KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:00 2014 Check: 00 .. Name: ENSP00000260702/1-756 Len: 789 Check: 9723 Weight: 1.00 Name: ENSBTAP00000027838/1-536 Len: 789 Check: 8927 Weight: 1.00 Name: ENSTTRP00000005586/1-755 Len: 789 Check: 1862 Weight: 1.00 Name: bmy_20143T0/1-723 Len: 789 Check: 2947 Weight: 1.00 Name: BACU012421/1-696 Len: 789 Check: 1540 Weight: 1.00 // 1 50 ENSP00000260702/1-756 ---------- ---------- ---------- MAWSPPAT-- LFLFLLLLGQ ENSBTAP00000027838/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005586/1-755 ---------- ---------- ---------- TMWSLPAAFP PLLLLLLLGQ bmy_20143T0/1-723 KRPEVRGGRG DHCHIYSFPG ALTPAALEVT TMWSLPAAFP LPLLLLLLGQ BACU012421/1-696 ---------- ---------- ---------- -MWSLPAAFP LPLLLLMLGQ 51 100 ENSP00000260702/1-756 PPPSRPQSLG TTKLRLVGPE SKPEEGRLEV LHQGQWGTVC DDNFAIQEAT ENSBTAP00000027838/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005586/1-755 TPPSRLQSLS TMKLRLVGPG SRPEEGRLEV LHQGQWGTVC DDDFALQEAT bmy_20143T0/1-723 TPPSRPQSLS TMKLRLVGPG SRLEEGRLEV LHQGQWGTVC DDDFALQEAT BACU012421/1-696 ILPSRPQSLS TMKLRLVGPG SRPEEGRLEV LHQGQWGTVC DDDFALQEAT 101 150 ENSP00000260702/1-756 VACRQLGFEA ALTWAHSAKY GQGEGPIWLD NVRCVGTESS LDQCGSNGWG ENSBTAP00000027838/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005586/1-755 VACRQLGFEA ALTWAHSAKY GPGEGPIWLD NVHCVGTESS LDQCRSNGWG bmy_20143T0/1-723 VACRQLGFEA ALTWAHSAKY GPGEGPIWLD NVHCVGTESS LDQCRSNGWG BACU012421/1-696 VACRQLGFEA ALTWAHSAKY GPGEGPIWLD NVHCVGTESS LDQCRSNGWG 151 200 ENSP00000260702/1-756 VSDCSHSEDV GVICHPRRHR GYLSETVSNA LGPQGRRLEE VRLKPILASA ENSBTAP00000027838/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005586/1-755 VSDCSHSEDV GVVCHPQRQR GYLSERVSNA LGPQGRRLEE VRLKPILASA bmy_20143T0/1-723 VSDCSHSEDV GVVCHPQRQR GYLSERVSNA LGPQGRRLEE VRLKPILASA BACU012421/1-696 VSDCSHSEDV GVVCHPQRQR GYLSERVSNA LGPQGRRLEE VRLKPILASA 201 250 ENSP00000260702/1-756 KQHSPVTEGA VEVKYEGHWR QVCDQGWTMN NSRVVCGMLG FPSEVPVDSH ENSBTAP00000027838/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005586/1-755 KRQSLVTEGA VEVKYEGHWR QVCDQGWTGN NSRVVCGMLG FPSEAPVVSH bmy_20143T0/1-723 KRQSLVTEGA VEVKYEGHWR QVCDQGWTRN NSRVVCGMLG