KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:41 2014 Check: 00 .. Name: BACU018759/1-255 Len: 256 Check: 146 Weight: 1.00 Name: ENSTTRP00000003248/1-252 Len: 256 Check: 4558 Weight: 1.00 Name: ENSP00000369963/1-165 Len: 256 Check: 3488 Weight: 1.00 Name: bmy_07657T0/1-166 Len: 256 Check: 4538 Weight: 1.00 Name: ENSBTAP00000029079/1-165 Len: 256 Check: 1718 Weight: 1.00 // 1 50 BACU018759/1-255 VTRLCLPRPE ALAYPIPVPS RGVGAGEGSG SPVGPCVSSW GPSQAQVLDS ENSTTRP00000003248/1-252 MTRLCLPRPE ALAYPVPVLP -GVG-GEGSG SPVGPCVSPW GPSQAQVLDS ENSP00000369963/1-165 MTRLCLPRPE AREDPIPVPP RGLGAGEGSG SPVRPPVSTW GPSWAQLLDS bmy_07657T0/1-166 MTRLCLPRPE ALAYPIPVPS RGVGAGEGSG SPVGPCVSSW GPSQAQVLDS ENSBTAP00000029079/1-165 MTHLCLPRPE AAVSPTPGPP RGMGAGEGSA SPVGPCVSPW GPSWAQVLDS 51 100 BACU018759/1-255 VLGLGALGLT IRAVFSTAGP A-SLLLLLVS FLAFDLLHRC TSSDAAAASG ENSTTRP00000003248/1-252 VLGLGALGLT VRAVFSTAGS A-SLLLLLVS LLAFDLLHWC TRGDAAAASG ENSP00000369963/1-165 VLWLGALGLT IQAVFSTTGP A--LLLLLVS FLTFDLLHR- ---------- bmy_07657T0/1-166 VLGLGALGLT IRAVFSTAGP A-SLLLLLVS FLAFDLLHR- ---------- ENSBTAP00000029079/1-165 VLGLGALGLT IWAIFSTTGP ALLLLLLLVS FLAFDMLHR- ---------- 101 150 BACU018759/1-255 DTCHRGWRGA TACGALVGLG HAGGLGALVH VPCAPKLDPV VDHIRLAATA ENSTTRP00000003248/1-252 DACHRGW-GA TACSALVGLG HVGGLGALVR VPCAPKLDTV VDHIRLAATA ENSP00000369963/1-165 ---------- ---------- ---------- -PAGHTLPQR KLLTRGQSQG bmy_07657T0/1-166 ---------- ---------- ---------- -PAGPTWPQH THLTGGQSQG ENSBTAP00000029079/1-165 ---------- ---------- ---------- -PAGPTWSQH THLTRGQSQG 151 200 BACU018759/1-255 AACAVGSGGD ALPPAGADAV PRALHHRLPP AELPVARGSC SVAPSAAGCP ENSTTRP00000003248/1-252 AACAVGSGGD PLPAAGADAV PRALHHRLPP AELLVARGSC SVAPSAAGCP ENSP00000369963/1-165 AGEGPGQQEA LLLQMGTVSG QLSLQDAL-- --LLLLMGLG PLL-RACGMP bmy_07657T0/1-166 AGEGPGQQEA PLLPTVAVTG RLSLQEAL-- --LLLLLGLG LLL-GARGMP ENSBTAP00000029079/1-165 AGEGPEQQEA P--PAVAVAG RLSLQEAL-- --LLLCLGAG LLL-GARGVP 201 250 BACU018759/1-255 AAGAQCPPRP AFHGLLPAAF LHTAEPRGPP HLHVSPKPCS GLGPIEGQPH ENSTTRP00000003248/1-252 AAGAQCPPRP AFHRLLPAAF LHTAEPRGPP HLHVSPKPCS GLGPIEGQRH ENSP00000369963/1-165 LT-------- ----LLGLAF ---------- --------CL ---------H bmy_07657T0/1-166 LA-------- ----LLALAF ---------- --------CL ---------H ENSBTAP00000029079/1-165 LT-------- ----LLALAF ---------- --------CL ---------H 251 300 BACU018759/1-255 PAACVC ENSTTRP00000003248/1-252 PAACVC ENSP00000369963/1-165 PWA--- bmy_07657T0/1-166 PWA--- ENSBTAP00000029079/1-165 PWT---