KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:56 2014 Check: 00 .. Name: ENSP00000253925/1-1202 Len: 1496 Check: 8126 Weight: 1.00 Name: bmy_14357T0/1-947 Len: 1496 Check: 8810 Weight: 1.00 Name: ENSBTAP00000029933/1-1202 Len: 1496 Check: 6050 Weight: 1.00 Name: BACU003574/1-526 Len: 1496 Check: 8504 Weight: 1.00 Name: ENSTTRP00000002949/1-1200 Len: 1496 Check: 8501 Weight: 1.00 // 1 50 ENSP00000253925/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 ---------- ---------- ---------- ---------- ---------- BACU003574/1-526 MIPGEPAPVP VTEEHVTQAQ PPSPAVRKGS PLSSGPADVV CSPDHKPKTV ENSTTRP00000002949/1-1200 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000253925/1-1202 ---------- ---------- ---------- ---------- MMCEVMPTIS bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 ---------- ---------- ---------- ---------- MMCEVMPTIS BACU003574/1-526 EIQMNESTPR RQLEEVRICW FTWSGPPPCG RSARALSPGQ MMCEVMPTIS ENSTTRP00000002949/1-1200 ---------- ---------- ---------- ---------- MMCEVMPTIS 101 150 ENSP00000253925/1-1202 EAEGPPGGGG GHGSGSPSQP DADSHFEQLM VSMLEERDRL LDTLRETQET bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 EAEGPPGGSG SQGSSSPSQP DADSHFEQLM VSMLEERDRL LDTLRETQET BACU003574/1-526 EAEGPPGGSG SHGSSSPSQP DADSHFEQLM VSMLEERDRL LDTLRETQET ENSTTRP00000002949/1-1200 EAEGPPGGSG SHGSSSPSQP DADSHFEQLM VSMLEERDRL LDTLRETQET 151 200 ENSP00000253925/1-1202 LALTQGKLHE VGHERDSLQR QLNTALPQEF AALTKELNVC REQLLEREEE bmy_14357T0/1-947 ---------- ---------- --------EF AALTKELNVC REQLLEREEE ENSBTAP00000029933/1-1202 LALTQGKLHE VGHERDSLQR QLNTALPQEF AALTKELNVC REQLLEREEE BACU003574/1-526 LALTQGKLHE VGHERDSLQR QLNTALPQEF AALTKELNVC REQLLEREEE ENSTTRP00000002949/1-1200 LALTQGKLHE VGHERDSLQR QLNTALPQEF AALTKELNVC REQLLEREEE 201 250 ENSP00000253925/1-1202 IAELKAERNN TR-------- ---------- ---------- ---------- bmy_14357T0/1-947 IAELKAERNN TRVSRGFSVL TFASGSRLGP VLLSLNSEDD PLCLSLNTFR ENSBTAP00000029933/1-1202 IAELKAERNN TR-------- ---------- ---------- ---------- BACU003574/1-526 IAELKAERNN TR-------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 IAELKAERNN TR-------- ---------- ---------- ---------- 251 300 ENSP00000253925/1-1202 --------LL LEHLECLVSR HERSLRMTVV KRQAQSPAGV SSEVEVLKAL bmy_14357T0/1-947 HFPTERTALL LEHLECLVSR HERSLRMTVV KRQAQSPAGV SSEVEVLKAL ENSBTAP00000029933/1-1202 --------LL LEHLECLVSR HERSLRMTVV KRQAQSPAGV SSEVEVLKAL BACU003574/1-526 --------LL LEHLECLVSR HERSLRMTVV KRQAQSPAGV SSEVEVLKAL ENSTTRP00000002949/1-1200 --------LL LEHLECLVSR HERSLRMTVV KRQAQSPAGV SSEVEVLKAL 301 350 ENSP00000253925/1-1202 KSLFEHHKAL DEKVRERLRV ALERCSLLEE ELGATHKELM ILKEQNNQKK bmy_14357T0/1-947 KSLFEHHKAL DEKVRERLRV ALERCSLLEE ELGATH---- ---------- ENSBTAP00000029933/1-1202 KSLFEHHKAL DEKVRERLRV