KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:31 2014 Check: 00 .. Name: ENSP00000353854/1-1047 Len: 1133 Check: 942 Weight: 1.00 Name: ENSBTAP00000027992/1-1037 Len: 1133 Check: 1270 Weight: 1.00 Name: bmy_01503T0/1-1002 Len: 1133 Check: 1584 Weight: 1.00 Name: BACU017897/1-1074 Len: 1133 Check: 6843 Weight: 1.00 Name: ENSTTRP00000007578/1-1038 Len: 1133 Check: 8726 Weight: 1.00 // 1 50 ENSP00000353854/1-1047 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027992/1-1037 ---------- ---------- ---------- ---------- ---------- bmy_01503T0/1-1002 ARKAARRVAP GSVLTATSRA GPGRTRTRGL GGTGGCGRGP GQQQRELRWP BACU017897/1-1074 MAQRWWALLL GAA------- ---------- ---------- ---------- ENSTTRP00000007578/1-1038 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000353854/1-1047 ---------- --------MA EKRPLRTLGP VMYGKLPRLE TDSGLEHSLP ENSBTAP00000027992/1-1037 ---------- --------MA EKRPLGTLGP VMYGKLPRLE ADSGPGHSLP bmy_01503T0/1-1002 AGQQLSSWGP GGLEAFTVMA EKRPLGTLGP VMYGKLPRLE ADSGPGHSLP BACU017897/1-1074 RGQQLSSWGP GGLEAFTVMA EKRPLGTLGP VMYGKLPRLE ADSGPGHSLP ENSTTRP00000007578/1-1038 ---------- --------MA EKRPLGTLGP VMYGKLPRLE ADSGPGHSLP 101 150 ENSP00000353854/1-1047 HSVGNQDPCT YKGSYFSCPM AGTPKAESEQ LASWTPYPPL YSTGMAGPPL ENSBTAP00000027992/1-1037 PSAGNQDSCS YKGAYFSCPM GAPPKTGSER LAPWTPYPPL YPTSMAGPPL bmy_01503T0/1-1002 PSAGNQDPCS YKGAYFSCPM GGPPKTGSER LASWTPYPPL YPTSMAGPPL BACU017897/1-1074 PSAGNQDPCS YKGAYFSCPM GGPPKTGSER LASWTPYPPL YPTNMAGPPL ENSTTRP00000007578/1-1038 PSAGNQEPCS YKGAYFSCPM GGPPKTGSER LASWTPYPPL YPTSMAGPPL 151 200 ENSP00000353854/1-1047 QADNLLTNCL FYRSPAEGPE KMQDSSPVEL LPFSPQAHSY PGPPLAAPKP ENSBTAP00000027992/1-1037 RANNLLTSCL LYRPSTESSE KVQDSGPVEL LPFGPQSHSY PGPPLAAPKP bmy_01503T0/1-1002 RADNLLTSCL LYRPPTESSE KVQDSGPVEL LPFGPQAHSY PGPPLAAPKP BACU017897/1-1074 RADNLLTSCL LYRPPTESSE KVQDSGPVEL LPFGPQAHSY PGPPLAAPKP ENSTTRP00000007578/1-1038 RADNLLTSCL LYRPPTESSE KVQDSGPVEL LPFGAQAHSY PGPPLAAPKP 201 250 ENSP00000353854/1-1047 VYRNPLCYGL STCLGEGAVK RPLDVDWTLA TGPLLPSADP PCSLAPAPSK ENSBTAP00000027992/1-1037 VYRSPLCYGL ATCLGAGAPK KPLDVDWTLV TGSLLPPVGP SCSLPPASGK bmy_01503T0/1-1002 VYRNPLCYGL STCLGEGAAK RPLDVDWTLV TGSLLPPADP SCSLPPAPGX BACU017897/1-1074 VYRNPLCYGL STCLGEGAAK RPLDVDWTLV TGSLLPPADP SCSLPPAPGK ENSTTRP00000007578/1-1038 VYRNPLCYGL STCLGEGAAK RPLDVDWTLV TGSLLPPADP SCSLPPAPGK 251 