KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:43 2014 Check: 00 .. Name: ENSTTRP00000015072/1-1495 Len: 1581 Check: 5038 Weight: 1.00 Name: ENSP00000264431/1-1499 Len: 1581 Check: 5587 Weight: 1.00 Name: BACU010650/1-1421 Len: 1581 Check: 6087 Weight: 1.00 Name: bmy_09662T0/1-1337 Len: 1581 Check: 4174 Weight: 1.00 Name: ENSBTAP00000029739/1-1486 Len: 1581 Check: 4503 Weight: 1.00 // 1 50 ENSTTRP00000015072/1-1495 MKPLAIPANH GVMGQQEKHS LPADFTKLHL TDSLHPQVTH VSSSHSGCSI ENSP00000264431/1-1499 MKPLAIPANH GVMGQQEKHS LPADFTKLHL TDSLHPQVTH VSSSHSGCSI BACU010650/1-1421 ---------- ---------- ---------- ---------- ---------- bmy_09662T0/1-1337 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029739/1-1486 MKPLAIPANH GVMGQQEKHS LPADFTKLHL TDSLHPQVTH VSSSHSGCSI 51 100 ENSTTRP00000015072/1-1495 TSDSGSSSLS DIYQATESEA GEMDLSGLPE TAVDSEDDDD EEDIERASDP ENSP00000264431/1-1499 TSDSGSSSLS DIYQATESEA GDMDLSGLPE TAVDSEDDDD EEDIERASDP BACU010650/1-1421 ---------- ---------- --MDLSGLPE TAVDSEDDED EEDIERASDP bmy_09662T0/1-1337 ---------- ---------- --MDLSGLPE TAVDSEDDDD EEDIERASDP ENSBTAP00000029739/1-1486 TSDSGSSSLS DIYQATESEA GDMDLSGLPE TAVDSEDDDD EEDIERASDP 101 150 ENSTTRP00000015072/1-1495 LMSRDIVRDC LEKDPIDRTD DDIEQLLEFM HQLPAFANMT MSVRRELCAV ENSP00000264431/1-1499 LMSRDIVRDC LEKDPIDRTD DDIEQLLEFM HQLPAFANMT MSVRRELCAV BACU010650/1-1421 LMSRDVVRDC LEKDPIDRTD DDIEQLLEFM HQLPAFANMT MSVRRELCAV bmy_09662T0/1-1337 LMSRDIVRDC LEKDPIDRTD DDIEQLLEFM HQLPAFANMT MSVRRELCAV ENSBTAP00000029739/1-1486 LMSRDIVRDC LEKDPIDRTD DDIEQLLEFM HQLPAFANMT MSVRRELCAV 151 200 ENSTTRP00000015072/1-1495 MVFAVVERAG TIVLNNGEE- ---------- -LDSWSVILN GSVEVTYPDG ENSP00000264431/1-1499 MVFAVVERAG TIVLNDGEE- ---------- -LDSWSVILN GSVEVTYPDG BACU010650/1-1421 MVFAVVERAG TIVLNNGEE- ---------- -LDSWSVILN GSVEVTYPDG bmy_09662T0/1-1337 MVFAVVERAG TIVLNNGEEV RKYFCHLERL YLDSWSVILN GSVEVTYPDG ENSBTAP00000029739/1-1486 MVFAVVERAG TIVLNDGEE- ---------- -LDSWSVILN GSVEVTYPDG 201 250 ENSTTRP00000015072/1-1495 KAEILCMGNS FGVSPTMDKE YMKGVMRTKV DDCQFVCIAQ QDYCRILNQV ENSP00000264431/1-1499 KAEILCMGNS FGVSPTMDKE YMKGVMRTKV DDCQFVCIAQ QDYCRILNQV BACU010650/1-1421 KAEILCMGNS FGVSPTMDKE