ALERCSLLEE ELGATHKELM ILKEQNNQKK BACU003574/1-526 KSLFEHHKAL DEKVRERLRV ALERCSLLEE ELGATHKELM ILKEQNNQKK ENSTTRP00000002949/1-1200 KSLFEHHKAL DEKVRERLRV ALERCSLLEE ELGAAH--LM ILKEQNNQKK 351 400 ENSP00000253925/1-1202 TLTDGVLDIN HEQENTPSTS GKRSSDGSLS HEEDLAKVIE LQEIISKQSR bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 VLTDGVLDVN HEQESAPSAN GKRSSDGSLS HEEDLAKVME LQEVIDKQSR BACU003574/1-526 TLTDGVLDIN HEQENTPSAN GKRSSDGSLS HEEDLAKVIE LQEIIDKQSR ENSTTRP00000002949/1-1200 TLTDGVLDIN HEQENTPSAN GKRSSDGSLS HEEDLAKVIE LQEVIDKQSR 401 450 ENSP00000253925/1-1202 EQSQMKERLA SLSSHVTELE EDLDTARKDL IKSEEMNTKL QRDVREAMAQ bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ----KEAMAQ ENSBTAP00000029933/1-1202 EQSQMKERLA ALSAHVTELE EDLDTARKDL IKSEEVNTKL QRDVREAMAQ BACU003574/1-526 EQSQMKERLA ALSSHVTELE EDLDTARKDL IKSEEMNTKL QRDVREAMAQ ENSTTRP00000002949/1-1200 EQSQMKERLA ALSSHVTELE EDLDTARKDL IKSEEVNTKL QRDVREAMAQ 451 500 ENSP00000253925/1-1202 KEDMEERITT LEKRYLAAQR EATSVHDLND KLENEIANKD SMHRQTEDKN bmy_14357T0/1-947 KEDMEERVTT LEKRYLAAQR EATSVHDLND KLENEIANKE SMHRQV---- ENSBTAP00000029933/1-1202 KEDMEERITT LEKRYLAAQR EATSVHDLND KLENEIANKD SMHRQTEDKN BACU003574/1-526 KEDMEERVTT LEKRYLAAQR EATSVHDLND KLENEIANKE SMHRQTEDKN ENSTTRP00000002949/1-1200 KEDMEERVTT LEKRYLAAQR EATSVHDLND KLENEIANKE SMHRQTEDKN 501 550 ENSP00000253925/1-1202 RQLQERLELA EQKLQQTLRK AETLPEVEAE LAQRVAALSK AEERHGNIEE bmy_14357T0/1-947 ---------- -VKLQQTLRR AETLPEVEAE LAQRVAALSK AEERHGNIEE ENSBTAP00000029933/1-1202 RQLQERLELA EQKLQQTLRR AETLPEVEAE LAQRVAALSK AEERHGNIEE BACU003574/1-526 RQLQERLELA EQKLQQTLRR AETLPEVEAE LAQRVAALSK V--------- ENSTTRP00000002949/1-1200 RQLQERLELA EQKLQQTLRR AETLPEVEAE LAQRVAALSK AEERHGNIEE 551 600 ENSP00000253925/1-1202 RLRQMEAQLE EKNQELQRAR QREKMNEEHN KRLSDTVDKL LSESNERLQL bmy_14357T0/1-947 RLRQMEAQLE EKHQELQRAR QREKMNEEHN KRLSDTVDKL LSESNERLQL ENSBTAP00000029933/1-1202 RLRQMEAQLE EKNQELQRAR QREKMNEEHN KRLSDTVDKL LSESNERLQL BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 RLRQMEAQLE EKHQELQRAR QREKMNEEHN KRLSDTVDKL LSESNERLQL 601 650 ENSP00000253925/1-1202 HLKERMAALE DKNSLLREVE SAKKQLEETQ HDKDQLVLNI EALRAELDHM bmy_14357T0/1-947 HLKERMAALE D--------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 HLKERMAALE DKNSLLREVE NVKKQLEEMQ NDKDQLILNL ETLRAELDQT BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 HLKERMAALE DKNSLLREVE NAKKQLEEMQ HDKDQLVLTL EALRAELDQT 651 700 ENSP00000253925/1-1202 RLRGASLHHG RPHLGSVPDF RFPMADGHTD SYSTSAVLRR PQKGRLAALR bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 RLRGAPLHQG RPHLGSVPDF RFPVADGPAD SFSGAAVLRR PQKGRLAALR BACU003574/1-526 ---------- ---------- -LP------- ---------- ---------- ENSTTRP00000002949/1-1200 GLRGAPLHHS RPHLGSVPDF RFPMADGPSD