KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:31 2014 Check: 00 .. Name: bmy_04097T0/1-811 Len: 833 Check: 1614 Weight: 1.00 Name: ENSBTAP00000028277/1-610 Len: 833 Check: 7452 Weight: 1.00 Name: ENSP00000406751/1-614 Len: 833 Check: 4818 Weight: 1.00 Name: BACU008938/1-266 Len: 833 Check: 2451 Weight: 1.00 Name: ENSTTRP00000000977/1-593 Len: 833 Check: 5611 Weight: 1.00 // 1 50 bmy_04097T0/1-811 ---------- ---------- -MAAAVATAA VAAPAPAPRA EGASSVHWFR ENSBTAP00000028277/1-610 -GQARGAYGG GAVAARAV-- -RAVMAAAAA AATQAPAARG DGASSVHWFR ENSP00000406751/1-614 MGGVHVAYRG GAGVAGAVWT VMAATVATAA AVAPAPAPGT DSASSVHWFR BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 ---------- ---------- -MAAAVATSA VAAPAPAARA EGASSVHWFR 51 100 bmy_04097T0/1-811 KGLRLHDNPA LQAAVRGAHC MRCVYVLDPW FAASSSVGIN RWSSQARSLE ENSBTAP00000028277/1-610 KGLRLHDNPA LLAAVRGAHC VRCVYILDPW FAASSSVGIN RWRR------ ENSP00000406751/1-614 KGLRLHDNPA LLAAVRGARC VRCVYILDPW FAASSSVGIN RWR------- BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 KGLRLHDNPA LQAAVRGAHC VRCVYILDPW FAASSSVGIN RWR------- 101 150 bmy_04097T0/1-811 FLESPTPQLP PPKAWEDILQ RSASYLLGQK PGGQSPGEAW RMSYLPNETL ENSBTAP00000028277/1-610 ---------- ---------- ---------- ---------- ---------- ENSP00000406751/1-614 ---------- ---------- ---------- ---------- ---------- BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_04097T0/1-811 ATGDSAQAVG PWDRGGRHPC SPKHECGKTR ESVGPGFLLQ SLEDLDTSLR ENSBTAP00000028277/1-610 ---------- ---------- ---------- ------YVKQ GVEIKETVLR ENSP00000406751/1-614 ---------- ---------- ---------- ------FLLQ SLEDLDTSLR BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 ---------- ---------- ---------- ------FLLQ SLEDLDTSLR 201 250 bmy_04097T0/1-811 KLNSRLFVVR GQP-ADVFPR LFKEWGVTRL TFEYDSEPFG KERDAAIMKM ENSBTAP00000028277/1-610 KTSGNLVSCW KVPSSDSLPQ --QEWGVTRL TFEYDSEPFG KERDTAIMKM ENSP00000406751/1-614 KLNSRLFVVR GQP-ADVFPR LFKEWGVTRL TFEYDSEPFG KERDAAIMKM BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 KLNSRLFVVR GQP-ADVFPR LFKEWGVTRL TFEYDSEPFG KERDAAIMKM 251 300 bmy_04097T0/1-811 AKEAGVEVVT ENSHTLYDLD KIIELNGQKP PLTYKRFQAI ISRMELPKKP ENSBTAP00000028277/1-610 AKEAGVEVVT ENSHTLYDLD KIIELNGQKP PLTYKRFQAI ISRMELPRKP ENSP00000406751/1-614 AKEAGVEVVT ENSHTLYDLD RIIELNGQKP PLTYKRFQAI ISRMELPKKP BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 AKEAGVEVVT ENSHTLYDLD KIIELNGQKP PLTYKRFQAI ISRMELPKKP 301 350 bmy_04097T0/1-811 VGSVTSQQME GCRAEIQENH DETYGVPSLE ELGFPTEGLG PAVWQGGETE ENSBTAP00000028277/1-610 VGSVTSQQME GCRAEIQESH DETYGVPSLE ELGFPTEGLG PAVWQGGETE ENSP00000406751/1-614 VGLVTSQQME SCRAEIQENH DETYGVPSLE ELGFPTEGLG PAVWQGGETE BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 VGSVTSQQME GCRAEIQENH DETYGVPSLE ELGFPTEGLG PAVWQGGETE 351 400 bmy_04097T0/1-811 ALARLDKHLE RKAWVANYER PRMNANSLLA SPTGLSPYLR FGCLSCRLFY ENSBTAP00000028277/1-610 ALARLDKHLE RKAWVANYER PRMNANSLLA SPTGLSPYLR FGCLSCRLFY ENSP00000406751/1-614 ALARLDKHLE RKAWVANYER PRMNANSLLA SPTGLSPYLR FGCLSCRLFY BACU008938/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 ALARLDKHLE RKAWVANYER PRMNANSLLA SPTGLSPYLR FGCLSCRLFY 401 450 bmy_04097T0/1-811 YRLWDLYKKV KRSSTPPLSL FGQLLWREFF YTAATNNPRF DRMEGNPICI ENSBTAP00000028277/1-610 YRLWDLYKKV KRNSTPPLSL FGQLLWREFF YTAATNNPRF