KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:27 2014 Check: 00 .. Name: bmy_14096T0/1-329 Len: 582 Check: 6555 Weight: 1.00 Name: BACU004390/1-411 Len: 582 Check: 3392 Weight: 1.00 Name: ENSP00000381266/1-412 Len: 582 Check: 5237 Weight: 1.00 Name: ENSBTAP00000028643/1-414 Len: 582 Check: 5276 Weight: 1.00 Name: ENSTTRP00000009170/1-416 Len: 582 Check: 7702 Weight: 1.00 // 1 50 bmy_14096T0/1-329 MWVAALRAGT WRVLQGCRCA GMRWWCGAAA GCWLPPLRAG EGSGPGAGAK BACU004390/1-411 ---------- ---------- ----MAGSAG ---------- ---------- ENSP00000381266/1-412 ---------- ---------- ----MAGSVG ---------- ---------- ENSBTAP00000028643/1-414 ---------- ---------- ----MASSAG ---------- ---------- ENSTTRP00000009170/1-416 ---------- ---------- ----MAGSAG ---------- ---------- 51 100 bmy_14096T0/1-329 AAVARRGLET PALPHSRGCT RLGVTPGSPT ATCELSVATW ARPRACAAEC BACU004390/1-411 ---------- ---------- ---------- ---------- ---------- ENSP00000381266/1-412 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028643/1-414 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009170/1-416 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_14096T0/1-329 PLSAPFSQDP PRGPLAACPG PRALRGGSAA LFEGSARDTS GLCGVRGTLV BACU004390/1-411 ---------- ----LSLCGH ALVVRGGSRL LATSTS---- ---------- ENSP00000381266/1-412 ---------- ----LALCGQ TLVVRGGSRF LATSIA---- ---------- ENSBTAP00000028643/1-414 ---------- ----LALCGH ALVVRGGSRL LATSTS---- ---------- ENSTTRP00000009170/1-416 ---------- ----LALCGN ELVVRGGSRL LATSTS---- ---------- 151 200 bmy_14096T0/1-329 RPSLERGAES SPCFPLGRGL YSRGPSSAHS LSPLPLPADD DSLFIYDCSA BACU004390/1-411 ---------- ---------- ---------- ------SRDD DSLFIYDCSA ENSP00000381266/1-412 ---------- ---------- ---------- ------SSDD DSLFIYDCSA ENSBTAP00000028643/1-414 ---------- ---------- ---------- ------SSDG DSLFIYDCSA ENSTTRP00000009170/1-416 ---------- ---------- ---------- ------SSDD DSLFIYDCSA 201 250 bmy_14096T0/1-329 AEKETQEHKG EDGQPVDKGS DTILASTFSK SGSYFALTDD SKRLILFRTK BACU004390/1-411 AEKETQEHKG EDGQPVDKGS DTILASTFSN SGSYFALTDD SKRLILFRTK ENSP00000381266/1-412 AEKKSQENKG EDA-PLDQGS GAILASTFSK SGSYFALTDD SKRLILFRTK ENSBTAP00000028643/1-414 AEKKSQENKG EDGQPVDQGS DTVLASTFSK SGSYFVLTDD SKRLILFRTN ENSTTRP00000009170/1-416 AEKEAQEHKG EDGQPVDKGS DTVLASTFST SGSYFALTDD SKRLILFRTK 251 300 bmy_14096T0/1-329 PWQCLSVR-- ---------- ---------- ---------- ---------- BACU004390/1-411 PWQCLSVRSV VRRCTALTFT ASEEKVLVAD KSGDVYSFSV LEPHGSGKLE ENSP00000381266/1-412 