SFSSSAVLRR PQKVRQAALR 701 750 ENSP00000253925/1-1202 DEPSKVQTLN EQDWERAQQA SVLANVAQAF ESDADVSDGE DDRDTLLSSV bmy_14357T0/1-947 ----KVQTLN EQDWERAQQA SVLASVAQAF ESDADASDGE GDRDTLFSSA ENSBTAP00000029933/1-1202 DEPSKVQTLN EQDWERAQQA SVLANVAQAF ESDVDVSDGE GDRDALFSSA BACU003574/1-526 ---------- ---WVSSR-- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 DEPSKVQTLD EQDWERARQA SVLAHVAQAF ESGADVPDGA GDGDTLFSSA 751 800 ENSP00000253925/1-1202 DLLSPSGQAD AHTLAMMLQE QLDAINKEIR LIQEEKENTE QRAEEIESRV bmy_14357T0/1-947 SLLSPSGQAD AQTLAMMLQE QLDAINKEIR LIQEEKENTE QRAEEIESRV ENSBTAP00000029933/1-1202 ALLSPSGQAD AQTLAMMLQE QLDAINKEIR LIQEEKENTE QRAEEIESRV BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 TLLSPSGQAD AQTLAMMLQE QLDAINKEIR LIQEEKENTE QRAEEIESRV 801 850 ENSP00000253925/1-1202 GSGSLDNLGR FRSMSSIPPY PASSLASSSP PGSGRSTPRR IPHSPAREVD bmy_14357T0/1-947 GSASLDSLGR FRSVSSIPPY PASSRASSSP PSSGRPTPRR APHSPAREVD ENSBTAP00000029933/1-1202 GSGSLDSLGR FRSMSSIPPY PASSLAGSSP PSSGRSTPRR MPHSPAREVD BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 GSGSLDSLGR FRSVSSIPPY PASSRASSSP PSSGRPTPRR APHSPAREVD 851 900 ENSP00000253925/1-1202 RLGVMTLLPP SREEVRDDKT TIKCETSPPS SPRALRLDRL HKGALHTVSH bmy_14357T0/1-947 RLGVMTLLPA SREEVRDDKT TIKCETSPPS SPRSLRLDRL HAGALHTASH ENSBTAP00000029933/1-1202 RLGIMTLLPA SREEVRDDKT TIKCETSPPA SPRSLRLDRL HPGPLHAASH BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 RLGVMTLLPA SRDEVRDDKT TIKCETSPPS SPRSLRLDRL HTGALHTASH 901 950 ENSP00000253925/1-1202 EDIRDIR--- ---------- ---------- ---------- ---------- bmy_14357T0/1-947 EDIRDARKTL RGSRMRSRPF RAVKCPTPSF RAPRVPPLRR PQAALDGGHA ENSBTAP00000029933/1-1202 EDIRDAR--- ---------- ---------- ---------- ---------- BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 EDIRDAR--- ---------- ---------- ---------- ---------- 951 1000 ENSP00000253925/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_14357T0/1-947 WSSLQRRRTV TIALLPRRGR SHSGWREEPP FPGGLCACWA ATWRGSGCAL ENSBTAP00000029933/1-1202 ---------- ---------- ---------- ---------- ---------- BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000253925/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_14357T0/1-947 HCVVWSRAPP SREESSHRSL GPSGAAARGA EPAPPVRSAA REARALWGLC ENSBTAP00000029933/1-1202 ---------- ---------- ---------- ---------- ---------- BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000253925/1-1202 ---------- ----NSTGSQ DGPVSNPSSS NSSQDSLHKA PKKKGIKSSI bmy_14357T0/1-947 LREAPPLKVV FCPQSSTGSQ DGPASNPSSS NSSQDSLHKA PKKKGIKSSI ENSBTAP00000029933/1-1202 ---------- ----NSTGSQ DGPVSNPSSS NSSQDSLHKA PKKKGIKSSI BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 ---------- ----NSTGSQ DGPASNPSSS SSSQDSLHKA PKKKGIKSSI 1101 1150 ENSP00000253925/1-1202 GRLFGKKEKG