DRMEGNPICI ENSP00000406751/1-614 YRLWDLYKKV KRNSTPPLSL FGQLLWREFF YTAATNNPRF DRMEGNPICI BACU008938/1-266 ---------- ---------- ---------- ---------- --MEGNPICI ENSTTRP00000000977/1-593 YRLWDLYKKV KRSSTPPLSL FGQLLWREFF YTAATNNPRF DRMEGNPICI 451 500 bmy_04097T0/1-811 QIPWDRNPEA LAKWAEGKTG FPWIDAIMTQ LRQEGWIHHL ARHAVACFLT ENSBTAP00000028277/1-610 QIPWDRNPEA LAKWAEGKTG FPWIDAIMTQ LRQEGWIHHL ARHAVACFLT ENSP00000406751/1-614 QIPWDRNPEA LAKWAEGKTG FPWIDAIMTQ LRQEGWIHHL ARHAVACFLT BACU008938/1-266 QIPWDRNPEA LAKWAEGKTG FPWIDAIMTQ LRQEGWIHHL ARHAVACFLT ENSTTRP00000000977/1-593 QIPWDRNPEA LAKWAEGKTG FPWIDAIMTQ LRQEGWIHHL ARHAVACFLT 501 550 bmy_04097T0/1-811 RGDLWVSWES GVRVFDELLL DADFSVNAGS WMWLSCSAFF QQFFHCYCPV ENSBTAP00000028277/1-610 RGDLWVSWES GVRVFDELLL DADFSVNAGS WMWLSCSAFF QQFFHCYCPV ENSP00000406751/1-614 RGDLWVSWES GVRVFDELLL DADFSVNAGS WMWLSCSAFF QQFFHCYCPV BACU008938/1-266 RGDLWVSWES GVRVFDELLL DADFSVNAGS WMWLSCSAFF QQFFHCYCPV ENSTTRP00000000977/1-593 RGDLWVSWES GVRVFDELLL DADFSVNAGS WMWLSCSAFF QQFFHCYCPV 551 600 bmy_04097T0/1-811 GFGRRTDPSG DYIRRYLPKL KGFPSRYIYE PWNAPESIQK AAKCIIGVDY ENSBTAP00000028277/1-610 GFGRRTDPSG DYIRRYLPKL KGFPSRYIYE PWNAPESIQK AAKCVIGVDY ENSP00000406751/1-614 GFGRRTDPSG DYIRRYLPKL KAFPSRYIYE PWNAPESIQK AAKCIIGVDY BACU008938/1-266 GFGRRTDPSG DYIRRYLPKL KGFPSRYIYE PWNAPESIQK AAKCIIGVDY ENSTTRP00000000977/1-593 GFGRRTDPSG DYIRRYLPKL KGFPSRYIYE PWNAPESIQK AAKCIIGVDY 601 650 bmy_04097T0/1-811 PRPIVNHAET SRLNIERMKQ IYQQLSRYRG LCLLASVPSC MEDLSNPVAE ENSBTAP00000028277/1-610 PRPIVNHAEA SRLNIERMKQ VYQQLSRYRG LCLLASVPSC VEDLSNPVAE ENSP00000406751/1-614 PRPIVNHAET SRLNIERMKQ IYQQLSRYRG LCLLASVPSC VEDLSHPVAE BACU008938/1-266 PRPIVNHAET SRLNIERMKQ IYQQLSRYRG LCLLASVPSC MEDLSNPVAE ENSTTRP00000000977/1-593 PRPIVNHAET SRLNIERMKQ IYQQLSRYRG LCLLASVPSC MEDLSNPVAE 651 700 bmy_04097T0/1-811 PSSSQAGSMS SAGRVTAERT ATGQAQDHYP VAQRPPNASW EQRRSHLVKS ENSBTAP00000028277/1-610 PSSIQAGSSS SVG------- ---------- ---------- ---------- ENSP00000406751/1-614 PSSSQAGSMS SAG------- ---------- ---------- ---------- BACU008938/1-266 PSSSQAGSMS SAG------- ---------- ---------- ---------- ENSTTRP00000000977/1-593 PSSSQAGGMS SAG------- ---------- ---------- ---------- 701 750 bmy_04097T0/1-811 SANGPGWQGC PPQSCRARMS ESKGQRRPRG SAGDSLSTSA PQRASVQAPA ENSBTAP00000028277/1-610 ---------- ---------- -------PR- ---------- ------PLPG ENSP00000406751/1-614 ---------- ---------- -------PR- ---------- ------PLPS BACU008938/1-266 ---------- ---------- -------PR- ---------- ------PLPS ENSTTRP00000000977/1-593 ---------- ---------- -------PR- ---------- ------PLPS 751 800 bmy_04097T0/1-811 GIPATTLSQL QCRDSVSKAW VPEQPPWQQS ATCRTADHLP RWSKRVRVCV ENSBTAP00000028277/1-610 G-PASPKRKL EA-------- -AEEPPGGE- ---------- -LSKRARVA- ENSP00000406751/1-614 G-PASPKRKL EA-------- -AEEPPGEE- ---------- -LSKRARVA- BACU008938/1-266 G-PASPKRKL GA-------- -AEEPPGEE- ---------- -LSKRARVA- ENSTTRP00000000977/1-593 G-PASPKRKL GA-------- -AEEPPGEE- ---------- -LSKRARVA- 801 850 bmy_04097T0/1-811 CVCRGRSGPP ICVCMRLFTL LWFQTLPGLE EYL ENSBTAP00000028277/1-610 ------ESLP ---------- ---SELPSRG V-- ENSP00000406751/1-614 ------ELPT ---------- ---PELPSKD A-- BACU008938/1-266 ------GLPP ---------- ---SELPSKD V-- ENSTTRP00000000977/1-593 ------GLPP ---------- ---SELLSKD V--