KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:07 2014 Check: 00 .. Name: ENSBTAP00000028478/1-443 Len: 532 Check: 9443 Weight: 1.00 Name: ENSP00000377037/1-466 Len: 532 Check: 8459 Weight: 1.00 Name: BACU002905/1-485 Len: 532 Check: 3360 Weight: 1.00 Name: bmy_03359T0/1-486 Len: 532 Check: 7586 Weight: 1.00 Name: ENSTTRP00000000712/1-468 Len: 532 Check: 5822 Weight: 1.00 // 1 50 ENSBTAP00000028478/1-443 --MPQTLSAS DMVTPGSLGP PHTEPTD--- ----VITCCL SPVS------ ENSP00000377037/1-466 --MPQTLSAS DMVTPGSLSP PPTEPTDGEQ AGQPLLDGAP SSASLETLIQ BACU002905/1-485 --MPRTLSTS DMVTPGSLGP PPPEPTDGEQ AGQPLLDGAP SSASLDALIE bmy_03359T0/1-486 --MPRTLSTS DMVTPGSLGP PHPEPTDGEQ AGQPLLDGAP SSASLDTLIE ENSTTRP00000000712/1-468 VGMPRTLSTS DMVTPGSLGP PHPEPTDGEQ AGQPLLDGAP SSASLDTLIE 51 100 ENSBTAP00000028478/1-443 ---------P QKAYIFTF-- ---------- ---------- ---------- ENSP00000377037/1-466 HLVPTADYYP EKAYIFTF-- ---------- ---------- ---------- BACU002905/1-485 QLVPKADYYP EKAYIFTFLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03359T0/1-486 QLVPKADYYP EKAYIFTF-- ---------- ---------- ---------- ENSTTRP00000000712/1-468 QLVPKADYYP EKAYIFTF-- ---------- ---------- ---------- 101 150 ENSBTAP00000028478/1-443 ---------- -LLSSRLFIE PQELLARVCH MCIEQQQLDK PVLDKARVRK ENSP00000377037/1-466 ---------- -LLSSRLFIE PRELLARVCH LCIEQQQLDK PVLDKARVRK BACU002905/1-485 XXXXXXXXXX XLLSSRLFIE PRELLARVCH LCIEQQQLDK PVLDKAQVRK bmy_03359T0/1-486 ---------- -LLSSRLFIE PRELLARVCH LCIEQQQLDK PVLDKAQVRK ENSTTRP00000000712/1-468 ---------- -LLSSRLFIE PQELLARVCH LCIEQQQLDK PVLDKAQVRK 151 200 ENSBTAP00000028478/1-443 FGPKLLQLLA EWTETFPRDF QEESTIGHLK DVVGRIAPCD E--------- ENSP00000377037/1-466 FGPKLLQLLA EWTETFPRDF QEESTIGHLK DVVGRIAPCD E--------- BACU002905/1-485 FGPKLLQLLA EWTETFPRDF QEESTISHLK DVVGRIAPCD E--------- bmy_03359T0/1-486 FGPKLLQLLA EWTETFPRDF QEESTISHLK DVVGRIAPCD EILDMRRQVS ENSTTRP00000000712/1-468 FGPKLLQLLA EWTETFPRDF QEESTISHLK DVVGRIAPCD E--------- 201 250 ENSBTAP00000028478/1-443 ---------- -AYRKRMHQL LQALHQKLAA LGQGPESLLG TDKPISYRTK ENSP00000377037/1-466 ---------- -AYRKRMHQL LQALHQKLAA LRQGPEGLVG ADKPISYRTK BACU002905/1-485 ---------- -AYRRRMHQL LQALHQKLAA LGQGPESLLG TDKPVSYRNK bmy_03359T0/1-486 RPEHPLSTLR QAYRKRMHQL LQALHQKLAA LGQGPESLLG TDKPISYRNK ENSTTRP00000000712/1-468 ---------- -AYRKRMHQL LQALHQKLAA LGQGPESLLG TDKPISYRNK 251 300 ENSBTAP00000028478/1-443 PPASIHRELL GICSDPYMLA QQLTHVELEQ LRHIGPEEFV QAFVNKDPLA ENSP00000377037/1-466 PPASIHRELL GVCSDPYTLA QQLTHVELER LRHIGPEEFV QAFVNKDPLA BACU002905/1-485 PPASIHRELL NICSDPYTLA QQLTHVELER LRHIGPEEFV QAFVNKDPLA bmy_03359T0/1-486 PPASIHRELL SICSDPYTLA QQLTHVELER LRHIGPEEFV QAFVNKDPLA ENSTTRP00000000712/1-468 PPASIHRELL SICSDPYTLA QQLTHIELER LQHIGPEEFV QAFVNKDPLA 301 350 ENSBTAP00000028478/1-443 STKPCFSDKT NNLEAYVKWF NRLCYLVATE ICMLGASQRS CVAIK-LCSP ENSP00000377037/1-466 STKPCFSDKT SNLEAYVKWF NRLCYLVATE ICMPAKKKQR AQVIEFFIDV BACU002905/1-485 STKPCFSDKT NNLEAYVKWF NRLCYLVATE ICMPAKKKQR AQVIEFFIDV bmy_03359T0/1-486 STKPCFSDKT NNLEAYVKWF NRLCYLVATE ICMPAKKKQR AQVIEFFIDV ENSTTRP00000000712/1-468 STKPCFSDKT NNLEAYVKWF NRLCYLVATE ICMPSKKKQR AQVIEFFIDV 351 400 ENSBTAP00000028478/1-443 DYPCQP-GPV PSLAIPLPAG MNMSPVSRLK KTWAKVKTAK FFILEHQMDP ENSP00000377037/1-466 ARECFNIGNF NSL-MAIISG MNMSPVSRLK KTWAKVRTAK FFILEHQMDP BACU002905/1-485 ARECFNIGNF NSL-MAIISG MNMSPVSRLK KTWAKVKTAK FFILEHQMDP bmy_03359T0/1-486 ARECFNIGNF NSL-MAIISG MNMSPVSRLK KTWAKVKTAK FFILEHQMDP ENSTTRP00000000712/1-468 ARECFNIGNF NSL-MAIISG MNMSPVSRLK KTWAKVKTAK FFILEHQMDP 401 450 ENSBTAP00000028478/1-443 TGNFCNYRTA LRGAAHRSLT AHSSREKIVI PFFSLLIKDI YFLNEGCANR ENSP00000377037/1-466 TGNFCNYRTA LRGAAHRSLT AHSSREKIVI PFFSLLIKDI YFLNEGCANR BACU002905/1-485 TGNFCNYRTA LRGAAHRSLT AHSSREKIVI PFFSLLIKDI YFLNEGCANR bmy_03359T0/1-486 TGNFCNYRTA LRGAAHRSLT AHSSREKIVI PFFSLLIKDI YFLNEGCANR ENSTTRP00000000712/1-468 TGNFCNYRTA LRGAAHRSLT AHSSREKIVI PFFSLLIKDI YFLNEGCANR 451 500 ENSBTAP00000028478/1-443 LPNGHVNFEK FLELAKQVGE FITWKQVECP FEQDLSITHY LHTAPIFSED ENSP00000377037/1-466 LPNGHVNFEK FLELAKQVGE FITWKQVECP FEQDASITHY LYTAPIFSED BACU002905/1-485 LPNGHVNFEK FLELAKQVGE FITWKQVECP FEQDPSITHY LHTAPIFSED bmy_03359T0/1-486 LPNGHVNFEK FLELAKQIGE FITWKQVECP FKQDPSITHY LHTAPIFSED ENSTTRP00000000712/1-468 LPNGHINFEK FLELAKQVGE FITWKQVECP FEQDPSITHY LHTAPIFSED 501 550 ENSBTAP00000028478/1-443 GLYLASYESE SPENQTEKER WKSLRSSILG KT ENSP00000377037/1-466 GLYLASYESE SPENQTEKER WKALRSSILG KT BACU002905/1-485 G-------KV AP-------- WPP------- -- bmy_03359T0/1-486 GLYLASYESE SPENQTEKER WKSLRSSILG KT ENSTTRP00000000712/1-468 GLYLASYESE SPENQTEKER WKSLRSSILG KT