KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:14 2014 Check: 00 .. Name: ENSP00000341914/1-846 Len: 966 Check: 4005 Weight: 1.00 Name: ENSBTAP00000028550/1-904 Len: 966 Check: 7801 Weight: 1.00 Name: ENSTTRP00000003910/1-844 Len: 966 Check: 4014 Weight: 1.00 Name: bmy_00001T0/1-802 Len: 966 Check: 4404 Weight: 1.00 Name: BACU015841/1-510 Len: 966 Check: 2406 Weight: 1.00 // 1 50 ENSP00000341914/1-846 MCFLRRPGAP ASWIWWRMLR QVLRRGLQSF CHRLGLCVSR HPVFFLTVPA ENSBTAP00000028550/1-904 MCFLRRPGAP ASWIWWRMLR QVLRRGLQSF CHRLGLCVSR HPVFFLTVPA ENSTTRP00000003910/1-844 MCFLRRPGAP ASWIRWRMLR QVLRRGLQSF CHRLGSCVSR HPVFFLTVPA bmy_00001T0/1-802 MYFL------ ---------- ---------- ---------- ---------- BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000341914/1-846 VLTITFGLSA LNRFQPEGDL ERLVAPSHSL AKIERSLASS LFPLDQSKSQ ENSBTAP00000028550/1-904 VLTITFGLSA LNRFQPEGDL ERLVAPSHSL AKIERSLASS LFPLDQSKSQ ENSTTRP00000003910/1-844 VLTITFGLGA LNRFQPEGDL ERLVAPSHSL AKIERSLASS LFPLDQSKSQ bmy_00001T0/1-802 -LLITHPPGA ISTY------ ---------- ---------- ---------- BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000341914/1-846 LYSDLHTPGR YGRVILLSPT GDNILLQAEG ILQTHRAVLE M--------- ENSBTAP00000028550/1-904 LYSDLHTPGR YGRVILLSPP GDNILLQAEG ILQTHRAVLE MKVNYKGYNY ENSTTRP00000003910/1-844 LYSDLHTPGR YGRVILLSPP GDNILLQAEG ILQTHRAVLE M--------- bmy_00001T0/1-802 ---------- ---------- ---LHLQPGL ILTCREFVLR C--------- BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000341914/1-846 ---------- ---------- ---------- ---------- ---------K ENSBTAP00000028550/1-904 TFSHLCVLRN QDKKCVLDDI ISVLEDLRQA AVSNKTTARV QVRYPNTKLK ENSTTRP00000003910/1-844 ---------- ---------- ---------- ---------- ---------K bmy_00001T0/1-802 ---------- ---------- ---------- ---------- ---------P BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000341914/1-846 DGRNSFIGHQ LGGVVEVPNS KDQRVKSARA IQITYYLQTY GSATQDLIGE ENSBTAP00000028550/1-904 DGRNSFIGHQ LGGVVEVPNS KDQRVKSARA IQITYYLQTY GSATQDLIGE ENSTTRP00000003910/1-844 DGRNSFIGHQ LGGVVEVPNS KDQRVKSARA IQITYYLQTY GSATQDLIGE bmy_00001T0/1-802 DGRNSFIGHQ LGGVVEVPNS KDQRVKSARA IQITYYLQTY GSATQDLIGE BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000341914/1-846 KWENEFCKLI RKLQEEHQEL QLYSLASFSL WRDFHKTSIL ARSKVLVSLV ENSBTAP00000028550/1-904 KWENEFCKLM RKLQEEHQDL QLYSLASFSL WRDFHKSSIL ARSKVLVSLM ENSTTRP00000003910/1-844 KWENEFCKLM RKLQEEHRDL QLYSLASFSL WRDFHKTSIL SRSQVLVSLV bmy_00001T0/1-802 KWENEFCKLM RKLQEEHQDL QLYSLASFSL WRDFHKTSIL ARSKVLVSLV BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000341914/1-846 LILTTATLSS SMKDCLRSKP