KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:47 2014 Check: 00 .. Name: ENSTTRP00000000689/1-536 Len: 693 Check: 3334 Weight: 1.00 Name: ENSP00000291532/1-454 Len: 693 Check: 4457 Weight: 1.00 Name: bmy_14102T0/1-502 Len: 693 Check: 6068 Weight: 1.00 Name: ENSBTAP00000028354/1-539 Len: 693 Check: 9764 Weight: 1.00 Name: BACU004397/1-601 Len: 693 Check: 8807 Weight: 1.00 // 1 50 ENSTTRP00000000689/1-536 GRARSSQPLL PLRGGGGTGH QRARILSSLI RSSLCEPGKG CVYGKLRILG ENSP00000291532/1-454 ---------- ---------- ---------- ---------- ---------- bmy_14102T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028354/1-539 KPMVSAQPLL PLRGKGGLGT QRPRILPSLI RSSLCEPGKG CVYGKLQILG BACU004397/1-601 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000689/1-536 VSVPSL--VL SAFWGHGHDE VEVEPGLRGP EIVTMGENDP PAAEAPFSFR ENSP00000291532/1-454 ---------- ---------- ---------- ----MGENDP PAVEAPFSFR bmy_14102T0/1-502 ---------- ---------- ---------- ----MGENDP PAAEAPFSFR ENSBTAP00000028354/1-539 MTVPSLRSKY SLLFPEKEVE VEVEPGLRGP EIVTMGENDP PAAEAPFSFR BACU004397/1-601 ---------- ---------- ---------- ----MGENDP PAAEGPFSFR 101 150 ENSTTRP00000000689/1-536 SLFGLDDLKI SPVTPDADAV AAQFLSLLPL KFFPIIVIGI IALILALAIG ENSP00000291532/1-454 SLFGLDDLKI SPVAPDADAV AAQILSLLPL KFFPIIVIGI IALILALAIG bmy_14102T0/1-502 SLFGLDDLKI SPVAPDADAV AAQILSLLPL KFFPIIVIGI IALILALAIG ENSBTAP00000028354/1-539 SLFGLDDLKI SPVVPDADEV AAQILSLLPL KFFPIIVIGI IALILALAIG BACU004397/1-601 SLFGLDDLKI SPVAPDADAV AAQILSLLPL KFFPIIVIGI IALILALAIG 151 200 ENSTTRP00000000689/1-536 LGIHFDCSGK YRCRSSFKCI ELTARCDGVS DCKDGEDEYR CVRVSGQNAA ENSP00000291532/1-454 LGIHFDCSGK YRCRSSFKCI ELIARCDGVS DCKDGEDEYR CVRVGGQNAV bmy_14102T0/1-502 LGIHFDCSGK YRCRSSFKCI ELTARCDGVS DCKDGEDEYR CVRVSGQNAA ENSBTAP00000028354/1-539 LGIHFDCSGK YKCRSSFKCI ELTARCDGVS DCRDGEDEYR CVRVSGQNAV BACU004397/1-601 LGIHFDCSGK YRCRSSFKCI ELTARCDGVS DCKDGEDEYR CVRVSGQNAA 201 250 ENSTTRP00000000689/1-536 LQVFTAATWR TMCSEDWKSH HATVACAQLG FPSYVSSDTI RVDSLEEQFR ENSP00000291532/1-454 LQVFTAASWK TMCSDDWKGH YANVACAQLG FPSYVSSDNL RVSSLEGQFR bmy_14102T0/1-502 LQVFTAATWR TVCSEDWKSH HATVACAQLG FPSYVSSDTL RVDSLEEQFR ENSBTAP00000028354/1-539 LQVFTAATWR TVCAEDWKSH HATVACAQLG FPSYVSSDTL RVDSLEEQFR BACU004397/1-601 LQVFTAATWR TVCSEDWKSH HATVACAQLG FPSYVSSDTL RVDSLEEQFR 251 300 ENSTTRP00000000689/1-536 EEFVSINHLL PDDKVTTLHQ SVYVREGCTS GYVVTLKCSV CGLRTGSSPR ENSP00000291532/1-454 EEFVSIDHLL PDDKVTALHH SVYVREGCAS GHVVTLQCTA CGHRRGYSSR bmy_14102T0/1-502 EDFVSINHLL PDDKVTALHH SVYVREGCAS GRVVTLKCSV CGLRTGSSPR ENSBTAP00000028354/1-539 EDFVSINHLL PDDKVTALHH SVYTREGCTS GHVVTLKCSA CGLRTGSSPR BACU004397/1-601 EDFVSINHLL PDDKVTALHH SVYVREGCTS GRVVTLRCSV CGLRTGASPR 301 350 ENSTTRP00000000689/1-536 IVGGNVSLLA QWPWQASLQF QGYHLCGGSV ITPVWIVTAA HCVYXXXXXX ENSP00000291532/1-454 IVGGNMSLLS QWPWQASLQF QGYHLCGGSV ITPLWIITAA HCVYDLYLPK bmy_14102T0/1-502 