KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:46 2014 Check: 00 .. Name: ENSP00000349291/1-1250 Len: 1291 Check: 9884 Weight: 1.00 Name: ENSTTRP00000004197/1-1256 Len: 1291 Check: 4102 Weight: 1.00 Name: ENSBTAP00000029792/1-1255 Len: 1291 Check: 9494 Weight: 1.00 Name: bmy_03356T0/1-857 Len: 1291 Check: 6478 Weight: 1.00 Name: BACU002907/1-1212 Len: 1291 Check: 826 Weight: 1.00 // 1 50 ENSP00000349291/1-1250 MWLSPEEVLV ANALWVTERA NPFFVLQRRR GHGRGGGLTG LLVGTLDVVL ENSTTRP00000004197/1-1256 MWLGPEEVLV ANALWVTERA NPFFVLQRRR GHGKGGGLTG LLVGTLDVVL ENSBTAP00000029792/1-1255 MWLGTEEVLV ANALWVTERA NPFFVLQRRR GHGKGGGLTG LLVGTLDVVL bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 ---------- ---------- ---------- --------PG LLVGTLDVVL 51 100 ENSP00000349291/1-1250 DSSARVAPYR ILHQTQDSQV YWTVACGSSR KEITKHWEWL ENNLLQTLSI ENSTTRP00000004197/1-1256 DSSARVAPYR ILHQTQDSQV YWTVACGSSR KEITKHWEWL ENNLLQTLSI ENSBTAP00000029792/1-1255 DSSARVAPYR ILHQTQDSQV YWTVACGSSR KEITKHWEWL ENNLLQTLSI bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 DSSARVAPYR ILHQTQDSQV YWTVACGSSR KEITKHWEWL ENNLLQTLSI 101 150 ENSP00000349291/1-1250 FDSEEDITTF VKGKIHGIIA EENKNLQPQG DEDPGKFKEA ELKMRKQFGM ENSTTRP00000004197/1-1256 FDTEEDITTF VKGKIHGIIA EENKNLQPQG DEDPGKFKEA ELKMRKQFGM ENSBTAP00000029792/1-1255 FDNEEDITTF VKGKIHGIIA EENKNVQPQG DEDPGKFKEA ELKMRKQFGM bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 FDNEEDITTF VKGKIHGIIA EENKNLQPQG DEDPGKFKEA ELKMRKQFGM 151 200 ENSP00000349291/1-1250 PEGEKLVNYY SCSYWKGRVP RQGWLYLTVN HLCFYSFLLG KEVSLVVQWV ENSTTRP00000004197/1-1256 PEGEKLVNYY SCSYWKGRVP RQGWLYLTVN HLCFYSFLLG KEXXXXXXXX ENSBTAP00000029792/1-1255 PDGEKLVNYY SCSYWKGRVP RQGWLYLTVN HLCFYSFLLG KEVSLVVQWV bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 PEGEKLVNYY SCSYWKGRVP RQGWLYLTVN HLCFYSFLLG KEVSLVVQWV 201 250 ENSP00000349291/1-1250 DITRLEKNAT LLFPESIRVD TRDQELFFSM FLNIGETFKL MEQLANLAMR ENSTTRP00000004197/1-1256 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXNLAMR ENSBTAP00000029792/1-1255 DVTRLEKNAT LLFPESIRVD TRDQELFFSM FLNIGETFKL MEQLANLAVR bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 DVTRLEKNAT LLFPESIRVD TRDQELFFSM FLNISETFKL MEQLANLAMR 251 300 ENSP00000349291/1-1250 QLLDSEGFLE DKALPRPIRP HRNISALKRD LDARAKNECY RATFRLPRDE ENSTTRP00000004197/1-1256 QLLDSEGFLE DKAL-RPPRP HSNISALKRD LDARAKNECY CATFRLPGDE ENSBTAP00000029792/1-1255 QLLDSEGFLE ERAPPRPPRP HRNISALKRD LDARAKNECY RATFRLPRDE bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 QLLDSEGFLE DKALPRPPRP HRNISALKRD LDARAKNECY RATFRLPGDE 301 350 ENSP00000349291/1-1250 RLDGHTSCTL WTPFNKLHIP