300 ENSP00000353854/1-1047 GQTLDGTFLR GVPAEGSSKD SSGSFSPCQP FLEKYQTIHS TGFLASRYTG ENSBTAP00000027992/1-1037 GQFLDGTFLR GVPAGASDKD SSVSFSPCQA FLEKYRALHG TGFLASKYAS bmy_01503T0/1-1002 GQSLDGTFLR GVPAGTSGKD SSVSFSPCQA FLEKYRTIHS TGFLASKYAG BACU017897/1-1074 GQSLDGTFLR GVPAGTSGKD SSVSFSPCQA FLEKYRTIHS TGFLASKYAG ENSTTRP00000007578/1-1038 GQSLDGTFLR GVPAGTSGKD SSVSFSPCQA FLEKYRTIHS TGFLASKYAG 301 350 ENSP00000353854/1-1047 PYPRNSKQAM SEGPSSPWTQ LAQPLGPPCQ DTGPTHYPPP HHPPPHPPQA ENSBTAP00000027992/1-1037 PYSGDPKQAL SEGPPSPWTQ LAQPLGPACQ DAAPPHYPLP -----HPTQP bmy_01503T0/1-1002 PYSGDPKQAL SEGPPSPWTQ LAQPLGPACQ DAVPTHYPLP -----HPAQA BACU017897/1-1074 PYSGDPKQAL SEGPPSPWTQ LAQPLGPACQ DAVPTHYPLP -----HPAQA ENSTTRP00000007578/1-1038 PYSGDPKQAL SEGPPSPWTQ LAQPLGPACQ DAVPTHYPLP -----HPAQA 351 400 ENSP00000353854/1-1047 LPCPPACRHP EKQGSYSPAL PLQPLGGHKG TGYQAGGLGS PYLRQQAAQA ENSBTAP00000027992/1-1037 VPCPPACRHP EKPGSYSSVL PLQPLGAPKG AGYPAGGLNS PYLRQQAIQT bmy_01503T0/1-1002 LPCPPACRHP EKQGSYGSML PPQPLGAHKG TGYTAGGLSS PYLRQQAAQT BACU017897/1-1074 FPCPPACRHP EKQGSYGSML PPQPLGAHKG AGYAAGGLSS PYLRQQAAQT ENSTTRP00000007578/1-1038 LPCPPACRHP EKQGSYGSVL PPQPLGAHKG AGYPASGLSS PYLRQQAAQT 401 450 ENSP00000353854/1-1047 PYIPPLGLDA YPYPSAPLPA PSPGLKLEPP LTPRCPLDFA PQTLSFPYAR ENSBTAP00000027992/1-1037 PYMPPVGLDP YAYPSAPLPA PSPGLKLEPP LTPRCPLDFA PQTLGFPYAR bmy_01503T0/1-1002 PYMPPVGLDT YSYPSAPLPA PSPGLKLEPP LAPRCPVDFA PQTLGFPYAR BACU017897/1-1074 PYMPPVGLDT YSYPSAPLPA PSPGLKLEPP LAPRCPVDFA PQTLGFPYAR ENSTTRP00000007578/1-1038 PYMPPVGLDT YSYPSAPLPA PSPGLRLEPP LAPRCPVDFA PQTLGFPYAR 451 500 ENSP00000353854/1-1047 DDLSLYGASP GLGGTPPSQN NVRAVPQPGA FQRACQPLPA SQPCSEPVRP ENSBTAP00000027992/1-1037 EDLSLYGASP GLGGMPPSQN SVQALPKPGA FQRACQPLPA SRPCSEPMRP bmy_01503T0/1-1002 DDLSLYGASP GLGGTPPSQN SVQAVPQPSA FQRACQPLPA SQPCLEPARP BACU017897/1-1074 DDLSLYGASP GLGGTPPSQN GVQAVPQPGA FQRPCQPLPA SQPCLEPARP ENSTTRP00000007578/1-1038 DDLSLYGASP GLGGTPPSQN SVQAVPQPGA FQRACQPLPA SQPCLEPARP 501 550 ENSP00000353854/1-1047 A----QEAEE KTWLPSCRKE KLQPRLSEHS GPPIVIRDSP VPCTPPALPP ENSBTAP00000027992/1-1037 AEKPVQEAEE KMWLPSCRKE HPQPQPDEHP GAPIVIGDSP VPRTPPPLPP bmy_01503T0/1-1002 AEKPVQEAEE KMWLPSCRRE QLQPQLDEHP GAPIIIGDSP VPRTPPALPP BACU017897/1-1074 AEKPAQEAEE KMWLPSCRRE QRQPQRDEHP GAPIIIGDSP VPRTPPALPP ENSTTRP00000007578/1-1038 AEKPVQEAEE KMWLPSCRRE QPQPHLDEHP