FLGLLGVLTV CISIITAAGI FFITDGKYNS ENSBTAP00000028550/1-904 LILTTATLSS SMKDCLRGKP FLGLLGVLTV CISIITAAGI FFITDGKYNS ENSTTRP00000003910/1-844 LILTTATLSS SM-DCLRG-P FLGXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00001T0/1-802 LILTTATLSS SMKDCLRGKP FLGLLGVLTV CISIVTXAGI FFITDGKYNS BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000341914/1-846 TLLGIPFFAM ---------- ---------- ---------- ---------- ENSBTAP00000028550/1-904 TLLGIPFFAM ---------- ---------- ---------- ---------- ENSTTRP00000003910/1-844 XXXXXXXXXX ---------- ---------- ---------- ---------- bmy_00001T0/1-802 TLLGIPFFAM DSCDAVLSSK EACVCICLAP VDTYDWKHLK CSSQLEDPCS BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000341914/1-846 ---------- ---------- --GHGTKGVF ELLSGWRRTK ENLPFKDRIA ENSBTAP00000028550/1-904 ---------- ---------- --GHGTKGVF ELLSGWRRTK ENLPFKDRVA ENSTTRP00000003910/1-844 ---------- ---------- --XHGTKGVF ELLSGWRRTK ENLPFKDRVA bmy_00001T0/1-802 IQTMEQFFKT QSPGNLPVRV CLGHGTKGVF ELLSGWRRTK ENLPFKDRVA BACU015841/1-510 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000341914/1-846 DAYSDVMVTY TMTSSLYFIT FGMGASPFTN IEAVKVFCQN MCVSILLNYF ENSBTAP00000028550/1-904 DAYSDVMVTY TMTSSLYFIT FGMGASPFTN IEAVKVFCQN MCVSILLNYF ENSTTRP00000003910/1-844 DAYSDVMVTY TMTSSLYFIT FGMGASPFTN IEAVKVFCQN MCVSILLNYF bmy_00001T0/1-802 DAYSDVMVTY TMTSSLYFIT FGMGASPFTN IEAVKVFCQN MCVSILLNYF BACU015841/1-510 ------MVTY TMTSSLYFIT FGMGASPFTN IEAVKVFCQN MCVSILLNYF 501 550 ENSP00000341914/1-846 YIFSFFGSCL VFAGQLEQNR YHSIFCCKIP SAEYLDRKPV WFQTVMSDGH ENSBTAP00000028550/1-904 YIFSFFGSCL VFAGQLEQNR YHSIFCCKIP SAEYLDRKPV WFQTVMSDGH ENSTTRP00000003910/1-844 YIFSFFGSCL VFAGQLEQNR YHSIFCCKIP SAEYLDRKPV WFQTVMSDGH bmy_00001T0/1-802 YIFSFFGSCL VFAGQLEQNR YHSIFCCKIP SAEYLDRKPV WFQTVMSDGH BACU015841/1-510 YIFSFFGSCL VFAGQLEQNR YHSIFCCKIP SAEYLDRKPV WFQTVMSDGH 551 600 ENSP00000341914/1-846 QQTSHHETNP YQHHFIQHFL REHYNEWITN IYVKPFVVIL YLIYASFSFM ENSBTAP00000028550/1-904 QQTSHHETNP YQHHFIQHFL REHYNEWITN IYVKPFVVIL YLIYASFSFM ENSTTRP00000003910/1-844 QQTSHHETNP YQHHFIQHFL REHYNEWITN IYVKPFVVIL YLIYASFSFM bmy_00001T0/1-802 QQTSHHETNP YQHHFIQHFL REHYNEWITN IYVKPFVVIL YLIYASFSFM BACU015841/1-510 QQTSHHETNP YQHHFIQHFL REHYNEWITN IYVKPFVVIL YLIYASFSFM 601 650 ENSP00000341914/1-846 GCLQISDGAN IINLLASDSP SVSYAMVQQK YFSNYSPVIG FYVYEPLEYW ENSBTAP00000028550/1-904 GCLQISDGAN IINLLASDSP SISYAMVQQK YFSNYSPVIG FYVYEPLEYW ENSTTRP00000003910/1-844 GCLQISDGAN IINLLASDSP SVSYAMVQQK YFSNYSPVIG FYVYEPLEYW bmy_00001T0/1-802 GCLQISDGAN IINLLASDSP SVSYAMVQQK YFSNYSPVIG FYVYEPLEYW BACU015841/1-510 GCLQISDGAN IISLLASDSP