KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:55 2014 Check: 00 .. Name: ENSP00000298999/1-778 Len: 800 Check: 1789 Weight: 1.00 Name: ENSBTAP00000029136/1-786 Len: 800 Check: 8811 Weight: 1.00 Name: bmy_20144T0/1-606 Len: 800 Check: 8346 Weight: 1.00 Name: ENSTTRP00000005558/1-649 Len: 800 Check: 6645 Weight: 1.00 // 1 50 ENSP00000298999/1-778 MQQESERCRV RARRPDMALY VPKARRGAVL LKTGDEEESC GSPNSVVKEK ENSBTAP00000029136/1-786 MQQEAERCRV RARRPDMALY VPKARRGIVL LKSGDEGRSC GPPNSVAKGE bmy_20144T0/1-606 MQQEAERCRV RVRRPDMALY VPKARRGIVV HKSGEEGKSC GPPNSMVKEE ENSTTRP00000005558/1-649 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000298999/1-778 QKESSLSQKE VFKDKPEARR LNINPDRKEH NCREEKKSST KLRMDTCLQ- ENSBTAP00000029136/1-786 QREDSLSQKE IFRDKCETPR LSINSDKKEH SRREGKKSST KFKKDTCLQE bmy_20144T0/1-606 QKEDSFSQKE IIREKPEAQR LSINPDKKEH NRREGKKAST KFNKDAWLQE ENSTTRP00000005558/1-649 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000298999/1-778 -KTNRVCSKR GTTESKEVLS QGQQQGAPNA GVITNAPLQR HFKPKKVECL ENSBTAP00000029136/1-786 RKKDRVCTKR ATAESKEVLS QGHQQRVLNT GVVPSIPLQR HFKPKKVECL bmy_20144T0/1-606 RNKDNVCTKR ATTESKKVLS QGHQQRVPNP GIIPIVPLQR HFKPKKIECL ENSTTRP00000005558/1-649 ---------- ---------- ---------- ------PLQR HFKPKKVECL 151 200 ENSP00000298999/1-778 EVETTDVTGH ERILLSQACL EISEAQVPSK PFQNVEFCDF SRHEPDGEAF ENSBTAP00000029136/1-786 EVETRDVVGH DGLLLSQSCS EISKAWVPNK PSTNVEISDI KRNELNGEIF bmy_20144T0/1-606 EVETRDVTEQ DGLLQSQSCS EISKAQVPNK PFQNVEFCDF NRHELNGETF ENSTTRP00000005558/1-649 EVETRDVTEQ DGLLQSQSCS EISKAQVPNK PFQNVEFCDF NRHELNGETF 201 250 ENSP00000298999/1-778 EDKDLEGRIE TDTKVLEILY EFPRVFSSVM KPENMIVPIK LSSDSEIVQQ ENSBTAP00000029136/1-786 EDTNLENRME TDAKIMKILS QFPGDFNSVV KPESVISPVK QNSDSGIVQR bmy_20144T0/1-606 EDRNLESRME TDARVAEILS QFPGDFSSVV KPESMIAPVQ PSSDSGIVQQ ENSTTRP00000005558/1-649 EDRNLESRME TDARVAEILS QFPGDFSSVV KPESMIAPVN PSSDSGIVQQ 251 300 ENSP00000298999/1-778 SMQTSDGILN PSSGGITTTS VPGSPDGVFD QTCVDFEVES VGGIANSTGF ENSBTAP00000029136/1-786 GMQTLGGMLK HSNGAITTDS VPGSSDGIIG QTHIDLDAEN VGDTANRTDS bmy_20144T0/1-606 GMQTSGGMLK RSNGSITTDS VPGSPVGIID QTCIDLDAEN VGDTDNSTDF ENSTTRP00000005558/1-649 GMQTSGGMLK RSNGGITTDS VPGSPVGIID QTCIDLDAEN VGDTANSTDF 301 350 ENSP00000298999/1-778 ILDQKDTDSI PATMGHI--- ----SLSEST NDTVSPVMIR ECEKNDSTAD ENSBTAP00000029136/1-786 VSSQKGMDSI PETVGHLSHQ MTMSSKLESA NDISDPTTIR ECEENDNTAD bmy_20144T0/1-606 ILGQKGIDSI PETMGHISHL MTIVSKLEST NDIFDPTMIR ECEENDSTAD ENSTTRP00000005558/1-649 ILGQKGIDSI PETMGHI--- ----SQLESI NGIFDPTMIR ECEENDSTAD 351 400 ENSP00000298999/1-778 ELHVKHEPPD TAVLAHETHR DSGFKNVGDI TNKACMMDTT GMSCSDHVTV ENSBTAP00000029136/1-786 ELSVKHESSD TAALAHETCT DNESESVCDI TSKTCTMDIT H-TISDQITV