KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:48 2014 Check: 00 .. Name: ENSTTRP00000000690/1-625 Len: 666 Check: 986 Weight: 1.00 Name: ENSP00000317327/1-661 Len: 666 Check: 786 Weight: 1.00 Name: ENSBTAP00000028356/1-624 Len: 666 Check: 6643 Weight: 1.00 Name: bmy_14101T0/1-605 Len: 666 Check: 7398 Weight: 1.00 Name: BACU004396/1-627 Len: 666 Check: 8764 Weight: 1.00 // 1 50 ENSTTRP00000000690/1-625 MAAGETQIYA KVSNKLKGRS TTSLLDPLLG MGFPAHIALK ALAATGRKTA ENSP00000317327/1-661 MAAGETQLYA KVSNKLKSRS SPSLLEPLLA MGFPVHTALK ALAATGRKTA ENSBTAP00000028356/1-624 MAAGETQLYA KVFNKLKGRS TPSLLDPLLG MGFPAHTALK ALAATGRKTA bmy_14101T0/1-605 MAAGETQIYA KVSNKLKGRS TTSLLDPLLS MGFPAHTALK ALAATGRKTA BACU004396/1-627 MAAGETQIYA KVSNKLKGRS TTSLLDPLLS MGFPAHTALK ALAATGRKTA 51 100 ENSTTRP00000000690/1-625 AEASDXXX-X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000317327/1-661 EEALAW---L HDHCNDPSLD DPIPQEYALF LCPTGPLLEK LQEFWRESKR ENSBTAP00000028356/1-624 EEASNW---L HCHCNDPSLD DPIPQEYALF LCPTGPLLDK LQDFWRESRR bmy_14101T0/1-605 AEASDW---L QCHCNDPSLD DPIPQEYALF LCPTGPLLDK LQEFWRESRR BACU004396/1-627 AEASDWWVRL HCHCNDPSLD DPIPQEYALF LCPTGPLLDK LQEFWRESRR 101 150 ENSTTRP00000000690/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000317327/1-661 QCAKNRAHEV FPHVTLCDFF TCEDQKVECL YEALKRAGDR LLGSFPTAVP ENSBTAP00000028356/1-624 QCAKNRAHEV FPHITLCDFF TCEDQKVEYL YEALKRAGDR TLRAFPSAVP bmy_14101T0/1-605 QCAKNRAHEV FPHITLCDFF TCEDQKVECL YEALKRAGDR TLGAFPSAVP BACU004396/1-627 QCAKNRAHEV FPHITLCDFF TCEDQKVECL YEALKRAGDR TLGAFPSAVP 151 200 ENSTTRP00000000690/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQN-- ---------- ENSP00000317327/1-661 LALHSSISYL GFFVSGSPAD VIREFAMTFA TEASLLAGTS VSRFWIFSQV ENSBTAP00000028356/1-624 LVLHSSISYL GFFVDDSPAD IIREFAVMFA TEASVLAD-- ---------- bmy_14101T0/1-605 LVLHSSVSYL GFFVNDSPAD IIQEFAVMFA TEASILAD-- ---------- BACU004396/1-627 LVLHSSVSYL GFFVNDSPAD IIQEFAVMFA TEASILAD-- ---------- 201 250 ENSTTRP00000000690/1-625 ---------- ---------- ------CIVK PCTKQLHLTL AHKFYPHHQR ENSP00000317327/1-661 PGHGPNLRLS NLTRASFVSH YILQKYCSVK PCTKQLHLTL AHKFYPHHQR ENSBTAP00000028356/1-624 ---------- ---------- ------CTVK PCTKQLHLTL AHKFYPHHQR bmy_14101T0/1-605 ---------- ---------- ------CTVK PCTKQLHLTL AHKFYPHHQR BACU004396/1-627 ---------- ---------- ------CTVK PCTKQLHLTL AHKFYPHHQR 251 300 ENSTTRP00000000690/1-625 TLEQLARAVH PGHGCQWTAA LYSRDMRFVH YQTLRVLFQY KPQNMDELTL ENSP00000317327/1-661 TLEQLARAIP LGHSCQWTAA LYSRDMRFVH YQTLRALFQY KPQNVDELTL ENSBTAP00000028356/1-624 TLEQLARAIN PSHSCQWTAT LYSRDMRFVH YQTLRVLFQY KPQNVDELTL bmy_14101T0/1-605 TLEQLARAVH PGHGCQWMAA LYSRDMRFVH YQTLRVRFQY KPQNMDELTL BACU004396/1-627 TLEQLARAVH PGHGCQWTAA LYSRDMRFVH YQTLKVRFQY KPQNMDELTL 301 350 ENSTTRP00000000690/1-625 SPGDYIFVDP TQQEEASEGW VFGISQQTGC RGFLPENYTE RASECDTWVK ENSP00000317327/1-661 SPGDYIFVDP