GAPIIIGDSP VPRTPPALPP 551 600 ENSP00000353854/1-1047 CARECQSLPQ KEGARPPSSP PMPVIDNVFS LAPYRDYLDV PAPEATTEPD ENSBTAP00000027992/1-1037 CAQERQSLPQ NEGSLPPSSP PMPVIDNVFS LAPYRDYLDV PAPE------ bmy_01503T0/1-1002 CAQERQSLPQ NDGTLPPSSP PMPIIDNVFS LAPYRDYLDV QAPE------ BACU017897/1-1074 CAQERQSLPQ NNGTLPPSSP PMPIIDNVFS LAPYRDYLDV QAPE------ ENSTTRP00000007578/1-1038 CAQERQSLTQ NEGTLPPSSP PMPIIDNVFS LAPYRDYLDV QAPE------ 601 650 ENSP00000353854/1-1047 SATAEPDSAP ATSEGQDKGC RGTLPAQEGP SGSKPLRGSL KEEVALDLSV ENSBTAP00000027992/1-1037 -APAEPELAP APNESHDRDC GRSLPAQEAP SSEHP---SL KEEVALDLSV bmy_01503T0/1-1002 -ATDEPAPAP APDESHDKDC RGSLPGREAP SSVHA---SL KEEVALDLSV BACU017897/1-1074 -ATDEPDPAP APDESHDKDC RGSLPGREAP SSVHA---SL KEEVALDLSV ENSTTRP00000007578/1-1038 -ATAEPDPAP APSENHDKDC RGSLPGREAP ECAA----SL KEEVALDLSV 651 700 ENSP00000353854/1-1047 RKPTAEASPV KASRSVEHAK PTAAMDVPDV GNMVSDLPG- ---------L ENSBTAP00000027992/1-1037 KKTTAEASPT KVPHPMGRAK PTAAVDMPAT GSNVSNVPGT GDTVSDPQGL bmy_01503T0/1-1002 KKTAAEAPPT KVPHPAGHAK PTAAVDVPGV GNTVSDMPGV GDTVSDRQVL BACU017897/1-1074 KKTAAEAPPT KVPHPAGHAK PTAAVDVPGV GNTVSDMPGV GDMVSDRQVL ENSTTRP00000007578/1-1038 KKTAAEAPPT KVPHPAGHAK PTAAVDVPGA GNTVSDMPG- ---------L 701 750 ENSP00000353854/1-1047 KKIDTEAPGL PGVPVTTDAM PRTNFHSSVA FMFRKFKILR PAPLPAAVVP ENSBTAP00000027992/1-1037 QKAVTEVPEP PGLPVTTEAT PRTNFHSSVA FMFRKFKIIR PAPLPATVVP bmy_01503T0/1-1002 KKVVTEAPDL PGVPVTAEAT PRTNFHSSVA FMFRKFKILR PAPLPATVVP BACU017897/1-1074 KKVVTEAPDL PGVPVTAEAT PRTNFHSSVA FMFRKFKILR PAPLPATVVP ENSTTRP00000007578/1-1038 KKVVTEAPDL PGVPVTTEAT PRTNFHSSVA FMFRKFKILR PAPLPATVVP 751 800 ENSP00000353854/1-1047 STPTSAP--A PTQPAPTPTS GPIGLRILAQ QPLSVTCFSL ALPSPPAVAV ENSBTAP00000027992/1-1037 SVPTLAP--A PAQPVPTPTP VPPGLQMLTQ -PLPMACFGL TLPSPPAVAM bmy_01503T0/1-1002 AVVPAVPTSA PAQPAPTPTP VPAGLQILTQ -PLPVACFNL ALPSPPAVAM BACU017897/1-1074 AVVPAVPTSA PAQPAPTPTP VPAGLQILTQ -PLPVACFNL ALPSPPAVAM ENSTTRP00000007578/1-1038 AVVPAVPTSA PAQPAPTPTP VPAGLQILTQ -PLPVACFNL ALPSPPAVAM 801 850 ENSP00000353854/1-1047 ASPAPAPAPS PAPARAQAPA SARDPAPAP- -APVAGPAPA STSAPGDSLE ENSBTAP00000027992/1-1037 ASPASMPAPA PSPAPA---- ----PAPAP- -APVAGPSPA STPTTADSSE bmy_01503T0/1-1002 TSPASAPALA PSPAPAPAPA ----PAPAP- -APVAGPAPA STPATADSPE BACU017897/1-1074 TSPASAPAPA PSPAPAPAPA ----PAPAP- -APVAGPAPA STPAAADSPE ENSTTRP00000007578/1-1038 