RPGQTGKEAL GQAGVSETDN SSQDALGLSK LGGQAEKNRK bmy_14357T0/1-947 GRLFGKKEKG RPGALGKESL GQAVISETEN SSQDALGLSK LGGQAEKNRK ENSBTAP00000029933/1-1202 GRLFGKKEKG RPGHPGKEAL GPAGVSETEN SSQDALGLSK LGGQAEKNRK BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 GRLFGKKEKG RPGALGKESL GQAVISETEN SSQDALGLSK LGGQAEKNRK 1151 1200 ENSP00000253925/1-1202 LQKKHELLEE ARRQGLPFAQ WDGPTVVVWL ELWVGMPAWY VAACRANVKS bmy_14357T0/1-947 LQKKHELLEE ARRQGLPFAQ WDGPTVVVWL ELWVGMPAWY VAACRANVKS ENSBTAP00000029933/1-1202 LQKKHELLEE ARRQGLPFAQ WDGPTVVVWL ELWVGMPAWY VAACRANVKS BACU003574/1-526 ---------- ARRQSLALRM ICSRSLSLW- ---------- --SCQGT--- ENSTTRP00000002949/1-1200 LQKKHELLEE ARRQGLPFAQ WDGPTVVVWL ELWVGMPAWY VAACRANVKS 1201 1250 ENSP00000253925/1-1202 GAIMSALSDT EIQREIGISN PLHRLKLRLA IQEIMSLTSP SAPPTSRT-T bmy_14357T0/1-947 GAIMSALSDT EIQREIGISN PLHRLKLRLA IQEIMSLTSP SAPPTSRTQT ENSBTAP00000029933/1-1202 GAIMSALSDT EIQREIGISN PLHRLKLRLA IQEIMSLTSP SAPPTSRT-T BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 GAIMSALSDT EIQREIGISN PLHRLKLRLA IQEIMSLTSP SAPPTSRT-X 1251 1300 ENSP00000253925/1-1202 LAYGDMNHEW IGNEWLPSLG LPQYRSYFME CLVDARMLDH LTKKDLRGQL bmy_14357T0/1-947 LAYGDMNHEW IGNEWLPSLG LPQYRSYFME CLVDARMLDH LTKKDLRGQL ENSBTAP00000029933/1-1202 LAYGDMNHEW IGNEWLPSLG LPQYRSYFME CLVDARMLDH LTKKDLRGQL BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1301 1350 ENSP00000253925/1-1202 KMVDSFHRNS FQCGIMCLRR LNYDRKELER KREESQSEIK DVLVWSNDRV bmy_14357T0/1-947 KMVDSFHRNS FQCGIMCLRR LNYDRKELER KREESQNELK G--------- ENSBTAP00000029933/1-1202 KMVDSFHRNS FQCGIMCLRR LNYDRKELER KREESQNELK DVLVWSNDRV BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 XXXXXXXXXX XXXXXXXXXX XNYDRKELER KREESQNELK DVLVWSNDRV 1351 1400 ENSP00000253925/1-1202 IRWILSIGLK EYANNLIESG VHGALLALDE TFDFSALALL LQIPTQNTQA bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 IRWILSIGLK EYANNLVESG VHGALLALDE TFDFNALALL LQIPTQNTQA BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 IRWILSIGLK EYANNLVESG VHGALLALDE TFDFNALALL LQIPTQNTQA 1401 1450 ENSP00000253925/1-1202 RAVLEREFNN LLVMGTDRRF DEDDDKSFRR APSWRKKFRP KDIRGLAAGS bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029933/1-1202 RAVLEREFNN LLVMGTDRRF DEDDDKSFRR APSWRKKFRP KDVRGLAAGS BACU003574/1-526 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002949/1-1200 RAVLEREFNN LLVMGTDRRF DEDDDKSFRR APSWRKKFRP KDVRGLAAGS 1451 1500 ENSP00000253925/1-1202 AETLPANFRV TSSMSSPSMQ PKKMQMDGNV SGTQRLDSAT VRTYSC bmy_14357T0/1-947 ---------- ---------- ---------- ---------- ------ ENSBTAP00000029933/1-1202 AETLPANFRV PSSLSSPSVQ PRKVQPDGSV AGTQRLDSAT VRTYSC BACU003574/1-526 ---------- ---------- ---------- ---------- ------ ENSTTRP00000002949/1-1200 AETLPANFRV PSSLSSPSVQ PKKMQLDGSV AGAQRLDSAA VRTYSC