TQQDEASEGW VIGISQRTGC RGFLPENYTD RASESDTWVK ENSBTAP00000028356/1-624 SPGDYIFVDP TQQEEASEGW VIGISQRTGC RGFLPENYTE RASECDTWVR bmy_14101T0/1-605 SPGDYIFVDP TQQEEASEGW VIGISQQTGC RGFLPENYTE RASECDTWVK BACU004396/1-627 SPGDYIFVDP TQQEEASEGW VIGISQQTGC RGFLPENYTE RASECDTWVK 351 400 ENSTTRP00000000690/1-625 HRTYTFGVAP DQSSGKDGEA SSRRNGEPQP -LPVSQS-SS LQSLQATILR ENSP00000317327/1-661 HRMYTFSLAT DLNSRKDGEA SSRCSGEFLP --QTARSLSS LQALQATVAR ENSBTAP00000028356/1-624 HRTITSSVSP YLSGRKNREA ASRSAGDPDP SPPASSVLGI LQSANATIVR bmy_14101T0/1-605 HRTYTFSVAP DLSSGKDGEA SSRRNGEPQP -PPMSRSISS LQSLQATIMR BACU004396/1-627 HRTYTFSVAS DLSSGKDGEA SSRRNGDPQP -PRMSRSISS LQSLQATIVR 401 450 ENSTTRP00000000690/1-625 KSVLVVRHGE RVDQIFGKSW LQQCSTPDGK YYRPDLNFPR SLPRRSRGIK ENSP00000317327/1-661 KSVLVVRHGE RVDQIFGKAW LQQCSTPDGK YYRPDLNFPC SLPRRSRGIK ENSBTAP00000028356/1-624 RSVLVVRHGE RVDQIFGKSW LQQCTTPDGR YYRPDLNFPR SLPKRSRGIK bmy_14101T0/1-605 KSVLVVRHGE RVDQIFGKSW LQQCSTSDGK YYRPDLNFPR SLPRRSRGIK BACU004396/1-627 KSVLVVHHGE RVDQIFGKSW LQQCSTSDGK YYRPDLNFPR SLPRRSRGIK 451 500 ENSTTRP00000000690/1-625 DFENDPPLSS CGIFQSRMAG EALLDSGIRI TSVFTSPALR CVQTAKHILE ENSP00000317327/1-661 DFENDPPLSS CGIFQSRIAG DALLDSGIRI SSVFASPALR CVQTAKLILE ENSBTAP00000028356/1-624 DFENDPPLSS CGIFQSRMAG EALLDSGIRI TSVFSSPALR CLQTAKHILG bmy_14101T0/1-605 DFENDPPLSS CGIFQSRMAG EALLDSGIRI TSVFTSPALR CVQTAKHILE BACU004396/1-627 DFENDPPLSS CGIFQSRMAG EALLGSGIRI ISVFTSPALR CVQTAKHILE 501 550 ENSTTRP00000000690/1-625 ELKLEKKIKI RVEPGIFEWT KWEAGKTTPT LMTLEELKGA NFNVSMDYXX ENSP00000317327/1-661 ELKLEKKIKI RVEPGIFEWT KWEAGKTTPT LMSLEELKEA NFNIDTDYRP ENSBTAP00000028356/1-624 EFKLEKKVKI RVEPGIFEWT KWEAGKTTPT LMTLEEMKEA DFNVSLDYRP bmy_14101T0/1-605 ELKLEKKIKI RVEPGIFEWT KWEAGKTTPT LMTLEELREA DFHARLP--- BACU004396/1-627 ELKLEKKIKI RVEPGIFEWT KWETGKTTPT LMTLEELREA DFNVSMDYRP 551 600 ENSTTRP00000000690/1-625 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXGVILV VGHGSALDSC ENSP00000317327/1-661 AFPLSALMPA ESYQEYMDRC TASMVQIVNT CPQDTGVILI VSHGSTLDSC ENSBTAP00000028356/1-624 AFPLASLLPA ESYDDYVHRC AVSMEQIVST CPQD-GVILV VGHSSALDTC bmy_14101T0/1-605 ----PSLPPA ---------C RALRGLLAQV C---VGVILV VGHGSALDSC BACU004396/1-627 AFPLPSLLPA EPYEDYLHRC AVSMEQIVST RPQDVGVILV VGHGSALDSC 601 650 ENSTTRP00000000690/1-625 TRPLLGLPPR DCTVFTQLVR KIPSLGMCFL EENKEEGKWE LVNPPVKTLT ENSP00000317327/1-661 TRPLLGLPPR ECGDFAQLVR KIPSLGMCFC EENKEEGKWE LVNPPVKTLT ENSBTAP00000028356/1-624 TRPLLGLPPR DCADFAQLVR KVPSLGMCFC EENKEEGKWE LVNPPVKTLT bmy_14101T0/1-605 TRPLLGLPPR DCTDFTQLVR KIPSLGMCFC EENKEEGKWE LVNPPVKTLT BACU004396/1-627 TRPLLGLPPR DCTDFTQLVR KIPSLGMCFC EENKEEGKWE LVNPPVKTLT 651 700 ENSTTRP00000000690/1-625 HGSNSAFNWS NWIPGN ENSP00000317327/1-661 HGANAAFNWR NWISGN ENSBTAP00000028356/1-624 HGSNSAFNWR NWIQGN bmy_14101T0/1-605 HGSNSAFNWS NWIPGN BACU004396/1-627 HGSNSAFNWS NWIPGN