KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:40:52 2014 Check: 00 .. Name: bmy_14177T0/1-534 Len: 586 Check: 9074 Weight: 1.00 Name: ENSTTRP00000014590/1-579 Len: 586 Check: 5666 Weight: 1.00 Name: BACU015075/1-469 Len: 586 Check: 4148 Weight: 1.00 Name: ENSBTAP00000030687/1-579 Len: 586 Check: 2968 Weight: 1.00 Name: ENSP00000348472/1-578 Len: 586 Check: 714 Weight: 1.00 // 1 50 bmy_14177T0/1-534 ----MSPP-- ---------- ---------- ---------- ------EFPR ENSTTRP00000014590/1-579 MAFMEKPPAG KVLLDDTVPL TAAIEASQSL QSHTEYIIRV QRGISVENSW BACU015075/1-469 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000030687/1-579 MAFMEKLPAG KVLLDDTVPL TAAIEASQSL QSHTEYIIRV QRGISVENSW ENSP00000348472/1-578 MAFMEKPPAG KVLLDDTVPL TAAIEASQSL QSHTEYIIRV QRGISVENSW 51 100 bmy_14177T0/1-534 LIVRRYSDFD LLNNSLQIGG LSLPLPPKKL IGNMDREFIA ERQKGLQNYL ENSTTRP00000014590/1-579 QIVRRYSDFD LLNNSLQIAG LSLPLPPKKL IGNMDREFIA ERQKGLQNYL BACU015075/1-469 ---------- ---------- ---------- ---MDREFIA ERQKGLQNYL ENSBTAP00000030687/1-579 QIVRRYSDFD LLNNSLQIAG LSLPLPPKKL IGNMDREFIA ERQKGLQNYL ENSP00000348472/1-578 QIVRRYSDFD LLNNSLQIAG LSLPLPPKKL IGNMDREFIA ERQKGLQNYL 101 150 bmy_14177T0/1-534 NVITTNHILS NCELVKKFLD PNNYSASYTE IALQQVSMFF RSEPKWEVVE ENSTTRP00000014590/1-579 NVITTNHILS NCELVKKFLD PNNYSASYTE IALQQVSMFF RSEPKWVVVE BACU015075/1-469 NVITTNHILS NCELVKKFLD PNNYSASYTE IALQQVSMFF RSEPKWEEGE ENSBTAP00000030687/1-579 NVITTNHILS NCELVKKFLD PNNYSANYTE IALQHVSMFF RSEPKWEVVE ENSP00000348472/1-578 NVITTNHILS NCELVKKFLD PNNYSANYTE IALQQVSMFF RSEPKWEVVE 151 200 bmy_14177T0/1-534 PLKDIGWRIR KKYFLMKIKN QPKERLVLSW ADLGPDKYLS DKDFQCLIKL ENSTTRP00000014590/1-579 PLKDIGWRIR KKYFLMKIKN QPKERLVLSW ADLGPDKYLS DKDFQYLIKL BACU015075/1-469 PLKDIGWRIR KKYFLMKIKN QPKERLVLSW ADLGPDKYLS DKDFQCLIKL ENSBTAP00000030687/1-579 PLKDIGWRIR KKYFLMKIKN QPKERLVLSW ADLGPDKYLS DKDFQCLIKL ENSP00000348472/1-578 PLKDIGWRIR KKYFLMKIKN QPKERLVLSW ADLGPDKYLS DKDFQCLIKL 201 250 bmy_14177T0/1-534 LPSCLHPYIY RVTFATANES SALLIRMFNE KGTLKDLIYK AKPKDPFLRK ENSTTRP00000014590/1-579 LPSCLHPYIY RVTFATANES SALLIRMFNE KGTLKDLIYK XXXXXXXXXX BACU015075/1-469 LPSCLHPFIY RVTFATANES SALLIRMFNE KGTLKDLIYK AKPKDPFLRK ENSBTAP00000030687/1-579 LPSCLHPYIY RVTFATANES SALLIRMFNE KGTLKDLIYK AKPKDPFLKK ENSP00000348472/1-578 LPSCLHPYIY RVTFATANES SALLIRMFNE KGTLKDLIYK AKPKDPFLKK 251 300 bmy_14177T0/1-534 YCNPKKIQGL ELQQIKTYGR QILEVLKFLH DKGFPYGHLH ASNVMLEGDA ENSTTRP00000014590/1-579 XXXXXXXXXX XXXXXXXXXX XXXXVLKFLH DKGFPYGHLH ASNVMLEGDA