FPSEAPVVSH BACU012421/1-696 KRQSLVTEGA VEVKYEGHWR QVCDQGWTRN NSRVVCGMLG FPSEAPVVSH 251 300 ENSP00000260702/1-756 YYRKVWDLKM RDPKSRLKSL TNKNSFWIHQ VTCLGTEPHM ANCQVQVAPA ENSBTAP00000027838/1-536 --RKVWDSKM KDPNSRLKSL TKKNSFWIHR VNCLGTEPHM ANCQVQVAPA ENSTTRP00000005586/1-755 HYRKVWNSKM KDPKSRLKSL TKKNSFWIHR VNCLGTEPHM ANCQVQVAPA bmy_20143T0/1-723 YYSKVWNSKM KDPKSRLKSL TKKNSFWIHR VNCLGTEPHM ANCQVQVAPA BACU012421/1-696 YYRKVWNSKM KDPKSRLKSL TKKNSFWIHR VSCLGTEPHM ANCQVQVAPA 301 350 ENSP00000260702/1-756 RGKLRPACPG GMHAVVSCVA GPHFRPPKTK PQRKGSWAE- EPRVRLRSGA ENSBTAP00000027838/1-536 QGKLRPACPG GMHAVVSCVA GPRFRPPKAK PGRKESRAE- EMKVRLRSGA ENSTTRP00000005586/1-755 QGKLRPACPG GMHAVVSCVA GPRFRPLKEK PGSKESWAE- ETRVRLRSGA bmy_20143T0/1-723 QGKLRPACPG GMHAVVSCVA GPRFRPLKAK PGRKESWAEQ ETRVRLRSGA BACU012421/1-696 QGKLRPACPG GMHAVVSCVA GPRFRPLKAK PGHKESWAE- ---------- 351 400 ENSP00000260702/1-756 QVGEGRVEVL MNRQWGTVCD HRWNLISASV VCRQLGFGSA REALFGARLG ENSBTAP00000027838/1-536 QVGEGRVEVL MNRQWGTVCD HGWNLISASV VCRQLGFGSA REALFGAQLG ENSTTRP00000005586/1-755 QVGEGRVEVL RNRRWGTVCD HGWNLISASV VCRQLGFGSA REALFGAQLG bmy_20143T0/1-723 QVGEGRVEVL MNRQWGTVCD HGWNLISASV VCRQLGFGSA REALFGAQLG BACU012421/1-696 ---------- ---------- ---------- ----LGFGSA REALFGAQLG 401 450 ENSP00000260702/1-756 QGLGPIHLSE VRCRGYERTL SDCPALEGSQ NGCQHENDAA VRCNVPNMGF ENSBTAP00000027838/1-536 QALGPIHLSE VRCRGYERTL SDCPSLEGSQ NGCQHDNDAA VRCNIPNMGF ENSTTRP00000005586/1-755 QALGPIHLSE VRCGGYERTL SDCPSLEGSQ SGCQHDNDAA VRCNIPNLGF bmy_20143T0/1-723 QALGPIHLSE VHCGGYERTL SDCPSLEGSQ NGCQHDNDAA VRCNIPNLGF BACU012421/1-696 QALGPIHLSE VRCGGHERTL SDCSSLEGSQ NGCQHDNDAA VRCNIPNLGF 451 500 ENSP00000260702/1-756 QNQVRLAGGR IPEEGLLEVQ VEVNGVPRWG SVCSENWGLT EAMVACRQLG ENSBTAP00000027838/1-536 QDQVRLAGGR SPEEGVVEVQ VEVNGVQRWG AVCSDHWGLS EAMVACRQLG ENSTTRP00000005586/1-755 QDQVRLAGGR SPEEGVVEVQ VDVNGVQRWG AVCSDHWGLS EAMVACRQLG bmy_20143T0/1-723 QDQ------- ---------- ---------- ---------- ---------- BACU012421/1-696 QDQVRLAGGR SPEEGVVEVQ VDVNGVQRWG AVCSDHWGLN EAMVACRQLG 501 550 ENSP00000260702/1-756 LGFAIHAYKE TWFWSGTPRA QEVVMSGVRC SGTELALQQC QRHGPVHCSH ENSBTAP00000027838/1-536 LGFASHAIKD