSL YGLTALHQLH LGNNSISRIH BACU015106/1-969 LTDGAFWGLA RMQALHLEYN SLVEVNSGSL YGLTALHQLH LGNNSISRIH 301 350 ENSP00000273261/1-1093 RKGWSFCQKL HELVLSFNNL TRLDEESLAE LSSLSVLRLS HNSISHIAEG ENSBTAP00000030722/1-1090 RDGWSFCQKL HELILSFNNL TRLDEESLAD LSSLSILRLS HNSISHIAEG ENSTTRP00000001829/1-1023 RDGWSFCQKL HELILSFNNL TRLDEESLAD LSSLSILRLG HNSISHIAEG bmy_10593T0/1-982 RDGWSFCQKL HELILSFNNL TRLDEESLAD LSSLSILRLS HNSISHIAEG BACU015106/1-969 RDGWSFCQKL HELILSFNNL TRLDEESLAD LSSLSILRLS HNSISHIAEG 351 400 ENSP00000273261/1-1093 AFKGLRSLRV LDLDHNEISG TIEDTSGAFS GLDSLSKL-- ---------- ENSBTAP00000030722/1-1090 AFRGLKSLRV LDLDHNEISG TIEDTSGAFT GLDSLSKL-- ---------- ENSTTRP00000001829/1-1023 AFRGLKSLRV LDLDHNEISG TIEDTSGAFT GLDSLSKL-- ---------- bmy_10593T0/1-982 AFRGLKSLRV LDLDHNEISG TIEDTSGAFT GLDSLSKL-- ---------- BACU015106/1-969 AFRGLKSLRV LDLDHNEISG TIEDTSGAFT GLDSLSKLEG CVLAVFPCGS 401 450 ENSP00000273261/1-1093 ---------- ---------- -TLFGNKIKS VAKRAFSGLE GLEHLNLGGN ENSBTAP00000030722/1-1090 ---------- ---------- -TLFGNKIKS VAKRAFSGLE GLEHLNLGEN ENSTTRP00000001829/1-1023 ---------- ---------- -TLSGNKIKS VAKRAFSGLE GLEHLNLGEN bmy_10593T0/1-982 ---------- ---------- -TLSGNKIKS VAKRAFSGLE GLEHLNLGEN BACU015106/1-969 HLNEGLKTDL VFSRDLSPDS RTLSGNKIKS VAKRAFSGLE GLEHLNLGEN 451 500 ENSP00000273261/1-1093 AIRSVQFDAF VKMKNLKELH ISSDSFLCDC QLKWLPPWLI GRMLQAFVTA ENSBTAP00000030722/1-1090 AIRSVQFDAF VKMKNLKELH ISSDSFLCDC QLKWLPPWLL GRTLQSFVTA ENSTTRP00000001829/1-1023 AIRSVQFDAF VKMKNLKELH ISSDSFLCDC QLKWLPPWLL SRTLQGFVTA bmy_10593T0/1-982 AIRSVQFDAF VKMKNLKELH ISSDSFLCDC QLKWLPPWLL GRMLQGFVTA BACU015106/1-969 AIRSVQFDAF VKMKNLKELH ISSDSFLCDC QLKWLPPWLL GRTLQGFVTA 501 550 ENSP00000273261/1-1093 TCAHPESLKG QSIFSVPPES FVCDDFLKPQ IITQPETTMA MVGKDIRFTC ENSBTAP00000030722/1-1090 TCAHPEALKG QSIFSVPPES FVCDDLPKPQ IITQPETITA VVGKDVRFTC ENSTTRP00000001829/1-1023 TCAHPESLKG QSIFAVPPES FVCDDVPKPQ IITQPETTTA VVGKDVRFTC bmy_10593T0/1-982 TCAHPESLKG QSIFAVPPES FVCDDVPKPQ IITQPETTTA VVGKDVRFTC BACU015106/1-969 TCAHPESLKG RSIFAVPPEG FVCDDVPKPQ IITQPETTTA VVGKDVRFTC 551 600 ENSP00000273261/1-1093 SAASSSSSPM TFAWKKDNEV LTNADMENFV HVHAQDGEVM EYTTILHLRQ ENSBTAP00000030722/1-1090 SAASSSSSPM TFAWKKDNEA LANADMENFA HVRAQDGEVM EYTTVLHLRR