YMKGVMRTKV DDCQFVCIAQ QDYCRILNQV bmy_09662T0/1-1337 KAEILCMGNS FGVSPTMDKE YMKGVMRTKV DDCQFVCIAQ QDYCRILNQV ENSBTAP00000029739/1-1486 KAEILCMGNS FGVSPTMDKE YMKGVMRTKV DDCQFVCIAQ QDYCRILNQV 251 300 ENSTTRP00000015072/1-1495 EKNMQKVEEE GEIVMVKEHR ELDRTGTRKG HIVIKGTSER LTMHLVEEHS ENSP00000264431/1-1499 EKNMQKVEEE GEIVMVKEHR ELDRTGTRKG HIVIKGTSER LTMHLVEEHS BACU010650/1-1421 EKNMQKVEEE GEIVMVKEHR ELDRTGTRKG HIVIKGTSER LTMHLVEEHS bmy_09662T0/1-1337 EKNMQKVEEE GEIVMVKEHR ELDRTGTRKG HIVIKGTSER LTMHLVEEHS ENSBTAP00000029739/1-1486 EKNMQKVEEE GEIVMVKEHR ELDRTGTRKG HIVIKGTSER LTMHLVEEHS 301 350 ENSTTRP00000015072/1-1495 VVDPTFIEDF LLTYRTFLCS PMEVGKKLLE WFNDPSLRDK VTRVVLLWVN ENSP00000264431/1-1499 VVDPTFIEDF LLTYRTFLSS PMEVGKKLLE WFNDPSLRDK VTRVVLLWVN BACU010650/1-1421 VVDPTFIEDF LLTYRTFLCS PMEVGKKLLE WFNDPSLRDK VTRVVLLWVN bmy_09662T0/1-1337 VVDPTFIEDF LLTYRTFLCS PMEVGKKLLE WFNDPSLRDK VTRVVLLWVN ENSBTAP00000029739/1-1486 VVDPTFIEDF LLTYRTFLCS PMEVGKKLLE WFNDPSLRDK VTRVVLLWVN 351 400 ENSTTRP00000015072/1-1495 NHFNDFEGDP AMTRFLEEFE NNLEREKMGG HLRLLNIACA AKAKRRLMTL ENSP00000264431/1-1499 NHFNDFEGDP AMTRFLEEFE NNLEREKMGG HLRLLNIACA AKAKRRLMTL BACU010650/1-1421 NHFNDFEGDP AMTRFLEEFE NNLEREKMGG HLRLLNIACA AKAKRRLMTL bmy_09662T0/1-1337 NHFNDFEGDP AMTRFLEEFE NNLEREKMGG HLRLLNIACA AKAKRRLMTL ENSBTAP00000029739/1-1486 NHFNDFEGDP AMTRFLEEFE NNLEREKMGG HLRLLNIACA AKAKRRLMTL 401 450 ENSTTRP00000015072/1-1495 TKPSREAPLP FILLGGSEKG FGIFVDSVDS GSKATEAGLK RGDQILEVNG ENSP00000264431/1-1499 TKPSREAPLP FILLGGSEKG FGIFVDSVDS GSKATEAGLK RGDQILEVNG BACU010650/1-1421 TKPSREAPLP FILLGGSEKG FGIFVDSVDS GSKATEAGLK RGDQILEVNG bmy_09662T0/1-1337 TKPSREAPLP FILLGGSEKG FGIFVDSVDS GSKATEAGLK RGDQILEVNG ENSBTAP00000029739/1-1486 TKPAREAPLP FILLGGSEKG FGIFVDSVDS ASKATEAGLK RGDQILEVNG 451 500 ENSTTRP00000015072/1-1495 QNFENIQLSK AMEILRNNTH LSITVKTNLF VFKELLTRLS EEKRNGAPHL ENSP00000264431/1-1499 QNFENIQLSK AMEILRNNTH LSITVKTNLF VFKELLTRLS EEKRNGAPHL BACU010650/1-1421 QNFENIQLSK AMEILRNNTH LSITVKTNLF VFKELLTRLS EEKRNGAPHL bmy_09662T0/1-1337 QNFENIQLSK AMEILRNNTH LSITVKTNLF VFKELLTRLS EEKRNGAPHL ENSBTAP00000029739/1-1486 QNFENIQLSK AMEILRNNTH LSITVKTNLF VFKELLTRLS