GQMFISNNYI CFASKEEDAC HLIIPLREVT ENSTTRP00000004197/1-1256 RLDGHTGCTL WTPFNKLHIP GQMFISSNYI CFASKEEDAC HLIIPLREVT ENSBTAP00000029792/1-1255 RLDGHTSCTL WTPFNKLHIP GQMFISSNYI CFASKEEDAC HLIIPLREVT bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 RLDGHTGCTL WTPFNKLHIP GQMFISSNYI CFASKEEDAC HLIIPLREVT 351 400 ENSP00000349291/1-1250 IVEKADSSSV LPSPLSISTK SKMTFLFANL KDRDFLVQRI SDFLQKTPSK ENSTTRP00000004197/1-1256 IVEKADSSSV LPSPLSISTK SKMTFLFANL KDRDFLVQRI SDFLQKMPSK ENSBTAP00000029792/1-1255 IVEKADCSSV LPSPLSISTK SKMTFLFANL KDREFLVERI SDFLQKMPSK bmy_03356T0/1-857 ---------- ---------- ---------- ---------- ---------- BACU002907/1-1212 IVEKADSSSV LPSPLSISTK SKMTFLFANL KDRDFLVQRI SDFLQKMPSK 401 450 ENSP00000349291/1-1250 QPG-SIGSRK ASVVDPSTE- ---------- ---SSPAPQE GSEQPASPAS ENSTTRP00000004197/1-1256 PPGNSRAGRK ASIVDSAPE- ---------- ---SSPAPQE VSEQPASPTS ENSBTAP00000029792/1-1255 PSGGSRAESK ASIVDAAPE- ---------- ---PSPAPQE LSEQPG-PTS bmy_03356T0/1-857 ---------- ---------- ---------- ---SSPAPQE VSEQPASPTS BACU002907/1-1212 PPGNSRAGRK ASIVDSAPEL THSVLSFPCC ISQSSPAPQE VSEQPASPTS 451 500 ENSP00000349291/1-1250 PLSSRQSFCA QEAPTASQGL LKLFQKNSPM EDLGAKGAKE KMKEESWHIH ENSTTRP00000004197/1-1256 PLGGLQGSHA REAPTASQGL LKLFQRNTPM EDLGAKGAKE KMKEESWHIH ENSBTAP00000029792/1-1255 PLGGLPGGRA QEAPTASQGL LRLFQRNTPV EDLGAKGAKE KMKEESWNIH bmy_03356T0/1-857 PLGGLQGSHA QEAPTASQGL LKLFQRNTPM EDLGAKGAKE KMKEESWNIH BACU002907/1-1212 PLGGLQGSHA QEAPTASQGL LKLFQRNTPM EDLGAKGAKE KMKEESWNIH 501 550 ENSP00000349291/1-1250 FFEYGRGVCM YRTAKTRALV LKGIPESLRG ELWLLFSGAW NEMVTHPGYY ENSTTRP00000004197/1-1256 FFEYGRGMCM YRTARTRELV LKGIPESLRG ELWLLFSGAW NEMVTHPGYY ENSBTAP00000029792/1-1255 FFEFGRGMCM YRTARTRELV LKGIPESLRG ELWLLFSGAW NEMVTHPGYY bmy_03356T0/1-857 FFEYGRGMCM YRTTRTRELV LKGIPESLRG ELWLLFSGAW NEMVTHPGYY BACU002907/1-1212 FFEFGRGMCM YRTTRTRELV LKGIPESLRG ELWLLFSGAW NEMVTHPGYY 551 600 ENSP00000349291/1-1250 AELVEKSTGK YSLATEEIER DLHRSMPEHP AFQNELGIAA LRRVLTAYAF ENSTTRP00000004197/1-1256 AELVEKSTGK YSLATEEIER DLHRSMPEHP AFQNELGIAA LRRVLTAYAF ENSBTAP00000029792/1-1255 AELVEKSMGK YSLATEEIER DLHRSMPEHP AFQNELGIAA LRRVLTAYAF bmy_03356T0/1-857 AELVEKSTGK NSLATEEIER DLHRSMPEHP AFQNELGIAA LRRVLTAYAF BACU002907/1-1212 AELVEKSTGK NSLATEEIER DLHRSMPEHP AFQNELGIAA LRRVLTAYAF 601 650 ENSP00000349291/1-1250 RNPTIGYCQA MNIVTSVLLL YGSEEEAFWL LVALCERMLP DYYNTRVVGA ENSTTRP00000004197/1-1256 RNPTIGYCQX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA ENSBTAP00000029792/1-1255 RNPTIGYCQA MNIVTSVLLL YGSEEEAFWL LVALCERMLP DYYNTRVVGA bmy_03356T0/1-857 RNPTIGYCQA MNIVTSVLLL YGSEEEAFWL