KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:53 2014 Check: 00 .. Name: ENSP00000360299/1-910 Len: 948 Check: 129 Weight: 1.00 Name: ENSBTAP00000028795/1-942 Len: 948 Check: 7772 Weight: 1.00 Name: ENSTTRP00000016266/1-908 Len: 948 Check: 2093 Weight: 1.00 Name: bmy_00008T0/1-565 Len: 948 Check: 8428 Weight: 1.00 Name: BACU015836/1-910 Len: 948 Check: 4551 Weight: 1.00 // 1 50 ENSP00000360299/1-910 ---------- ---------- ---------- MKVGVLWLIS FFTFTDGHGG ENSBTAP00000028795/1-942 MKFKGHPERK SQTVTPAVCV LSRTRRDQQK MRFLPLWLFS FLTITEGRDG ENSTTRP00000016266/1-908 ---------- ---------- ---------- MRVPTPWLFS FFMITEGWNG bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 ---------- ---------- ---------- MRVPTLWLFS FFMITEGWNG 51 100 ENSP00000360299/1-910 FLG-KNDGIK TKKELIVNKK KHLGPVEEYQ LLLQVTYRDS KEKRDLRNFL ENSBTAP00000028795/1-942 FLE-RDEGIK TKQELIVNKE KPLGSIQEYE LLLQVHYRNS KEKRELKEFL ENSTTRP00000016266/1-908 FLGVSDDGIK TKQELILNKK NPLGPIQEYE LLLQVAYRDS KEKRDVKNFL bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 FLG-SDDGIK TKQELILNKE KPLGPFQEYE LLLQVAYRDS KEKRDVKNFL 101 150 ENSP00000360299/1-910 KLLKPPLLWS HGLIRIIRAK ATTDCNSLNG VLQCTCEDSY TWFPPSCLDP ENSBTAP00000028795/1-942 KFCALSSFFL PEPVKIIRAK ATTYCGYQNR ALRCACEDSY SWFPPQCLDP ENSTTRP00000016266/1-908 KLLEPSLF-- -GPVKIIRAK ATTYCGIQNG VLRCACDDGY SWFPPSCLDP bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 KLLEAYPLFL PGPVKIIRAK STTYCGIQNG VLRCACDDGY SWFPPSCLDP 151 200 ENSP00000360299/1-910 QNCYLHTAGA LPSCECHLNN LSQSVNFCER TKIWGTFKIN ERFTNDLLNS ENSBTAP00000028795/1-942 QNCSLLKAGS PQTCDCHSSN LTQSVYFCER TKVWGTFKIN KKFTEDLLDS ENSTTRP00000016266/1-908 QKCYLHTEGS LQSCDCHVNN LTQSVHFCER TKVWGTSKXX XXXXXXXXXX bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 QKCYLHTEGS LQSCDCHLNN LTQSVHFCER TKVWGTFKIN ERFTKDLLDS 201 250 ENSP00000360299/1-910 SSAIYSKYAN GIEIQLKKAY ERIQGFESVQ VTQFRNGSIV AGYEVVGSSS ENSBTAP00000028795/1-942 SSAKYAKYTT GIEMQLKEAY KGIQGFESVR VIQFRDGSIV VGYEVVGSSG ENSTTRP00000016266/1-908 XXXXXXXXXX XXXXXLKEAY KSIKGFESVQ VTQFRNGSII NGYEVVGSSN bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 SSAIYSKYTT GIEIQLKEAY KSIQGFESVQ VTQFRNGSII AGYEVVGSSN 251 300 ENSP00000360299/1-910 ASELLSAIEH VAEKAKTALH KLFPLEDGSF RVFGKAQCND IVFGFGSKDD ENSBTAP00000028795/1-942 TSELLSGIEQ MVEKAKTYLR QLYTLEENSF RVFGEAQCNS IAFGFGSEND ENSTTRP00000016266/1-908 TSELLSGIGQ AAKKAKTGLH QLFPLEDNSF RVFGKAQCNS IVFGFGSKND bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 TSELLSGIEQ AAKKAKTGLH QLFPLEDNSF RVFGKAQCNS IVFGFGSKND 301 350 