KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:58 2014 Check: 00 .. Name: bmy_13884T0/1-330 Len: 580 Check: 1769 Weight: 1.00 Name: ENSP00000339495/1-580 Len: 580 Check: 9833 Weight: 1.00 Name: ENSTTRP00000014562/1-580 Len: 580 Check: 3711 Weight: 1.00 Name: ENSBTAP00000029144/1-580 Len: 580 Check: 3600 Weight: 1.00 // 1 50 bmy_13884T0/1-330 ---------- ---------- ---------- ---------- ---------- ENSP00000339495/1-580 MFAGLQDLGV ANGEDLKETL TNCTEPLKAI EQFQTENGVL LPSLQSALPF ENSTTRP00000014562/1-580 MFAGLQDLGV ANGEDMKETL TNCTEPLKAI EQFQTENGVL LPSLQSALPF ENSBTAP00000029144/1-580 LFAGLQDLGV ANGEDLKETL TNCTEPLKAI EQFQTENGVL LPSLQSALPF 51 100 bmy_13884T0/1-330 ---------- ---------- ---------- ---------- ---------- ENSP00000339495/1-580 LDLHGTPRLE FHQSVFDELR DKLLERVSAI ASEGKAEERY KKLEDLLEKS ENSTTRP00000014562/1-580 LDLHGTPRLE FHQSVFDELR DKLLERVSAI ATEGKAEERY KKLEDLLEKS ENSBTAP00000029144/1-580 LDLHGTPRLE FHQSVFDELR DKLLERVSAI ASEGKAEERY KKLEDLLEKS 101 150 bmy_13884T0/1-330 ---------- ---------- ---------- ---------- ---------- ENSP00000339495/1-580 FSLVKMPSLQ PVVMCVMKHL PKVPEKKLKL VMADKELYRA CAVEVKRQIW ENSTTRP00000014562/1-580 FSLVKMPSLQ PVVMCVMKHL PKVPEKKLKL VMADKELYRA CAVEVKRQIW ENSBTAP00000029144/1-580 FSLVKMPSLQ PVVMCVMKHL PKVPEKKLKL VMADKELYRA CAVEVKRQIW 151 200 bmy_13884T0/1-330 ---------- ---------- ---------- ---------- ---------- ENSP00000339495/1-580 QDNQALFGDE VSPLLKQYIL EKESALFSTE LSVLHNFFSP SPKTRRQGEV ENSTTRP00000014562/1-580 QDNQALFGDE VSPLLKQYIV EKESALFSTE LSVLHNFFSP SPKTRRQGEV ENSBTAP00000029144/1-580 QDNQALFGDE VSPLLKQYIV EKESALFSTE LSVLHNFFSP SPKTRRQGEV 201 250 bmy_13884T0/1-330 ------MVGR NVKLYDMVLQ FLRTLFLRTR NVHYCTLRAE LLMSLHDLDV ENSP00000339495/1-580 VQRLTRMVGK NVKLYDMVLQ FLRTLFLRTR NVHYCTLRAE LLMSLHDLDV ENSTTRP00000014562/1-580 VQRLTRMVGR NVKLYDMVLQ FLRTLFLRTR NVHYCTLRAE LLMSLHDLDV ENSBTAP00000029144/1-580 VQRLTRMVGR NVKLYDMVLQ FLRTLFLRTR NVHYCTLRAE LLMSLHDLDV 251 300 bmy_13884T0/1-330 GDVCSVDPCH KFTWCLDACI RERFVDSKRA RELQGFLDGV KKGQEQVLGD ENSP00000339495/1-580 GEICTVDPCH KFTWCLDACI RERFVDSKRA RELQGFLDGV KKGQEQVLGD ENSTTRP00000014562/1-580 GDICSVDPCH KFTWCLDACI RERFVDSKRA RELQGFLDGV KKGQEQVLGD ENSBTAP00000029144/1-580 GDICSVDPCH KFTWCLDACI RERFVDSKRA RELQGFLDGV KKGQEQVLGD 301 350 bmy_13884T0/1-330 LSMILCDPFA INTLSLSTVR HLQELVGQEL LPRDSPDLLL LLRLLALGQG ENSP00000339495/1-580 LSMILCDPFA INTLALSTVR HLQELVGQET LPRDSPDLLL LLRLLALGQG ENSTTRP00000014562/1-580 LSMILCDPFA INTLSLSTVR HLQELVGQEL LPRDSPDLLL LLRLLALGQG ENSBTAP00000029144/1-580 LSMILCDPFA INTLSLSTVR HLQELVGQEV LPRDSPDLLL LLRLLALGQG 351 400 bmy_13884T0/1-330 AWDMIDSQVF KEPKMEVELV TRFLPTLMSF VVDDHTFNVD QKLPAEEKAP ENSP00000339495/1-580 AWDMIDSQVF KEPKMEVELI TRFLPMLMSF LVDDYTFNVD QKLPAEEKAP ENSTTRP00000014562/1-580 AWDMIDSQVF KEPKMEVELV TRFLPTLMSF VVDDHAFNVD QKLPAEEKAP ENSBTAP00000029144/1-580 AWDMIDSQVF KEPKMEVELV TRFLPMLMSF VVDDHTFNVD QKLPAEEKAP 401 450 bmy_13884T0/1-330 VAYPSTLPES FTKFLQEQRM ACEVGLYYVL HITKQRNKNA LLRLLPGLGE ENSP00000339495/1-580 VSYPNTLPES FTKFLQEQRM ACEVGLYYVL HITKQRNKNA LLRLLPGLVE ENSTTRP00000014562/1-580 VSYPSALPET FTKFLQEQRV ACEVGLYYVL HITKQRNKNA LLRLLPGLVE ENSBTAP00000029144/1-580 VTYPNTLPES FTKFLQEQRM ACEVGLYYVL HITKQRNKNA LLRLLPGLVE 451 500 bmy_13884T0/1-330 SWGRRG-SAV FAH---GRPR L--------- ---------- ---SPQPTFA ENSP00000339495/1-580 TFGDLAFGDI FLHLLTGNLA LLADEFALED FCSSLFDGFF LTASPRKENV ENSTTRP00000014562/1-580 TFSDLAFGDI FLHLLTGNLA LLADEFALED FCSSLFDGFL LTASPRKENV ENSBTAP00000029144/1-580 TFGDLAFGDI FLHLLTGSLA LLADEFALED FCSSLFDGFL LTASPRKESV 501 550 bmy_13884T0/1-330 KSH-LNLFLR GERCGAPQVL RPLREPPLHG GEEAASPREP CSAWGSGCKP ENSP00000339495/1-580 HRHALRLLIH LHPRVAPSKL EALQKALEPT GQSGEAVKEL YSQLGEKLEQ ENSTTRP00000014562/1-580 QRHVLRLLLH LHHRVAPSKL EALQKALEPT GQSGEAVKEL YSQLGEKLEQ ENSBTAP00000029144/1-580 QRHVLRLLLH LHHRVAPSKL EALQKALEPT GQSGEAVKEL YSQLGEKLEQ 551 600 bmy_13884T0/1-330 GRRGR----- -----DLSGP LQG------- ENSP00000339495/1-580 LDHRKPSPAQ AAETPALELP LPSVPAPAPL ENSTTRP00000014562/1-580 LDRRKPSPAQ ATETPALELP LPSVPAPAVL ENSBTAP00000029144/1-580 LDHRKPSPAQ APETPALELP LPAVPAPAVL