LVALCERMLP DYYNTRVVGA BACU002907/1-1212 RNPTIGYCQA MNIVTSVLLL YGSEEEAFWL LVALCERMLP DYYNTRVVGA 651 700 ENSP00000349291/1-1250 LVDQGIFEEL TRDFLPQLSE KMQDLGVISS ISLSWFLTLF LSVMPFESAV ENSTTRP00000004197/1-1256 LVDQGIFEEL TRDFLPQLSE KMQDLGVIPS ISLSWFLTLF LSVMPFESAA ENSBTAP00000029792/1-1255 LVDQGIFEEL TRDFLPQLSK KMQDLGVISS ISLSWFLTLF LSVMPFESAV bmy_03356T0/1-857 LVDQGIFEEL TRDFLPQLSE KMQDLGVISS ISLSWFLTLF LSVMPFESAA BACU002907/1-1212 LVDQGIFEEL TRDFLPQLSE KMQDLGVISS ISLSWFLTLF LSVMPFESAA 701 750 ENSP00000349291/1-1250 VIVDCFFYEG IKVILQVALA VLDANMEQLL GCSDEGEAMT MLGRYLDNVV ENSTTRP00000004197/1-1256 VIVDCFFYEG IKVILQVALA ILDANMEQLL GCSDEGEAMT VLGRYLDNVV ENSBTAP00000029792/1-1255 VIVDCFFYEG IKVILQVALA ILDANMEQLL GCGDEGEAMT VLGRYLDNVV bmy_03356T0/1-857 VIVDCFFYEG IKVILQVALA ILDANMEQLL GCSDEGEAMT VLGRYLDNVV BACU002907/1-1212 VIVDCFFYEG IKVILQVALA ILDANMEQLL GCSDEGEAMT VLGRYLDNVV 751 800 ENSP00000349291/1-1250 NKQSVSPPIP HLRALLSSSD DPPAEVDIFE LLKVSYEKFS SLRAEDIEQM ENSTTRP00000004197/1-1256 NKQSVSPPIP HLHALLTSGD DPPEEVDIFD LLKVSYEKFS SLRAEDIEQM ENSBTAP00000029792/1-1255 NKQSVSPPIP HLHALLTSGD DPPEEVDIFD LLKVSYEKFS SLRAEDIEQM bmy_03356T0/1-857 NKQSVSPPIP HLHALLTSGD DPPEEVDIFD LLKVSYEKFS SLRAEDIEQM BACU002907/1-1212 NKQSVSPPIP HLHALLTSGD DPPEEVDIFD LLKVSYEKFS SLRAEDIEQM 801 850 ENSP00000349291/1-1250 RFKQRLKVIQ SLEDTAKRSV ---------- ---------- VRAIPVDIGF ENSTTRP00000004197/1-1256 RFKQRLKVIQ SLEDTAKRSV ---------- ---------- VRAIPGDIGF ENSBTAP00000029792/1-1255 RFKQRLKVIQ SLEDTAKRSV ---------- ---------- VRAIPGDIGF bmy_03356T0/1-857 RFKQRLKVIQ SLEDTAKRSV VRTGPGSHGP RVQAGAGVGM VRAIPGDXGF BACU002907/1-1212 RFKQRLKVIQ SLEDTAKRSV ---------- ---------- VRAIPGDVGF 851 900 ENSP00000349291/1-1250 SIEELEDLYM VFKAKHLASQ YWGCSRTMAG RRDPSLPYLE QYRIDASQFR ENSTTRP00000004197/1-1256 SIEELEDLYM VFKAKQLASQ YWGSSRPAAV RRDPSLPYLE QYRIDTNQFQ ENSBTAP00000029792/1-1255 SIEELEDLYM VFKAKHLASQ YWGSSRPAAV RRDPSLPYLE QYRIDAHQFR bmy_03356T0/1-857 SIEELEDLYM VFKAKQLASQ YWGSSHPAAV RRDPSLPYLE QYRIDTNQFR BACU002907/1-1212 SIEELEDLYM VFKAKQLASQ YWGSSHPAAV RRDPSLPYLE QYRIDANQFQ 901 950 ENSP00000349291/1-1250 ELFASLTPWA CGSHTPLLAG RMFRLLDENK DSLINFKEFV TGMSGMYHGD ENSTTRP00000004197/1-1256 ELFASLTPWA CGSHTSVLAG RMFRLLDENK DSLINFKEFV TGISRMYHGD ENSBTAP00000029792/1-1255 ELFASLTPWA CGAHTPVLAG RMFRLLDENK DSLINFKEFV TGMSGMYHGD bmy_03356T0/1-857 ELFASLTPWA CGSHTPVLAG RMFRLLDENK DSLINFKEFV TGMSRMYHGD BACU002907/1-1212 ELFASLTPWA CGSHTPVLAG RMFRLLDENK DSLINFKEFV TGMSRMYHGD 951 1000 ENSP00000349291/1-1250 LTEKLKVLYK LHLPPALSPE EAESALEAAH YFTEDSSSEA SPLASDLDLF ENSTTRP00000004197/1-1256 LTEKLKVLYK LHLPPALSPE