TSPASAPAPA PSPAPAPAPA PAPAPAPAPA LAPVVGPAPA STPATADSPE 851 900 ENSP00000353854/1-1047 QHFTGLHASL CDAISGSVAH SPPEKLREWL ETAGPWGQAA WQDCQGVQGL ENSBTAP00000027992/1-1037 QHFAGLHASL CDAISGSVAH SPPEKLREWL ATSGPWGRAA WQDCQGVQGL bmy_01503T0/1-1002 QHFAGLHASL CDAISGSVAH SPPEKLREWL ETSGPWGRAA WQDCQGVQGL BACU017897/1-1074 QHFAGLHASL CDAISGSVAH SPPEKLREWL ETSGPWGRAA WQDCQGVQGL ENSTTRP00000007578/1-1038 QHFAGLHASL CDAISGSVAH SPPEKLREWL ETSGPWGRAA WQDCQGVQGL 901 950 ENSP00000353854/1-1047 LAKLLSQLQR FDRTHRCPFP HVVRAGAIFV PIHLVKERLF PRLPPASVDH ENSBTAP00000027992/1-1037 LGKLLSQLQS FVCTQQCPFP HVVRAGAIFV PIHLVKERLF PRLPPASVDH bmy_01503T0/1-1002 LGKLLSQLQS FVCTQQCPFP HVVRAGAIFV PIHLVKERLF PRLPPASVDH BACU017897/1-1074 LGKLLSQLQS FVCTQQCPFP HVVRAGAIFV PIHLVKERLF PQLPPASVDH ENSTTRP00000007578/1-1038 LSKLLSQLQS FVCTQQCPFP HVVRAGAIFV PIHLVKERLF PRLPPASVDH 951 1000 ENSP00000353854/1-1047 VLQEHRVELR PTTLSEERAL RELALPGCTS RMLKLLALRQ LPDIYPDLLG ENSBTAP00000027992/1-1037 VLQEHRVELR PTTLSEERAL RERALHGCTS RMLKLLALRQ LPDIYPDLLG bmy_01503T0/1-1002 VLQEHRVELR PTTLSEERAL RERALHGCTS RMLKLLALRQ LPDIYPDLLG BACU017897/1-1074 VLQEHRVELR PTTLSEERAL RERALHGCTS RMLKLLALRQ LPDIYPDLLG ENSTTRP00000007578/1-1038 VLQEHRVELR PTTLSEERAL RERALHGCTS RMLKLLALRQ LPDIYPDLLG 1001 1050 ENSP00000353854/1-1047 LQWRDCVRRQ LGDFDTEAGA VSSSEPTVAR GEPESLALAQ KSPAPKVRKP ENSBTAP00000027992/1-1037 LQWRDCVRRQ LGDFNTEPGS VPSSESTMAR EEPGSLDLTW KSAAPKAKKP bmy_01503T0/1-1002 LQWRDCVRRQ LGE------- ---------- ---------- ---------- BACU017897/1-1074 LQWRDCVRRQ LGDFDTEAGS VPSSEPTVAR EEPESLDLAW KLSAPKAKKP ENSTTRP00000007578/1-1038 LQWRDCVRRQ LGDFDTEAGS VPSSEPTVAR EEPESLDLAW KLSAPKAKKP 1051 1100 ENSP00000353854/1-1047 GRKPPTPGPE KAEAAAGEES CGASPTPATS ASPPGPTLKA RFRSLLETAW ENSBTAP00000027992/1-1037 GRKPPTPGPE KAEATAAGGS RGASPTPAAG ASLPGPTVKA RFRSLLESAW bmy_01503T0/1-1002 ---------- ---------- HGAAPVATGA V--------- ---------- BACU017897/1-1074 GRKPPAPGLE KAEATAGGGS RGASPTPAAG ASSPGPAMRA RFRSLLESAW ENSTTRP00000007578/1-1038 GRKPPTPGLE KAEATAGGGS RGASPTPAAG ASLPGPAMRA RFRSLLESAW 1101 1150 ENSP00000353854/1-1047 LNGLALPTWG HKSSRPDQPS PCPQLLDSQS HHL ENSBTAP00000027992/1-1037 LNGLALPTWG HKASGPDRTA PRPQLLGSQS HQL bmy_01503T0/1-1002 ---------- ---------- ---------- --- BACU017897/1-1074 LNGLALPTWG HKASGPDRTA PRPQLLGSQS HQL ENSTTRP00000007578/1-1038 LNGLALPTWG HKASGPDRTA PRPQLLGSQS HQL