BACU015075/1-469 YCNPKKIQGL ELQQIKTYGR QILEVLKFLH DKGFPYGHLH ASNVMLEGDT ENSBTAP00000030687/1-579 YCNPKKVQGL ELQQIKTYGR QVLEVLKFLH DKGFPYGHLH ASNVMLDGDT ENSP00000348472/1-578 YCNPKKIQGL ELQQIKTYGR QILEVLKFLH DKGFPYGHLH ASNVMLDGDT 301 350 bmy_14177T0/1-534 CRLLDLENSL LGLPSFYRSY FSQFRKINTL ESVDVHCFGH LLYEMTYGRP ENSTTRP00000014590/1-579 CRLLDLENSL LGLPSFYRSY FSQFRKINTL ESVDVHCFGH LLYEMTYGRP BACU015075/1-469 CRLLDLENSL LGLPSFYRSY FSQFRKINTL ESVDVHCFGH LLYEMTYGRP ENSBTAP00000030687/1-579 CRLLDLENSL LGLPSFYRSY FSQFRKINTL ESVDVHCFGH LLYEMTYGRP ENSP00000348472/1-578 CRLLDLENSL LGLPSFYRSY FSQFRKINTL ESVDVHCFGH LLYEMTYGRP 351 400 bmy_14177T0/1-534 PDSVPVDSFP PAPSMAVVAV LESTLSCEAC KNGMPTVSRL LQMPLFSDVL ENSTTRP00000014590/1-579 PDSVPVDSFP PAPSMAVVAV LESTLSCEAC KNGMPTVSRL LQMPLFSDVL BACU015075/1-469 PDSVPVDSFP PAPSMAVVAV LESTLSCEAC KNGMPTVSRL LQMPLFSDVL ENSBTAP00000030687/1-579 PDSVPVDSFP PAPSMAVVAV LESTLSCEAC KNGMPTVSRL LQMPLFSDVL ENSP00000348472/1-578 PDSVPVDSFP PAPSMAVVAV LESTLSCEAC KNGMPTISRL LQMPLFSDVL 401 450 bmy_14177T0/1-534 LTTSEKPQFK IPTKLKEALR IAKECIEKRL IEEQKQIHQH RRLTRAQSHH ENSTTRP00000014590/1-579 LTTSEKPQFK IPTKLKEALR IAKECIEKRL IEEQKQIHQH RRLTRAQSHH BACU015075/1-469 LTTSEKPQFK ---------- ---------- ------IHQH RRLTRAQSHH ENSBTAP00000030687/1-579 LTTSEKPQFK IPTKLKEALR IAKECIEKRL IEEQKQIHQH RRLTRAQSHH ENSP00000348472/1-578 LTTSEKPQFK IPTKLKEALR IAKECIEKRL IEEQKQIHQH RRLTRAQSHH 451 500 bmy_14177T0/1-534 GSEEERKKRK ILARKKSKRS AVENSEEHSA KYSNSNNSVG --------PR ENSTTRP00000014590/1-579 GSEEERKKRK ILARKKSKRS AVENNEEHSA KYSNSNNSAG SGASSPLTSP BACU015075/1-469 GSEEERKKRK ILARKKSKRS AVENSEEHSA KYSNSNNS-G SGASSPLTSP ENSBTAP00000030687/1-579 GSEEERKRRK ILARKKSKRS AVENNEEHSA KYSNSNNSAG SGASSPLTSP ENSP00000348472/1-578 GSEEERKKRK ILARKKSKRS ALENSEEHSA KYSNSNNSAG SGASSPLTSP 501 550 bmy_14177T0/1-534 SQRLGPGVKG SWVFLGSVVT NAENKRALSQ GRIATAFRGS QDSSARRHLR ENSTTRP00000014590/1-579 SSPTPPSTAG MSTLPPPPPP APPPPAAPLP PASTEAPTQL PPQAVNGVSR BACU015075/1-469 SSPTPPSTAG MSALPPPPPP APPPPAAPLP PASTEAPTQL PPQAVNGVSR ENSBTAP00000030687/1-579 SSPTPPSTAG MSALPPPPPP PPPPAAAPSP PSSTEAPSQF PPQAVNGVSR ENSP00000348472/1-578 SSPTPPSTSG ISALPPPPPP -PPPPAAPLP PASTEAPAQL SSQAVNGMSR 551 600 bmy_14177T0/1-534 AYWVTSL--L TDGSISPGRK THATYNARPP VYQQSL ENSTTRP00000014590/1-579 GALLSSIQNF QKGTL---RK AETCDHSAPK IG---- BACU015075/1-469 GALLSSIQNF QKGTL---RK AETCDHSAPK IG---- ENSBTAP00000030687/1-579 GALLSSIQNF QKGTL---RK AETCDHSAPK IG---- ENSP00000348472/1-578 GALLSSIQNF QKGTL---RK AKTCDHSAPK IG----