EAESALEATH YFTENSSSEA SPLASDLDLF ENSBTAP00000029792/1-1255 LTEKLKVLYK LHLPPALSPE EAESALEATH YFTEDSSSEA SPLASDLDLF bmy_03356T0/1-857 LTEKLKVLYK LHLPPALSPE EAESALEATH YFTENSSSEA SPLASDLDLF BACU002907/1-1212 LTEKLKVLYK LHLPPALSPE EAESALEATH YFTENSSSEA SPLASDLDLF 1001 1050 ENSP00000349291/1-1250 LPWEAQEALP QEEQEGSGS- --EERGEEKG TSSPDYRHYL RMWAKEKEAQ ENSTTRP00000004197/1-1256 LPWEAQEALQ QEEQEGAGND IQEKRREEKG TSPPDYRHYL RMWAKEKEVQ ENSBTAP00000029792/1-1255 LPWKVQEVLQ QEEREEAGND IQDKRREEKG TSPPDYRHYL RMWAKEKEVQ bmy_03356T0/1-857 LPWEAQEALQ QEEQEGAGND IQEKRREEKG TSPPDYRHYL RMWAKEKEVQ BACU002907/1-1212 LPWEAQ---- ---------- ------EEKG TSPPDYRHYL RMWAKEKEVQ 1051 1100 ENSP00000349291/1-1250 KETIKDLPKM NQEQFIELCK TLYNMFSEDP MEQDLYHAIA TVASLLLRIG ENSTTRP00000004197/1-1256 KETIKDLPKM NQEQFIELCK TLYNMFSEDP MEQDLYHAIA TVASLLLRIG ENSBTAP00000029792/1-1255 KETIKDLPKM NQEQFIELCK TLYNMFSEDP MEQDLYHAIA TVASLLLRIG bmy_03356T0/1-857 KETIKDLPKM NQEQFIELCK TLYNMFSEDP MEQDLYHAIA TVASLLLRIG BACU002907/1-1212 KETIKDLPKM NQEQFIELCK TLYNMFSEDP MEQDLYHAIA TVASLLLRIG 1101 1150 ENSP00000349291/1-1250 EVGKKFSART GR-KPRDCAT EEDEPPAPEL HQDAARELQP PAAGDPQAKA ENSTTRP00000004197/1-1256 EVGRRFSAWS GRGESRDSAP EEGEPPAPHP PQDVAQELQP PAAGDPQAKA ENSBTAP00000029792/1-1255 EVGKRFSAWP GR-KSRDSAP DEDESPAPDP PQDPAWELQP PAAGDPQAKA bmy_03356T0/1-857 EVGRRFSAWS GR-ETRDSAP EEGEPPAPDP PQDAAQELQP PAAGDPQAKA BACU002907/1-1212 EVGRRFSAWS GR-ETRDSAP EEGEPPAPDP PQDAAQELQP PAAGDPQAKA 1151 1200 ENSP00000349291/1-1250 GGDTHLGKAP QESQVVVEGG SGEGQGSPSQ LLSDDETKDD MSMSSYSVVS ENSTTRP00000004197/1-1256 GGDTHLGKAP QESQVVGEGG GGEGRGSPPQ PLSDDETKDD MSMSSYSVVS ENSBTAP00000029792/1-1255 GGDTHLGKTP QESQVVGEGG GGEGRGSPSQ PLSDDETKDD MSISSYSVVS bmy_03356T0/1-857 GGDTHLGKAP QESQVVGEGG GGEGQGSPSQ PLSDDETKDD MSMSSYSVVS BACU002907/1-1212 GGDAHLGKAP QESQVVGEGG GGEGQGSPSQ PLSDDETKDD MSMSSYSVVS 1201 1250 ENSP00000349291/1-1250 TGSLQCEDLA DDTVLVGGEA CSP--TARIG GTVDTDWCIS FEQILASILT ENSTTRP00000004197/1-1256 TGSLQCEDLA DDTVLVGGEA HSPVATTHSG GAVDTDWCIS FEQILASILT ENSBTAP00000029792/1-1255 AGSLQCEDLA DDTVLVGGEA RSPVATTHGG GTVDTDWCIS FEQILASILT bmy_03356T0/1-857 TGSLQCEDLA DDTVLVGGEA HSPMATTHTG GAVDTDWCIS FEQILASILT BACU002907/1-1212 TGSLQCEDLA DDTVLVGGEA HSPVATTPSG GAVDTDWCVS FEQILASILT 1251 1300 ENSP00000349291/1-1250 ESVLVNFFEK RVDIGLKIKD QKKVERQFST ASDHEQPGVS G ENSTTRP00000004197/1-1256 ESVLVNFFEK RVDIGLKIKD QRKVERQFST SSDHEQSAVL G ENSBTAP00000029792/1-1255 ESVLVNFFEK RVDIGLKIKD HRKVERQFST SSDHEQSVVL G bmy_03356T0/1-857 ESVLVNFFEK RVDIGLKIKD QRKVERQFST SSDHEQSAVL G BACU002907/1-1212 ESVLVNFFEK RVDIGLKIKD QRKVERQFST SSDHEQSAVL G