ENSP00000360299/1-910 EYTLPCSSGY RGNITAKCES SGWQVIRETC VLSLLEELNK NFSMIVGNAT ENSBTAP00000028795/1-942 EYTLPCSLGY IGNITVRCQP SGWHILEEMC VLSELEELKK NSRELARNST ENSTTRP00000016266/1-908 EYTLPCSSGY SGIITARCQP SGWHVLRETC VLSELEELKK NFSVIASNAT bmy_00008T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU015836/1-910 KYTLPCSSGY SGSITARCQS SGWHVLRETC VLSELEELKK DFSVIASNAT 351 400 ENSP00000360299/1-910 --EAAVSSFV QNLSVIIRQN PSTTVGNLAS VVSILSNISS LSLASHFRVS ENSBTAP00000028795/1-942 DAEAAVSSLV QKLSMVIQQS PSTTAGNLAS VVSILGNISS LR--KSFTVS ENSTTRP00000016266/1-908 --EETVSSLV QNLSMVIQQN PSTTAGNLAS VVSILGNISS LSLERHFSVS bmy_00008T0/1-565 ---------- ----MVIQEN PSTTAGNLAS VVSILGNISS LSLERHFNVS BACU015836/1-910 --EATVSSLV QNLSMVIQEN PSTTAGNLAS VVSILGNISS LSLERHFNVS 401 450 ENSP00000360299/1-910 NSTMEDVISI ADNILNSASV TNWTVLLREE KYASSRLLET LENISTLVPP ENSBTAP00000028795/1-942 NSTMENVINI ADHILNSASL TNWTVLLKKE KNASSQLLES LENISTLVPS ENSTTRP00000016266/1-908 SSTMENVISI SDHILNSTSV TNWTVLLQKE KNAGSQFLAS LENISVLVPS bmy_00008T0/1-565 ISTMQNVISI SDHILNSASV TNWTVLLQKE KNAGSQLLAS LENISVLVPS BACU015836/1-910 ISTMENVINI SDHVLNSASV TNWTVLLQKE KNAGSQLLES LENISVLVPS 451 500 ENSP00000360299/1-910 TALPLNFSRK FIDWKGIPVN KSQLKRGYSY QIKMCPQNTS IPIRGRVLIG ENSBTAP00000028795/1-942 TALPLHFSRD FINWKGIPVS ANLSNQGYNY ETEFPPQNTP SPITGHVSIG ENSTTRP00000016266/1-908 TALPLEFSQE FINWKGIPAS SNQSNLGYNY QTEMFLKNPS IPIRGHALIR bmy_00008T0/1-565 TALPLEFSRE FINWKGIPAS SNQSNLGYNY QTEMFPKNTS IPIRGHALIR BACU015836/1-910 TALPLEFSRE FINWKGIPAS SNQSNLGYNY QTEMFPENTS IPIRGHALIR 501 550 ENSP00000360299/1-910 SDQFQRSLPE TIISMASLTL GNILPVSKNG NAQVNGPVIS TVIQNYSINE ENSBTAP00000028795/1-942 PGQFKKHLPH TIISMTSLTL GNILPIAENK NAQVNGPLIS IIIPNSSIHE ENSTTRP00000016266/1-908 SDQFQESLPE TIISMTSLTL GNILPATKNG NAQVNGPVIS MVIPNYSINE bmy_00008T0/1-565 SDQFQEPLPE TIISMTSLTL GNILPVTKNG NAQVNGPLIS MVIPNYSINE BACU015836/1-910 SDQFQKPLPE TIISMTSLTL GNILPVTKNG NAQVNGPVIS MVIPNYSINE 551 600 ENSP00000360299/1-910 VFLFFSKIES NLSQPHCVFW DFSHLQWNDA GCHLVNETQD IVTCQCTHLT ENSBTAP00000028795/1-942 ISLTFSKMKL NLSQPQCVFW DFSHLQWTDT GCHLENETAN LVTCLCTHLT ENSTTRP00000016266/1-908 IFLTFSKIES NLSQPHCVFW DCNHSQWNDN GCHLVNETPD SVTCRCTHLT bmy_00008T0/1-565 IFLTFSKIES NLSQPHCVFW DFNHSQWNDN GCHLVNETPD SVTCRCTHLT BACU015836/1-910 IFLTFSKIES NLSQPHCVFW DFNHSQWNDN GCHLVNETPD LVTCRCTHLT 601 650 ENSP00000360299/1-910 SFSILMSPFV PSTIFPVVKW ITYVGLGISI GSLILCLIIE ALFWKQIKKS ENSBTAP00000028795/1-942 SYSVLMSSIV PPAIVPIVKW ITFVGLGVSI GSLILCLTIQ GLFWKQVNKN ENSTTRP00000016266/1-908 SFSVLMSPSV PPAIVPVVKW ITFVGLGVSI GSLVLCLTIE ALFWKQVSRS bmy_00008T0/1-565 SFSMLMSPSV PCATVPIVKW ITFVGLGVSI GSLILCLTIE ALFWKQVNKS BACU015836/1-910 SFSMLMSPSV PPAIVPVVKW ITFVGLGVSI GSLLLCLTIE ALFWKQVNKS 651 700 ENSP00000360299/1-910 QTSHTRRICM VNIALSLLIA DVWFIVGATV DTTVNPSGVC TAAVFFTHFF ENSBTAP00000028795/1-942 QTSHSRHICI VNIALCLLIA DVWFIVAATV DTN---SGVC TAAVFFAHLF ENSTTRP00000016266/1-908 QTSHMRHICM VNIALCLLIA DIWFIVAASV HTTANPSGVC TAAVFFTHFF bmy_00008T0/1-565 QTSHTRHICM VNIALCLLIA DIWFIVAATV DTTANPSGVC TAAVFFTHFF BACU015836/1-910 QTSHTRHICM VNIALCLLIA DIWFIVAATV DTTANPSGVC TAAVFFTHFF 701 750 ENSP00000360299/1-910 YLSLFFWMLM LGILLAYRII LVFHHMAQHL MMAVGFCLGY GCPLIISVIT ENSBTAP00000028795/1-942 YLSLFFWMLL LGFLLAYRVI FVFHHMATPL MVAVGFCLGY GCPLIISIVT ENSTTRP00000016266/1-908 YLSLFFWMLL LSFLLAYRVI LVFHHMTTPL LVAVGFCLGY GCPLIISIVT bmy_00008T0/1-565 YLSLFFWMLM LGFLLAYRVI LVFHHMATPL LVAVGFCLGY GCPLIISIIT BACU015836/1-910 YLSLFFWMLM LGFLLAYRVI LVFHHMATPL LVAVGFCLGY GCPLIISIIT 751 800 ENSP00000360299/1-910 IAVTQPSNTY KRKDVCWLNW SNGSKPLLAF VVPALAIVAV NFVVVLLVLT ENSBTAP00000028795/1-942 FLVTQPSDGY KRKDACWLNW SDGSKPLLAF AVPALTIVAV NLVVVLLVLT ENSTTRP00000016266/1-908 IAVTQPSNGY ERKDVCWLNW SDGSKPLLAF AGPALTIVAV NLVVVLLVLT bmy_00008T0/1-565 IAVTQPSNGY ERKDVCWLNW SDRSKPLLAF AGPALTIVAV NLVVVLLVLT BACU015836/1-910 IAVTQPSNGY ERKDVCWLNW SDGSKPLLAL AGPALTIVAV NLVVVLLVLT 801 850 ENSP00000360299/1-910 KLWRPTVGER LSRDDKATII RVGKSLLILT PLLGLTWGFG IGTIVDSQNL ENSBTAP00000028795/1-942 KLWRPAVGER LAQDNKATVK RIGRSLLVLT PLLGLTWGFG IVTMADGQNL ENSTTRP00000016266/1-908 KLWRPAVGER LTQDSKATVV RVGRSLLVLT PLLGLTWGFG IGTMVDSQNP bmy_00008T0/1-565 KLWRPAVGER LTQDSKATVV RMGRSLLVLT PLLGLTWGFG IGTMVDSQNQ BACU015836/1-910 RLWRPAVGER LTQDSKATVV RMGRSLLVLT PLLGLTWGFG IGTMVDSRNL 851 900 ENSP00000360299/1-910 AWHVIFALLN AFQGFFILCF GILLDSKLRQ LLFNKLSALS SWKQTEKQNS ENSBTAP00000028795/1-942 SWHVIFAFLN AFQGLFILCF GILLDSKLRQ LLLNKLSPLS CWDQTSKQKL ENSTTRP00000016266/1-908 AWHVIFASLN ASQGFFIFCF GMLLDSKLRQ LLLNKLSPLS FWNQASKQNS bmy_00008T0/1-565 AWHVIFASLN ASQ------- -------LRQ LLLNKLSPLS FWNQASKQNS BACU015836/1-910 AWHVIFASLN ASQGFFILCF GMLLDSKLRQ LLLNKLSPLS FWNQASKQNS 901 950 ENSP00000360299/1-910 SDLSAKPKFS KPFNPLQNKG HYAFSHTGDS SDNIMLTQFV SNE----- ENSBTAP00000028795/1-942 SDSSVTLRFE KPFNPFQQKG CYVFSYTSES SHDIMLTQFS SAEQSGES ENSTTRP00000016266/1-908 SDSSVKPRFK KTFNPFQHKR NYVLSYTGGS SNDITLTQFS STE----- bmy_00008T0/1-565 SDSSVQPRFK KTFNPFQHKR NYVLSYTGES SNDITLTQFS SSE----- BACU015836/1-910 SDSSVKPRFK KTFNPFQHER KYVLSYTGES SNDIMLTQFS SSE-----