KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:29 2014 Check: 00 .. Name: bmy_20813T0/1-383 Len: 623 Check: 6669 Weight: 1.00 Name: ENSP00000323913/1-548 Len: 623 Check: 9674 Weight: 1.00 Name: ENSBTAP00000027975/1-548 Len: 623 Check: 2058 Weight: 1.00 Name: BACU011112/1-546 Len: 623 Check: 5924 Weight: 1.00 Name: ENSTTRP00000004097/1-535 Len: 623 Check: 4102 Weight: 1.00 // 1 50 bmy_20813T0/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000323913/1-548 MSASLNYKSF SKEQQTMDNL EKQLICPICL EMFTKPVVIL PCQHNLCRKC ENSBTAP00000027975/1-548 MSASLNYKSF SKEQQTMDNL EKQLICPICL EMFTKPVVIL PCQHNLCRKC BACU011112/1-546 MSASLNYKSF SKEQQTMDNL EKQLICPICL EMFTKPVVIL PCQHNLCRKC ENSTTRP00000004097/1-535 MSASLNYKSF SKEQQTMDNL EKQLICPICL EMFTKPVVIL PCQHNLCRKC 51 100 bmy_20813T0/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000323913/1-548 ASDIF---QA SNPYLPTRGG TTMASGGRFR CPSCRHEVVL DRHGVYGLQR ENSBTAP00000027975/1-548 ASDIFQQEQA SNPYLPTRGG TTVASGGRFR CPSCRHEVVL DRHGIYGLQR BACU011112/1-546 ASDIF---QA SNPYLPTRGG STVASGGRFR CPSCRHEVVL DRHGIYGLQR ENSTTRP00000004097/1-535 ASDIF---QA SNPYLPTRGG STVASGGRFR CPSCRHEVVL DRHGIYGLQR 101 150 bmy_20813T0/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000323913/1-548 NLLVENIIDI YKQESTRPEK KSDQPMCEEH EEERINIYCL NCEVPTCSLC ENSBTAP00000027975/1-548 NLLVENIIDI YKQESTRPEK KSDQPMCEEH EDERINIYCL NCEVPTCSLC BACU011112/1-546 NLLVENIIDI YKQESTRPEK KSDQPLCEEH EDERINIYCL NCEVPTCSLC ENSTTRP00000004097/1-535 NLLVENIIDI YKQESTRPEK KSDQPLCEEH EDERINIYCL NCEVPTCSLC 151 200 bmy_20813T0/1-383 ---------- ---------- ---------- ---------- ---------- ENSP00000323913/1-548 KVFGAHKDCQ VAPLTHVFQR QKSELSDGIA ILVGSNDRVQ GVISQLEDTC ENSBTAP00000027975/1-548 KVFGAHKDCQ VAPLTHVFQR QKSELSDGIA VLVGSNDRVQ GVISQLESTC BACU011112/1-546 KVFGAHKDCQ VAPLTHVFQR QKSELSDGIA VLVGSNDRVQ GVISQLQDTC ENSTTRP00000004097/1-535 KVFGAHKDCQ VAPLTHVFQR QKSELSDGIA VLVGSNDRVQ GVISQLEDTC 201 250 bmy_20813T0/1-383 ---------- ---------- ---------- -MTQVITRTQ EEKLEHVRAL ENSP00000323913/1-548 KTIEECCRKQ KQELCEKFDY LYGILEERKN EMTQVITRTQ EEKLEHVRAL ENSBTAP00000027975/1-548 KTIEECCRKQ KQELCEKFDY LYGILEERKN EMTQVITRTQ EEKLEHVRAL BACU011112/1-546 KTIEECCRKQ KQELCEKFDY LYGILEERKN EMTQVITRTQ EEKLEHVRAL ENSTTRP00000004097/1-535 KTIEECCRKQ KQELCEKFDY LYGILEERKN EMTQVITRTQ EEKLEHVRAL 251 300 bmy_20813T0/1-383 IKKYSDHLEN VSKLVESGIQ FMDEPEMAVF LQNAKTLLQK ISEASKAFQM ENSP00000323913/1-548 IKKYSDHLEN VSKLVESGIQ FMDEPEMAVF LQNAKTLLKK ISEASKAFQM ENSBTAP00000027975/1-548 IKKYSDHLEN VSKLVESGIQ FMDEPEMAVF LQNAKTLLQK ISEASKAFQM BACU011112/1-546 IKKYSDHLEN VSKLVESGIQ FMDEPEMAVF LQNAKTLLQK ISEASKAFQM ENSTTRP00000004097/1-535 IRKYSDHLEN