SVSYAMVQQK YFSNYSPVIG FYVYEPLEYW 651 700 ENSP00000341914/1-846 NSSVQDDLRR LCSGFTAVSW VEQYYQFLKV SNVSANNKSD FISVLQSSFL ENSBTAP00000028550/1-904 NNSVQEDLRR LCSGFTAVSW VEQYYQFLKV SNISANNKSD FISVLQSSFL ENSTTRP00000003910/1-844 NSSVQEDLRR LCSGFTAVSW VEQYYQFLKV SNISANNKSD FISVLQSSFL bmy_00001T0/1-802 NSSVQQDLRR LCSGFTAVSW VEQYYQFLKV SNISANNKSD FISVLQSSFL BACU015841/1-510 NSSVQQDLRR LCSGFTAVSW VEQYYQFLKV SNISANNKSD FISVLQSSFL 701 750 ENSP00000341914/1-846 KKPEFQHFRN DIIFSKAGDE SNIIASRLYL VARTSRDKQK EITEVLEKLR ENSBTAP00000028550/1-904 KKPEFQHFRN DIIFSKAGDE SNIIASRLYL VARTSRDKQK EVIEVLEKLR ENSTTRP00000003910/1-844 KKPEFQHFRN DIIFSKAGDE NNIIASRLYL VARTSRDKQK EVIEVLEKLR bmy_00001T0/1-802 KKPEFQHFRN DIIFSKAGDE NSIIASRLYL VARTSRDKQK EVIEVLEKLR BACU015841/1-510 KKPEFQHFRN DIIFSKAGDE NSIIASRLYL VARTSRDKQK EVIEVLEKLR 751 800 ENSP00000341914/1-846 PLSLSKSIRF IVFNPSFVFM DHYSLSVTVP VLIAGFGVLL VLILTFFLVI ENSBTAP00000028550/1-904 PLSLSKSIRF IVFNPSFVFM DHYSLSVTVP VLIAGFGVLL VLILTFFLVI ENSTTRP00000003910/1-844 PLSLSKSIRF IVFNPSFVFM DHYSLSVTVP VLIAGFGVLL VLILTFFLVI bmy_00001T0/1-802 PLSLSKSIRF IVFNPSFVFM DHYSLSVTVP VLIAGFGVLL VLILTFFLVI BACU015841/1-510 PLSLSKSIRF IVFNPSFVFM DHYSLSVTVP VLIAGFGVLL VLILTFFLVI 801 850 ENSP00000341914/1-846 HPLGNFWLIL SVTSIELGVL GLMTLWNVDM DCISILCLIY TLNFAIDHCA ENSBTAP00000028550/1-904 HPLGNFWLIL SVTSIELGVL GLMTLWNVDM DCISILCLIY TFNFAIDHCA ENSTTRP00000003910/1-844 HPLGNFWLIL SVTSIELGVL GLMTLWNIDM DCISILCLIY TLNFAIDHCA bmy_00001T0/1-802 HPLGNFWLIL SVTSIELGVL GLMTLWNIDM DCIAILCLIY TLNFAIDHCA BACU015841/1-510 HPLGNFWLIL SVTSIELGVL GLMTLWNIEM DCIAILCLIY TLNFAIDHCA 851 900 ENSP00000341914/1-846 PLLFTFVLAT EHTRTQCIKS SLQDHGTAIL QNVTSFLIGL VPLLFVPSNL ENSBTAP00000028550/1-904 PLLYTFVLAT EHTRTQCIKS SLQEHGTAIL QNVTSFLIGL VPLLFVPSNL ENSTTRP00000003910/1-844 PLLYTFVLAT EHTRTQCIKS SLQEHGTAIL QNVTSFLIGL VPLLFVPSNL bmy_00001T0/1-802 PLLYTFVLAT EHTRTQCIKS SLQEHGTAIL QNVTSFLIGL VPLLFVPSNL BACU015841/1-510 PLLYTFVLAT EHTRTQCIKS SLQEHGTAIL QNVTSFLIGL VPLLFVPSNL 901 950 ENSP00000341914/1-846 TFTLFKCLLL TGGCTLLHCF VILPVFLTFF PPSKKHHKKK KRAKRKEREE ENSBTAP00000028550/1-904 TFTLFKCLLL TGSCTLLHCF VILPVFLTFF PPSKKHHKKK KRAKRKEREE ENSTTRP00000003910/1-844 TFTLFKCLLL TGGCTLLHCF VILPVFLTFF PPSKKHHKKK KRAKRKEREE bmy_00001T0/1-802 TFTLFKCLLL TGGCTLLHCF VILPVFLTFF PPSKKHHKKK KRAKRKEREE BACU015841/1-510 TFTLFKCLLL MGGCTLLHCF VILPVFLTFF PPSKKHHKKK KRAKRKEREE 951 1000 ENSP00000341914/1-846 IECIEIQENP DHVTTV ENSBTAP00000028550/1-904 IECIEIQENP DHVTTV ENSTTRP00000003910/1-844 IECIEIQENP DHVTTV bmy_00001T0/1-802 IECIEXQENP DHVTTV BACU015841/1-510 IECIEIQENP DHVTTV