bmy_20144T0/1-606 ELCVKRESSD TAVLAHETYT NSGSKSVGDI TNKTCMMDIT D-TITDQIT- ENSTTRP00000005558/1-649 ELCVKCESSD TAVLAHETYT NNGSKSVGDI TNKTCMMDIT D---YDQIT- 401 450 ENSP00000298999/1-778 DSPYVVAVRI ADETSINTRS FSKFVGMSAD ATPLHVARSG NDTEDFSNPS ENSBTAP00000029136/1-786 GSPCVVEVRV ADEACSNTGS FSDCLEMNAD TALLHAAKSG NDTENFSDLT bmy_20144T0/1-606 ----VVAVRV AHEACSNTSS FSDYLEMTAD TAPLHVAKRG NDTEHFSNLT ENSTTRP00000005558/1-649 ----VVAVRV AHEACSNTSS FSDYFEISAD TSPLHVAKRG NDTEHFSNLT 451 500 ENSP00000298999/1-778 ACSDIYGESI SSHFTESTGK LIESLSDCAS SLPIKKIAGS NYNTFLDSEL ENSBTAP00000029136/1-786 ACSDVYAESI SSSFTESTGK LIESLSDCAS SLPIKKITGS NCNTFLDSEP bmy_20144T0/1-606 ACSDIYAESI SSSFTESTGK LIESLSDCAS SLPIKKIAGS NCNTFLDSEL ENSTTRP00000005558/1-649 ACSDIYAESV SSSFTESTGK LIESLSDCAS SLPVKKIAGS NCNTFLDSEL 501 550 ENSP00000298999/1-778 SMLNGTKVLS DSAVGIDLGS TGDTTEALHE LRTAEEFKTE EQDDSGSIEF ENSBTAP00000029136/1-786 SMLNGTNVFS DGALGSDLDG TGDITEALHE LKTAEEFKTK EDGDSENVEF bmy_20144T0/1-606 SMLNGTKVFS DGALGSDQDC TGDITEALHE LKTAEEFKTK EEDGSKTIEF ENSTTRP00000005558/1-649 SMLSGTKVFS DSALGSDQDC TGDITEALHE LKTAEEFKTK EEDGSETTEF 551 600 ENSP00000298999/1-778 GVSFPDRESS SMETSIEPKA TETSHTEGIT AIEESWESMF NDDGDCLDPR ENSBTAP00000029136/1-786 GVSFPDIESV SKETSVEPKA TDISHTERSA TTEESWESMF NDDGECLDPR bmy_20144T0/1-606 GVTFPDTESV SVETSMELKA TDTSHTEASA AAEESWESMF NDDGDCLDPR ENSTTRP00000005558/1-649 GVTFPDIESV SVETSMESKA TDMSHTEASA ATEESWESMF NDDGDCLDPR 601 650 ENSP00000298999/1-778 LLQE------ -------LSG NTKSRESIQE PRSDYYNHEV PDIDLSDCEF ENSBTAP00000029136/1-786 LLQE------ -------LSG NMKNRESIQE PRFDYYNHEV PDIDLSDCEF bmy_20144T0/1-606 LLQE------ ---------- ---------- ---------- ---------- ENSTTRP00000005558/1-649 LLQEVILMHI KENHSSKLSG NMKNRESIQE PIFDYYNHEF PDIDLSDCEF 651 700 ENSP00000298999/1-778 PHVIEIYDFP QEFHTEDLLR VFCSYQKKGF DIKWVDDTHA LGVFSSPITA ENSBTAP00000029136/1-786 PHVIEIYDFP QEFRTEDLLR IFCTYQKKGF DIKWVDDTHA LGVFSSPITA bmy_20144T0/1-606 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005558/1-649 PHVIEIYDFP QEFRTEDLLR IFCTYQKKGF DIKWVDDTHA LGVFSSPITA 701 750 ENSP00000298999/1-778 RDALGIKHTM VKIRPLSQAT RAAKAKARAY AEFLQPAKER PETSAALARR ENSBTAP00000029136/1-786 RDALGSKHTM VKIRPLSQAT RAAKAKARAY AEFLQPAKER PETSAALARR bmy_20144T0/1-606 ---------- ---------- ------KRNY ---------- ---------- ENSTTRP00000005558/1-649 RDALGSKHTM VKIRPLSQAT RAAKAKARAY AEFLQPAKER PETSAALARR 751 800 ENSP00000298999/1-778 LVISALGVRS KQSKTEREAE LKKLQEARER KRLEAKQRED IWEGRDQSTV ENSBTAP00000029136/1-786 LVISALGVRS KQSKTEREAE LKKLREARER KRLEARQREA IWEGRDQSAV bmy_20144T0/1-606 ---------- ---------- ---------- ---------- ---GSDQ--- ENSTTRP00000005558/1-649 LVISALGVRS KQSKTEREAE LKKLQEARXX XXXXXXQRED IWEGRDQSAV