TWYWQGTPGA REVVMSGVHC SGTELALQQC QRHGPVHCSH ENSTTRP00000005586/1-755 LGFANHAIKD TWYWQGTPGA GEVVMSGVHC S-TELALQQC QRHGPVHCSH bmy_20143T0/1-723 ---------D TWYWQGTPGA GEVVMSGVHC SGTELALQQC QRHGPVHCSH BACU012421/1-696 LGFANHAVKD TWYWQGTPGA GEVVMSGVHC SGTELALQQC QRHGPVHCSH 551 600 ENSP00000260702/1-756 GGGRFLAGVS CMDSAPDLVM NAQLVQETAY LEDRPLSQLY CAHEENCLSK ENSBTAP00000027838/1-536 GTGRFSAGVS CTDSAPDLVM NAQLVQETAY LEDRPLSLLY CAHEENCLSQ ENSTTRP00000005586/1-755 GR-HFSAGV- CTDSAADLVL NAQLVQETAY LEDRPLSQLY CAHEENCLSR bmy_20143T0/1-723 GAGHFSAGVS CTDSAADLVL NAQLVQETAY LEDRPLSQLY CAHEENCLSQ BACU012421/1-696 GAGHFSAGVS CTDSAADLVL NAQLVQETAY LEDRPLSQLY CAHEENCLSQ 601 650 ENSP00000260702/1-756 SADHMDWPYG YRRLLRFSTQ IYNLGRTDFR PKTGRDSWVW HQCHRHYHSI ENSBTAP00000027838/1-536 SADRMDWPYG HRRLLRFSSQ IHNLGRADFR PKMGRHGWIW HQCHRHYHSI ENSTTRP00000005586/1-755 SADRMDWPYG HRRLLRFSSQ IHNLGRADFR PKTGRHSWIW HQCHRHYHSI bmy_20143T0/1-723 SADRMDWPYG HRRLLRFSSQ IHNLGRADFR PKTGRHSWIW HQCHRHYHSI BACU012421/1-696 SADRMDWPYG HRRLLRFSSQ IHNLGRADFR PKTGRHSWIW HQCHRHYHSI 651 700 ENSP00000260702/1-756 EVFTHYDLLT LNGSKVAEGH KASFCLEDTN CPTGLQRRYA CANFGEQGVT ENSBTAP00000027838/1-536 EVFTHYDLLT LNGSKVAEGH KASFCLEDTN CPTGMQRRYA CANFGEQGVT ENSTTRP00000005586/1-755 EVFTHYDLLT LNGSKVAEGH KASFCLEDTS CPTGMQRRYA CANFGEQGVT bmy_20143T0/1-723 EVLTHYDLLT LNGSKVAEGH KASFCLEDTN CPKGMWF--- ------PGVT BACU012421/1-696 EVFTHYDLLT LNGSKVAEGH KASFCLEDTN CPKGMQRRYA CANFGEQGVT 701 750 ENSP00000260702/1-756 VGCWDTYRHD IDCQWVDITD VGPGNYIFQV IVNPHYEVAE SDFSNNMLQC ENSBTAP00000027838/1-536 VGCWDTYRHD IDCQWVDITD VGPGDYIFQV VVNPKFEVAE SDFSNNMMRC ENSTTRP00000005586/1-755 VGCWDTYRHD IDCQWVDITD VGPGDYIFQV VVNPKLEVAE SDFSNNVMRC bmy_20143T0/1-723 VGCWDTYRHD IDCQWVDITD VGPGDYIFQV VVNPKLEVAE SDFSNNVMRC BACU012421/1-696 VGCWDTYRHD IDCQWVDITD VGPGDYIFQV VVNPKLEVAE SDFSNNVMRC 751 800 ENSP00000260702/1-756 RCKYDGHRVW LHNCHTGNSY PANAELSLEQ EQRLRNNLI ENSBTAP00000027838/1-536 RCKYDGQRVW LHNCHTGDSY RANTELSQEQ EQRLRNNLI ENSTTRP00000005586/1-755 RCKYDGQRVW LHDCRTGDAH RANTEHSPEQ EQRLRNNLI bmy_20143T0/1-723 RCKYDGQRVW LHDCHTGDSY RANTELSLEQ E-RLRNNLI BACU012421/1-696 RCKYDGQRVW LHDCHTGDCG PL-------- ---------