EEKRNGAPHL 501 550 ENSTTRP00000015072/1-1495 PKIGDIKKAS RYSIPDLAVD VEQVIGLEKV NKKSKANTVG GRNKLKKILD ENSP00000264431/1-1499 PKIGDIKKAS RYSIPDLAVD VEQVIGLEKV NKKSKANTVG GRNKLKKILD BACU010650/1-1421 PKIGDIKKAS RYSIPDLAVD VEQVIGLEKV NKKSKANTVG GRNKLKKILD bmy_09662T0/1-1337 PKIGDIKKAS RYSIPDLAVD VEQVIGLEKV NKKSKANTVG GRNKLKKILD ENSBTAP00000029739/1-1486 PKIGDIKKAS RYSIPDLAVD VEQVIGLEKV NKKSKANTVG GRNKLKKILD 551 600 ENSTTRP00000015072/1-1495 KTRISILPQK PYNDIGIGQS QDDSIVGLRQ TKHIPTALPV SGTLSSSNPD ENSP00000264431/1-1499 KTRISILPQK PYNDIGIGQS QDDSIVGLRQ TKHIPTALPV SGTLSSSNPD BACU010650/1-1421 KTRISILPQK PYNDIGIGQS QDDSMVGLRQ TKHIPTALPV SGTLSSSNPD bmy_09662T0/1-1337 KTRISILPQK PYNDIGIGQS QDDSIVGLRQ TKHIPTALPV SGTLSSSNPD ENSBTAP00000029739/1-1486 KTRISILPQK PYNDIGIGQS QDDSIVGLRQ TKHIPTALPV SGTLSSSNPD 601 650 ENSTTRP00000015072/1-1495 LLQSHHRILD FSATPDLPDQ VLRVFKADQQ SRYIMISKDT TAKEVVIQAI ENSP00000264431/1-1499 LLQSHHRILD FSATPDLPDQ VLRVFKADQQ SRYIMISKDT TAKEVVIQAI BACU010650/1-1421 LLQSHHRILD FSATPDLPDQ VLRVFKADQQ SRYIMISKDT TAKEVVIQAI bmy_09662T0/1-1337 LLQSHHRILD FSATPDLPDQ VLRVFKADQQ SRYIMISKDT TAKEVVIQAI ENSBTAP00000029739/1-1486 LLQSHHRILD FSATPDLPDQ VLRVFKADQQ SRYIMISKDT TAKEVVVQAI 651 700 ENSTTRP00000015072/1-1495 REFAVTTTPD QYSLCEVSVT PEGVIKQRRL PDQLSKLADR IQLSGRYYLK ENSP00000264431/1-1499 REFAVTATPD QYSLCEVSVT PEGVIKQRRL PDQLSKLADR IQLSGRYYLK BACU010650/1-1421 REFAVTATPD QYALCEVSVT PEGVIKQRRL PDQLSKLADR IQLSGRYYLK bmy_09662T0/1-1337 REFAVTTTPD QYSLCEVSVT PEGVIKQRRL PDQLSKLADR IQLSGRYYLK ENSBTAP00000029739/1-1486 REFAVTATPD QYSLCEVSVT PEGVIKQRRL PDQLSKLADR IQLSGRYYLK 701 750 ENSTTRP00000015072/1-1495 NNMETETLCS DEDAQELLRE SQISLLQLST VEVATQLSMR NFELFRNIEP ENSP00000264431/1-1499 NNMETETLCS DEDAQELLRE SQISLLQLST VEVATQLSMR NFELFRNIEP BACU010650/1-1421 NNMETETLCS DEDAQELLRE SQISLLQLST VEAATQLSMR NFELFRNVEP bmy_09662T0/1-1337 NNMETETLCS DEDAQELLRE SQISLLQLST VEVATQLSMR NFELFRNIEP ENSBTAP00000029739/1-1486 NNMETETLCS DEDAQELLRE SQISLLQLST VEVATQLSMR NFELFRNIEP 751 800 ENSTTRP00000015072/1-1495 TEYIDDLFKL RSKTSCANLK KFEEVINQET FWVASEILRE TNQLKRMKTI ENSP00000264431/1-1499 TEYIDDLFKL RSKTSCANLK RFEEVINQET FWVASEILRE TNQLKRMKII BACU010650/1-1421 