ENSTTRP00000001829/1-1023 SAASSSSSPM TFAWKKDNEV LANADMENFA HVRAQDGEVM EYTTILHLRR bmy_10593T0/1-982 SAASSSSSPM TFAWKKDNEG LANADMENFA HVRAQDGEVM EYTTILHLRR BACU015106/1-969 SAASSSSSPM TFAWKKDNEG LANADMENFA HVRAQDGEVM EYTTILHLRR 601 650 ENSP00000273261/1-1093 VTFGHEGRYQ CVITNHFGST YSHKARLTVN VLPSFTKTPH DITIRTTTMA ENSBTAP00000030722/1-1090 LSFEHEGRYQ CVITNHFGSS YSHKAKLTVH VFPSFTKMPH DIAIRTGTTA ENSTTRP00000001829/1-1023 VTFGHEGRYQ CVITNHFGST YSHKARLTVN VLPSFTKMPH DIAIRTGTMA bmy_10593T0/1-982 VTFGHEGRYQ CVITNHFGST YSHKARLTVN VLPSFTKMPH DIAIRTGTMA BACU015106/1-969 VTFGHEGRYQ CVITNHFGST YSHKARLTVN VLPSFTKMPH DIAIRTGTMA 651 700 ENSP00000273261/1-1093 RLECAATGHP NPQIAWQKDG GTDFPAARER RMHVMPDDDV FFITDVKIDD ENSBTAP00000030722/1-1090 RLECAATGHP NPQIAWQKDG GTDFPAARER RMHVMPDDDV FFITDVKIGD ENSTTRP00000001829/1-1023 RLECAATGHP NPQIAWQKDG GTDFPAARER RMHVMPDDDV FFITDVKIDD bmy_10593T0/1-982 RLECAATGHP NPQIAWQKDG GTDFPAA--- ---------- ---------- BACU015106/1-969 RLECAATGHP NPQIAWQKDG GTDFPAARER RMHVMPDDDV FFITDVKIDD 701 750 ENSP00000273261/1-1093 AGVYSCTAQN SAGSISANAT LTVLETPSLV VPLEDRVVSV GETVALQCKA ENSBTAP00000030722/1-1090 MGVYSCTAQN SAGSVSANAT LTVLETPSLA VPLEDRVVSV GETVALQCKA ENSTTRP00000001829/1-1023 MGVYSCTAQN SAGSISANAT LTVLETPSLA VPLEDRVASV GETVALQCKA bmy_10593T0/1-982 ---------- ---------- ----QTPSLA VPLEDRVASV GETVALQCKA BACU015106/1-969 MGIYSCTAQN SAGSISANAT LTVLETPSLA VPLEDRVASV GETVALQCKA 751 800 ENSP00000273261/1-1093 TGNPPPRITW FKGDRPLSLT ERHHLTPDNQ LLVVQNVVAE DAGRYTCEMS ENSBTAP00000030722/1-1090 AGSPPPRITW LKGDRPLSLT ERHHFTPGNQ LLVVQNVVLE DAGRYTCEMS ENSTTRP00000001829/1-1023 TGSPPPRITW LKGDQPLILT ERHHFTPGNQ LLVVQNVVVE DAGRYTCEMS bmy_10593T0/1-982 TGSPPPRITW LKGDRPLILT ERHHFTPGNQ LLVVQNVVAE DAGRYTCEMS BACU015106/1-969 TGSPPPRITW LKGDRPLILT ERHHFTPGNQ LLVVQNVVAE DAGRYTCEMS 801 850 ENSP00000273261/1-1093 NTLGTERAHS QLSVLPAAGC RKDGTTVGIF TIAVVSSIVL TSLVWVCIIY ENSBTAP00000030722/1-1090 NALGTERAHS QLSVLPTPGC RKDGTTVGIF TIAVVCSIVL TSLVWVCIIY ENSTTRP00000001829/1-1023 NALGTERAHS QLSVLPTPGC RKDGTTVGIF TIAVVCSIVL TSLVWVCIIY bmy_10593T0/1-982 NALGTERAHS QLSVLPTPGC RKDGTTVGIF TIAVVCSIVL TSLVWVCIIY BACU015106/1-969 NALGTERAHS QLSVLPTPGC RKDGTTVGIF TIAVVCSIVL TSLVWVCIIY 851 900 ENSP00000273261/1-1093 QTRKKSEEYS VTNTDETVVP PDVPSYLSSQ GTLSDRQETV VRTEGGPQAN ENSBTAP00000030722/1-1090 QTRKKSEEYS VTNTDETIVP PDVPSYLSSQ GTLSDRQETM VRMEGGHQAN ENSTTRP00000001829/1-1023 QTRKKSEEYS VTNTDETIVP PDVPSYLSSQ GTLSDRQETM VRTEGGHQAN bmy_10593T0/1-982 QTRKKSEEYS VTNTDETIVP PDVPSYLSSQ GTLSDRQETM VRTEGGHQAN BACU015106/1-969 QTRKKSEEYS VTNTDETIVP PDVPSYLSSQ GTLSDRQETM VRTEGGRQAN 901 950 ENSP00000273261/1-1093 GHIESNGVCP RDASHFPEPD THSVACRQPK LCAGSAYHKE PWKAMEKAEG ENSBTAP00000030722/1-1090 GHLESNGVCP RDAGLFPEVE AHGVICRQPK FCVG--FTKE PWKVVEKADG ENSTTRP00000001829/1-1023 GHIESNGVCP SDTGLFPEVE AHSITCRQPK LCVG--YTKE QWKVVENADG bmy_10593T0/1-982 GHIESNGVCP SNAGLFPEVE AHGITCRQPK LCVG--YTKE QWKVVEKADG BACU015106/1-969 GHIESNGVCP SDAGLFPEVE AHGITCRQPK LCVG--YTEE QRKVVEKADG 951 1000 ENSP00000273261/1-1093 TPGPHK-MEH GGRVVCSDCN TEVDCYSRGQ AFHPQPVSRD SAQPSAPNGP ENSBTAP00000030722/1-1090 PPGPQKTMER SGPVGCSDCS ADAHAYSQEP ACRLQP--GD SRQPGTSSSQ ENSTTRP00000001829/1-1023 TPGPQKMMEH GGPAVCGDCS SDTHTYSEEQ AFCPQPVPRD SAQPGTLSGL bmy_10593T0/1-982 TPGPQKMMEH GGPAVCGDCS TEAHSYSEEQ AFCPQPVPRD STQPGTLSSL BACU015106/1-969 TPGPQKMMEP GGPAVCGDCS TEAHSHSEER AFCPQPVPRD STQPGTLSSL 1001 1050 ENSP00000273261/1-1093 EPGGSDQEHS PHHQCSRTAA GSCPECQGSL YPSNHDRMLT AVKKKPMASL ENSBTAP00000030722/1-1090 EPSLSEHPHS ALHPSR---- -------GPL YPSNHDRTRA ALKR-PAAPL ENSTTRP00000001829/1-1023 EPSPSDHPRS SQQQSSGAAD GSRSRCRGSL YPSNHDRMLA ALKK-PAAPL bmy_10593T0/1-982 QPSPSDRPRS PQHRGSGAAD GSRGHCRGSL YPSNHDRMLA ALKK-PAAPL BACU015106/1-969 QPSPSGHPRS PQPWGSGAAD GSRGHCRGSL YPSNHDRMLA ALKK-PAAPL 1051 1100 ENSP00000273261/1-1093 DGKGDSSWTL ARLYHPDSTE LQPASSLTSG SPERAEA--- --------QY ENSBTAP00000030722/1-1090 DGKGASSWTL ARLCEPDSLD LQPSSVLTAG KPELADAASG SPDVPGEGQH ENSTTRP00000001829/1-1023 DGKGASSWTI ARLCDLDPSD LQPSCALTLG KPELTEA--- --------QH bmy_10593T0/1-982 DGKGASSWTI ARLCELDPLD LQPSCALTPG KPELTEAASG FPDVPSEGQH BACU015106/1-969 DGKGASSWTI ARLCELDPLD LQPSCALTPG KPELTEAASG ---LPSEGQH 1101 1150 ENSP00000273261/1-1093 LLVSNGHLPK ACDASPESTP LTGQLPGKQR VPLLLAPKS ENSBTAP00000030722/1-1090 LLLSNGHIPQ ACDSGSESTP LTGQSPGRRS TPLLFAPKS ENSTTRP00000001829/1-1023 LLLSNGHLPQ ACDSGSESTP VTGQPPGRRS APLLFAPKS bmy_10593T0/1-982 LLLSNGHLPQ ACGSGSESTP VTGQPPGRRS APLLFAPRS BACU015106/1-969 LLLSNGHLPQ ASDSGSESTP VTGQPPGRRS APLLFAPKS