VSKLVESGIQ FMDEPEMAVF LQNAKTLLQK ISEASKAFQM 301 350 bmy_20813T0/1-383 EKIEHGYENM NHFAVNLSRE EKIIREIDFY REDED-EEEG EEGDGEGQGE ENSP00000323913/1-548 EKIEHGYENM NHFTVNLNRE EKIIREIDFY REDED-EEEE EGGEGEKEGE ENSBTAP00000027975/1-548 EKIEHDYENM NHFTVNLNRE EKIIREIDFY REDEDEEEEG EEGEGEGEEE BACU011112/1-546 EKIEHGYENM NHFAVNLSRE EKIIREIDFY REDED-EEEG EEGDGEGEGE ENSTTRP00000004097/1-535 EKIEHGYENM NHFAVNLSRE EKVIREIDFY REDED-EEGG EEGEGEGE-- 351 400 bmy_20813T0/1-383 GGEGEGEGGE VVEVEEAENV QTESSGGDES PEKGLEPSPP ALELQAAPE- ENSP00000323913/1-548 GEVG----GE AVEVEEVENV QTEFPGEDEN PEKASELSQ- -VELQAAPGA ENSBTAP00000027975/1-548 G--------- -VEVEEAEDV QTESSGGDQS PEKGLEPSPP TLELQAAPEA BACU011112/1-546 GGEGEGEGGE VVEVEEAENV QTESSGGDGS PEKGLEASPP ASELQAAPE- ENSTTRP00000004097/1-535 ---------E VVEVEEAENV RTESSGGDET PEKGLESRPP TSELQAAPE- 401 450 bmy_20813T0/1-383 -------PPP ALPPAADAPV TQGEVAPTGS QQTTESETPV PAATDTADPL ENSP00000323913/1-548 LPVSSPEPPP ALPPAADAPV TQGEVVPTGS EQTTESETPV PAAAETADPL ENSBTAP00000027975/1-548 PPVPSPDPPP ALLPAMEAPV TQGEVVPTGS QQTTESETPV PAATDTAEPL BACU011112/1-546 -------PPP ALPPAADAPA TQGEVVPTGS QQTPESETPV PAATDTADPL ENSTTRP00000004097/1-535 -------PPP ALPPAADAPV TQGEVVPTGS QQTTESETTV PAATDTADPL 451 500 bmy_20813T0/1-383 LYPSWYKGQT RKTTTNPPST PGSEGLGHVG PSGSEDPNVR KAEGAEAAAS ENSP00000323913/1-548 FYPSWYKGQT RKATTNPPCT PGSEGLGQIG PPGSEDSNVR KAEVAAAAAS ENSBTAP00000027975/1-548 LYPSWYKGQT RKSTANPPSA PGSGSLARVG PSGSKDVHAR KAEGAEAAAR BACU011112/1-546 FYPSWYKGQT RKTTTNPPST PGSEGLGHVG PSCSEDPNVR KAEGAEAAAS ENSTTRP00000004097/1-535 FYPSWYKGQT RKTTTNPPST PGSEGLGHVG PSGSEDPNVR KAEGAEAAAS 501 550 bmy_20813T0/1-383 ERAAVSGKET SSPAATSQVS VDALVSECYP PCRPGSSRDD GKKEGLPKGQ ENSP00000323913/1-548 ERAAVSGKET SAPAATSQIG FEA------P PLQ-GQAAAP ASGSG---AD ENSBTAP00000027975/1-548 ERAAVSGKDA SSPAATSQAG FEN------P PLQ-RQAAAS GSGNG---AD BACU011112/1-546 ERAAVSGKET SSPAATSQTG FED------P PLQ-GQAAAS GSGNG---AD ENSTTRP00000004097/1-535 ERAAVSGKET SSPAATSQTG FED------T PLQ-GQAAAS GSGNG---AD 551 600 bmy_20813T0/1-383 REPRALGKTE ATHAPVLACF SKPYMKHKKH KFDFTLPMRG DLIPGFPGEG ENSP00000323913/1-548 SEP------- ---------- -------ARH IFSFS----- ---------- ENSBTAP00000027975/1-548 SEP------- ---------- -------ARH VFSFS----- ---------- BACU011112/1-546 SEP------- ---------- -------ARH VFSFS----- ---------- ENSTTRP00000004097/1-535 SQP------- ---------- -------ARH VFSFS----- ---------- 601 650 bmy_20813T0/1-383 CKRAWPLGLQ VKAAPSAVAG WCP ENSP00000323913/1-548 ----WLNSLN E--------- --- ENSBTAP00000027975/1-548 ----WLNSLS E--------- --- BACU011112/1-546 ----WLNSLN E--------- --- ENSTTRP00000004097/1-535 ----WLNSLN E--------- ---