IVGGNVSLLA QWPWQASLQF QGYHLCGGSV ITPVWVVTAA HCVYDLYLPK ENSBTAP00000028354/1-539 IVGGNTSSLA QWPWQASLQF QGYHLCGGSV ITPLWVVTAA HCVYDLYLPK BACU004397/1-601 IVGGNVSLLA QWPWQASLQF QGYHLCGGSV ITPVWVVTAA HCVYDLYLPK 351 400 ENSTTRP00000000689/1-536 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000291532/1-454 SWTIQVGLVS LLDNPAPSHL VEKIVYHSKY KPKRLGNDIA LMKLAGPLTF bmy_14102T0/1-502 SWTIQVGLVS LLDSPAPSHL VEKIIYHSKY KPKR------ ------PPEF ENSBTAP00000028354/1-539 SWTIQVGLVS LLDSPAPSHL VEKIIYHSKY KPKRLGNDIA LMKLAGPVTF BACU004397/1-601 SWTIQVGLVS LLDSPAPSHL VEKIIYHSKY KPKRLGNDIA LMKLARPVTF 401 450 ENSTTRP00000000689/1-536 XXMIQPVCLP NSEEHFPDGK MCWTSGWGAT EDG-AGDASP VLNHAAVPLI ENSP00000291532/1-454 NEMIQPVCLP NSEENFPDGK VCWTSGWGAT EDG-AGDASP VLNHAAVPLI bmy_14102T0/1-502 --LVGAPCTT RTAP------ -C-------- --SDPGDASP VLNHAAVPLI ENSBTAP00000028354/1-539 NEMTQPVCLP NSEENFPDGK LCWTSGWGAT EDGDPGDASP VLNHAAVPLI BACU004397/1-601 NEMIQPVCLP NSEEHFPDGK MCWTSGWGAT EDG--GDASL VLNHAAVPLI 451 500 ENSTTRP00000000689/1-536 SNKICNHRDV YGGIISPSMV CAGYLKGGVD SCQGDSGGPL VCQERRVWKL ENSP00000291532/1-454 SNKICNHRDV YGGIISPSML CAGYLTGGVD SCQGDSGGPL VCQERRLWKL bmy_14102T0/1-502 SNKICNHRDV YGGIISPSML CAGYLKGGVD SCQGDSGGPL VCQERRVWKL ENSBTAP00000028354/1-539 SNKVCNHRDV YGGIISPSML CAGYLKGGVD SCQGDSGGPL VCQERRVWKL BACU004397/1-601 SNKICNHRDV YGGIISPSML CAGYLKGGVD SCQGDSGGPL VCQERRVWKL 501 550 ENSTTRP00000000689/1-536 VGATSFGIGC AAANKPGVYT RITAFLDWIH EQMERDLKT- ---------- ENSP00000291532/1-454 VGATSFGIGC AEVNKPGVYT RVTSFLDWIH EQMERDLKT- ---------- bmy_14102T0/1-502 VGATSFGIGC AEVNKPGVYT RITSFLDWIH EQMEVGAAL- ---------- ENSBTAP00000028354/1-539 VGATSFGIGC AEVNKPGVYT RITSFLDWIH EQMERDLKT- ---------- BACU004397/1-601 VGATSFGIGC AEVNKPGVYT RITSFLDWIH EQMERRKVTA AMEPKVTCVL 551 600 ENSTTRP00000000689/1-536 ---------- ---------- ---------- ---------- ---------- ENSP00000291532/1-454 ---------- ---------- ---------- ---------- ---------- bmy_14102T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028354/1-539 ---------- ---------- ---------- ---------- ---------- BACU004397/1-601 VMVFALALSS LAQGEADPCQ CSRLSPKNRV NCGFPGITSD QCFSAGCCFD 601 650 ENSTTRP00000000689/1-536 ---------- ---------- ---------- ---------- ---------- ENSP00000291532/1-454 ---------- ---------- ---------- ---------- ---------- bmy_14102T0/1-502 ----PLPW-- ---------N RVLVPVSHAT SSLPSVGPQS CCPEPGSDRF ENSBTAP00000028354/1-539 ---------- ---------- ---------- ---------- ---------- BACU004397/1-601 SSIPGVPWCF KPLPKQESEE CVMEVSARKN CGYPGISPQD CTSRKCCFSD 651 700 ENSTTRP00000000689/1-536 ---------- ---------- ---------- ---------- --- ENSP00000291532/1-454 ---------- ---------- ---------- ---------- --- bmy_14102T0/1-502 VIDLSSNDFV LLRVRLSMAN PTDNALAGWA WRVGTHRASI AGM ENSBTAP00000028354/1-539 ---------- ---------- ---------- ---------- --- BACU004397/1-601 AIPQVPWCFF PLSVHGNVQF LDKHDSRG-R WELGRGRS-- ---