TEYIDDLFKL RSKTSCANLK KFEEVINQET FWVASEILRE TNQLKRMKII bmy_09662T0/1-1337 TEYIDDLFKL KSKTSCANLK KFEEVINQET FWVASEILRE TNQLKRMKII ENSBTAP00000029739/1-1486 TEYIDDLFKL KSKTSCANLK TFEEVINQET FWVASEILRE TNQLKRMKII 801 850 ENSTTRP00000015072/1-1495 KHFIKIALHC RECKNFNSMF AIISGLNLAP VARLRTTWEK LPNKYEKLFQ ENSP00000264431/1-1499 KHFIKIALHC RECKNFNSMF AIISGLNLAP VARLRTTWEK LPNKYEKLFQ BACU010650/1-1421 KHFIKIALHC RECKNFNSMF AIISGLNLAP VARLRTTWEK LPNKYEKLFQ bmy_09662T0/1-1337 KHFIKIALHC RECKNFNSMF AIISGLNLAP VARLRTTWEK LPNKYEKLFQ ENSBTAP00000029739/1-1486 KHFIKIALHC RECKNFNSMF AIISGLNLAP VARLRTTWEK LPNKYEKLFQ 851 900 ENSTTRP00000015072/1-1495 DLQDLFDPSR NMAKYRNVLN SQNLQPPIIP LFPVIKKDLT FLHEGNDSKV ENSP00000264431/1-1499 DLQDLFDPSR NMAKYRNVLN SQNLQPPIIP LFPVIKKDLT FLHEGNDSKV BACU010650/1-1421 DLQDLFDPSR NMAKYRNVLN SQNLQPPIIP LFPVIKKDLT FLHEGNDSKV bmy_09662T0/1-1337 DLQDLFDPSR NMAKYRNVLN SQNLQPPIIP LFPVIKKDLT FLHEGNDSKV ENSBTAP00000029739/1-1486 DLQDLFDPSR NMAKYRNVLN SQNLQPPIIP LFPVIKKDLT FLHEGNDSKV 901 950 ENSTTRP00000015072/1-1495 DGLVNFEKLR MIAKEIRHVG RMASVNMDPA LMFRTRKKKW RSLGSLSQGS ENSP00000264431/1-1499 DGLVNFEKLR MIAKEIRHVG RMASVNMDPA LMFRTRKKKW RSLGSLSQGS BACU010650/1-1421 DGLVNFEKLR MIAKEIRHVG RMASVNMDPA LMFRTR---- ----SLSQGS bmy_09662T0/1-1337 DGLVNFEKLR MIAKEIRHVG RMASVNMDPA LMFRTR---- ----SLSQGS ENSBTAP00000029739/1-1486 DGLVNFEKLR MIAKEIRHVG RMASVNMDPA LMFRTRKKKW RSLGSLSQGS 951 1000 ENSTTRP00000015072/1-1495 TNATVLDVAQ TGGHKKRVRR SSFLNAKKLY EDAQMARKVK QYLSNLELEM ENSP00000264431/1-1499 TNATVLDVAQ TGGHKKRVRR SSFLNAKKLY EDAQMARKVK QYLSNLELEM BACU010650/1-1421 TNATVLDVAQ TGGHKKRVRR SSFLNAKKLY EDAQMARKVK QYLSNLELEM bmy_09662T0/1-1337 TNATVLDVAQ TGGHKKRVRR SSFLNAKKLY EDAQMARKVK QYLSNLELEM ENSBTAP00000029739/1-1486 TNATVLDVAQ TGGHKKRVRR SSFLNAKKLY EDAQMARKVK QYLSNLELEM 1001 1050 ENSTTRP00000015072/1-1495 DEESLQTLSL QCEPATNTLP KNPGDRKPVK ADTSPVAPRA GLQPK--PPP ENSP00000264431/1-1499 DEESLQTLSL QCEPATNTLP KNPGDKKPVK SETSPVAPRA GSQQKAQSLP BACU010650/1-1421 DEESLQTLSL QCEPATNTLP KNPGDRKPVK ADTSPVAPRA GLQPK--PPP bmy_09662T0/1-1337 DEESLQTLSL HCEPATNTLP KNPGDRKPVK ADTSPVAPRA GLQPK--PPP ENSBTAP00000029739/1-1486 DEESLQTLSL QCEPATNTLP