PWQCLSVRTV ARRCTALTFI ASEEKVLVAD KSGDVYSFSV LEPHGCGRLE ENSBTAP00000028643/1-414 PWQCLSVRTV VRRCTALTFT ASEEKILVAD KSGDVYSFSV LEPHGGGRLE ENSTTRP00000009170/1-416 PWQCLSVRTV VRRCTALTFT ASEEKVLVAD KSGDVYSFSV LEPHGSGKLE 301 350 bmy_14096T0/1-329 ---------- ---------- ---------- ---------- ---------- BACU004390/1-411 LGHLSMLLDV AVSPDDRYVL TADRDEKIRV SWAAAPHNIE SFCLGHTEFV ENSP00000381266/1-412 LGHLSMLLDV AVSPDDRFIL TADRDEKIRV SWAAAPHSIE SFCLGHTEFV ENSBTAP00000028643/1-414 LGHLSMLLDV AVSPDDRFVL TADRDEKIRV SWAAAPHSIE SFCLGHTEFV ENSTTRP00000009170/1-416 LGHLSMLLDV AVSPDDRYVL TADRDEKIRV SWAAAPHNIE SFCLGHTEFV 351 400 bmy_14096T0/1-329 ---------- --------EG ALRF----SE RSL------- ---------- BACU004390/1-411 SRIFVVPDHP ELLLSSSGDR TLRLWQYRSG RELHCCHLPS LQEPTEPWSD ENSP00000381266/1-412 SRISVVPTQP GLLLSSSGDG TLRLWEYRSG RQLHCCHLAS LQELVDPQAP ENSBTAP00000028643/1-414 SRIFVVPNHP ELLLSSSGDC TLRLWEYRSG RELHCCPLTS LQEPTEPWSD ENSTTRP00000009170/1-416 SRIFVVPDHP ELLLSSSGDR TLRLWQYRSG RELHCCHLPS LQEPSEPWSN 401 450 bmy_14096T0/1-329 ---------- ---------- ---------- ----PESFLV FGE------- BACU004390/1-411 KRFAASRITY WRQEDCVALL CDGLPAVCLF QLDAPRRQLV FQQQLTFQHR ENSP00000381266/1-412 QKFAASRIAF WCQENCVALL CDGTPVVYIF QLDARRQQLV YRQQLAFQHQ ENSBTAP00000028643/1-414 KRFAVSRITY WSQEDCVALS CDGLPVVYIF QLDAAQRQLV PRQLLTFQHR ENSTTRP00000009170/1-416 KXXXXXXXXX XXXXXXXXXX XXXLPVVCLF QLDVPRRQLV YQQQLTFQHR 451 500 bmy_14096T0/1-329 ------EEGA G-WLYFDC-- SLTLMETPT- --WSRAGPSP PPR------- BACU004390/1-411 VWDAAFEEAQ GLWVLQDCRE APLVLCRPVG GQWQK-PVTV LLTRLSRRRA ENSP00000381266/1-412 VWDVAFEETQ GLWVLQDCQE APLVLYRPVG DQWQSVPEST VLKKVSGVLR ENSBTAP00000028643/1-414 VWDAAFEEGH GLWVLQDCRE DPLVLYRPVG GQWQSAPESA ELRRVCAHVR ENSTTRP00000009170/1-416 VWDAAFEEAR GLWVLQDCRE APLVLCRPVG GQWQSLPESA VSKRVCAHLR 501 550 bmy_14096T0/1-329 -----LPAAA GFNCPF---- ---------- ------IIRD KRVRL----- BACU004390/1-411 HSWCHGEKQV TPAEPFANLH GLDECSELPD SSLGCLYLKA SSERCRQLVP ENSP00000381266/1-412 GNWAMLEGSA GADASFSSLY K-ATFDNVTS ------YLKK KEERLQQQLE ENSBTAP00000028643/1-414 VNWAMLEGCA GVDSGFSSLY K-ATCDNMTT ------YLKK KEERLQQQLE ENSTTRP00000009170/1-416 ENWAMLEGSA GTDSGFSSLY K-ATCDNMTT ------YLKK KEERLQQQLE 551 600 bmy_14096T0/1-329 ---------- ---------- ---------- -- BACU004390/1-411 AR------LQ TPWTESRVAS RGR----CRA -- ENSP00000381266/1-412 KKQRRRSPPP GPDGHAKKMR PGEATLSC-- -- ENSBTAP00000028643/1-414 KK-RRQAPPP GPNGPTKKMR AGELAQGCSS -- ENSTTRP00000009170/1-416 KK-RRRGPPR GSNGQTKKMK AGRAPRSCSS LG