KNPTDKKPVK SETSPVAPRA GLQPKAQPQP 1051 1100 ENSTTRP00000015072/1-1495 QA---PQPSQ RPSPGLQLPA VPLYPSRKKV PLRDLPPF-- ---------- ENSP00000264431/1-1499 QPQQQPPPAH KINQGLQVPA VSLYPSRKKV PVKDLPPF-- ---------- BACU010650/1-1421 PA---PQPSQ RPGPGQLLPA VPLYPSRKKV PLRDLPPFVF PDRLFVSSSL bmy_09662T0/1-1337 QA---PQPSQ RPSPGLQLPA VPLYPSRKKV PLRDLPPF-- ---------- ENSBTAP00000029739/1-1486 QP---PQPPH KLNQGLQVPA VSLYPSRKKV PVKDLPPF-- ---------- 1101 1150 ENSTTRP00000015072/1-1495 ---------- ---------- ---------- ---------- GINSPQALKK ENSP00000264431/1-1499 ---------- ---------- ---------- ---------- GINSPQALKK BACU010650/1-1421 SDVLLKRVVV KVWNPEWNNS SSLSSPRQVS ADTRRAPCAP CINSPQALKK bmy_09662T0/1-1337 ---------- ---------- ---------- ---------- GINSPQALKK ENSBTAP00000029739/1-1486 ---------- ---------- ---------- ---------- GINSPQALKK 1151 1200 ENSTTRP00000015072/1-1495 ILALSEEGSL ERHKRPAEDT VSDASSRFSS PPTSPQSSPR KGYTLAPSGT ENSP00000264431/1-1499 ILSLSEEGSL ERHKKQAEDT ISNASSQLSS PPTSPQSSPR KGYTLAPSGT BACU010650/1-1421 ILALSEEGSL ERHKRPAEDT ISNASSQLSS PPTSPQSSPR KAQS------ bmy_09662T0/1-1337 ILALSEEGSL ERHKRPAEDT ISNASSQLSS PPTSPQSSPR KGYTLAPSGT ENSBTAP00000029739/1-1486 ILSLSEEGSL ERHRRPAEDT ISNTSSQLSS PPTSPQSSPR KGYTLAPSGT 1201 1250 ENSTTRP00000015072/1-1495 VDNFSDSGHS EISSRSSIVS NSSFDSLPVS LPDERRQRPS VGTVETSLAA ENSP00000264431/1-1499 VDNFSDSGHS EISSRSSIVS NSSFDSVPVS LHDERRQRHS VSIVETNLGM BACU010650/1-1421 ---------- ---------- -------PRR VFSPQFRGGT CGLRSGFAST bmy_09662T0/1-1337 VDNFSDSGHS EISSRSSIVS NSSFDSLPVS LPDERRQRPS VGIVETSLAA ENSBTAP00000029739/1-1486 VDNFSDSGHS EISSRSSIVS NSSFDSLPVS LPDERRQRPS VSIVETSLAS 1251 1300 ENSTTRP00000015072/1-1495 GRPERRPAGE PDQCSLGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264431/1-1499 GRMERRTMIE PDQYSLGSYA PMSEGRGLYA TATVISSPST EELSQDQGDR BACU010650/1-1421 GRRQR----- -DAVHPRSCA PLSESRGLYA AATVISSPST EELSQDQGDR bmy_09662T0/1-1337 GRLERRPAGE PDQCSLGSCA PLSESRGLYA AATVISSPST EELSQDQGDR ENSBTAP00000029739/1-1486 GRLERRPAVE PDQYSLGSCA PLSESRGLYA AATVISSPST EELSQDQGDR 1301 1350 ENSTTRP00000015072/1-1495 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264431/1-1499 ASLDAADSGR GSWTSCSSGS HDNIQTIQHQ RSWETLPFGH THFDYSGDPA BACU010650/1-1421 ASLDAADSGR GSWTSCSSGS HDNIQTIQHQ RSWETLPFGH THFDHSGDAA bmy_09662T0/1-1337 ASLDAADSGR GSWTSCSSGS HDNIQTIQHQ RSWETLPFGH THFDYSGDAA ENSBTAP00000029739/1-1486 ASLDAADSGR GSWTSCSSGS HDNIQTIQHQ RSWETLPFGH THFDYPGDAA 1351 1400 ENSTTRP00000015072/1-1495 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK SLDQAQSRAS WASSTGYWGE ENSP00000264431/1-1499 GLWASS-SHM DQIMFSDHST KYNRQNQSRE SLEQAQSRAS WASSTGYWGE BACU010650/1-1421 GFWASS-SHV DQIMFSDHST KYNRQSQSRE SLDQAQSRAS WASSTGYWGE bmy_09662T0/1-1337 GLWASS-SHV DQIMFSDHST KYNRQSQSRE SLDQAQSRAS WASSTGYWGE ENSBTAP00000029739/1-1486 GLWASS-SHM DQIMFPDHSA KYSRQSQSRE SLDQAQSRAS WASSTGYWGE 1401 1450 ENSTTRP00000015072/1-1495 DSEGDTGTIK RRGGKDVSLE AESSSMMSAS AEEAKPVAMA AHVAVPPSAT ENSP00000264431/1-1499 DSEGDTGTIK RRGGKDVSIE AESSSLTSVT TEETKPVPMP AHIAVASSTT BACU010650/1-1421 DSEGDTGTIK RRGGKDVSLE AESSSMMPAT AEEAKPVAMA AHVAVPPSAT bmy_09662T0/1-1337 DSEGDTGTIK RRGGKDVSLE AESSSMMSAT AEEAKPVAMA AHVAVPPSAT ENSBTAP00000029739/1-1486 DSEGDTGTIK RRGGKDVSLD ADSSSMTAVT AEEAKPAAMA AHIAVTPSAA 1451 1500 ENSTTRP00000015072/1-1495 KGLIXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264431/1-1499 KGLIARKEGR YREPPPTPPG YIGIPITDFP EGHSHPARKP PDYNVALQRS BACU010650/1-1421 KGLIGK---- ---------C FCARQIPSAQ DRTRRRVQEK MNKCLRFEAR bmy_09662T0/1-1337 KGLIGK---- ---------- ---------- ---------- ---------- ENSBTAP00000029739/1-1486 KGLIARKEGR YREPPPTPPG YVGIPITDFP EAHPHPARKP PDYTVALQRS 1501 1550 ENSTTRP00000015072/1-1495 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-------- ENSP00000264431/1-1499 RMVARSSDTA GPSSVQQPHG HPTSSRPVNK PQWHKPNESD PR-------- BACU010650/1-1421 ACLRPCRPPT GEH------- ---RRRPLAS EPWDSHSEDG GPVCLLPCLK bmy_09662T0/1-1337 ---------- ---------- ---------- -----LTAGS GM-------- ENSBTAP00000029739/1-1486 RMLARPAEPP APG------- ---SARPAPR PQWHRPGDGD PR-------- 1551 1600 ENSTTRP00000015072/1-1495 -----XXXXX XXXXXXXXXX DEQVSAV--- - ENSP00000264431/1-1499 -----LAPYQ SQGFSTEEDE DEQVSAV--- - BACU010650/1-1421 SSVGLLPPFF LSPLHVKYCE ETALALFRLV A bmy_09662T0/1-1337 -----SGSWL HPDLFQK--- ---------- - ENSBTAP00000029739/1-1486 -----AGPCA PPGLTAEEDE DEQVSAV--- -