KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:58 2014 Check: 00 .. Name: BACU015385/1-750 Len: 875 Check: 4212 Weight: 1.00 Name: ENSP00000267485/1-774 Len: 875 Check: 3993 Weight: 1.00 Name: ENSBTAP00000027817/1-760 Len: 875 Check: 3162 Weight: 1.00 Name: bmy_14455T0/1-667 Len: 875 Check: 4596 Weight: 1.00 Name: ENSTTRP00000012803/1-750 Len: 875 Check: 6533 Weight: 1.00 // 1 50 BACU015385/1-750 ------MAVS SWSPQLGFGS EKALQAAAVS TGPSLELCT- FRSTLGSSVA ENSP00000267485/1-774 ---------- ---------- --------MR GPIVLHICLA FCSLLLFSVA ENSBTAP00000027817/1-760 ---------- ---------- --------MS RPIVLHICLA FCSLLLLNFA bmy_14455T0/1-667 MNWVIHVSKD SITGIVNSTN LCACFSSTMS RPVVLHICRA FCSLLLLSFA ENSTTRP00000012803/1-750 ---------- ---------- --------MS RPVVLHICLA FCSLLLLGFA 51 100 BACU015385/1-750 AAAL------ ---EQLFVVE QSLQSDYFKC NEEAKTFLKD VAIAVKKLE- ENSP00000267485/1-774 TQCLAFPKIE RRREIAHVHA EKGQSDKMNT DD-----LEN SSVTSKQTPQ ENSBTAP00000027817/1-760 AQCLAFPNLE -RREIVLLHA EKGQSERLNT DD-----LEN DSVTSN-TP- bmy_14455T0/1-667 TQCLAFPNVE -RREIAPVHE DKGQSERLNI DE-----LEN NSITSKYTL- ENSTTRP00000012803/1-750 TQCLAFPNVE -RREVAPVHE EKGQSERLNT DD-----LEN NSITSKYTL- 101 150 BACU015385/1-750 --EMRKSTID LLEIESMELS RLYFLLETLP TSVSRELKEC VGDARRLNLV ENSP00000267485/1-774 LVVSEDPMMM SAVPSATSLN KAF------- -SINKETQPG QAGLMQTERP ENSBTAP00000027817/1-760 --VSGDPMIV LAGPSTMSLN KVF------- -PSNKETSPV GAGLMQADGS bmy_14455T0/1-667 --VSEEPMIV LAGPSTMSLN KVF------- -PSNKETPPI GAGLTQPDSP ENSTTRP00000012803/1-750 --VSEEPMIV LAGPSTMSLS KVF------- -RSNKETPPI GAGLTQPDSP 151 200 BACU015385/1-750 AINQLHMKIT RINDEIEFLK KKILDLKKIN KALGEQQEEL ARHYENVVLS ENSP00000267485/1-774 GVSTPTESGV PSAEEV-FGS SQ---PERIS PESGLAKAML TIAITATP-S ENSBTAP00000027817/1-760 NIYTATEPEV PAGEEV-FGS SQ---PERMS PESRPSKATL TNPVMPTA-S bmy_14455T0/1-667 GIYTATEPVI SAGEEV-FGS SQ---PERMS PESRLSKAML TNPITPTA-S ENSTTRP00000012803/1-750 GVYTATEPVI SAGEEV-FGS SQ---PERMS PESGLSKAML MNPITPTA-S 201 250 BACU015385/1-750 LNHVMKEKAT TTVYINETYT KINSEKKELE LQKRYIQEVE EQM-EREKAE ENSP00000267485/1-774 LTVDEKEELL TSTNFQPIVE EIT------E TTKGFLKYMD NQSFATESQE ENSBTAP00000027817/1-760 LNIDEREEPS RGTIIQPTVE GTT------E ATQGFLSYVD DQLFATESPE bmy_14455T0/1-667 LNIDDKEEPS RSTIIQPIVE GTT------E ATQGFLHYVD DQLFATENQA ENSTTRP00000012803/1-750 LNIDEKEESS RSTIIQPIVE GTT------E ATQGFLHYVD DQLFATENQA 251 300 BACU015385/1-750 YLGKKQNLSQ EIDEYKKLCE LKRKETYKKK KELD------ ---------- ENSP00000267485/1-774 GVGLGHSPSS YVNTKEMLTT NPKTEKFEAD TDHRTTSFPG AESTAGSEPG ENSBTAP00000027817/1-760 GLSLGHSPLS LVNTKEMLTT SPRTEKFEAN PEHKTTSFPG SKLTAGTE-- bmy_14455T0/1-667 GVSLGHSPLS YVNAKEMLTT RPRTEKFEAD PEHKTTSFPG VEPTAGAE-- ENSTTRP00000012803/1-750 GVSLGHSPLS YVNAKEMLTT RPRTEKFEAD PEHKTTSFPG AEPTAGAE-- 301 350 BACU015385/1-750 --------RL RLKMTKIRET -VTTSRVVLS DHNLEISRLQ ESIRHWEQQV ENSP00000267485/1-774 SLTPDKEKPS QMTADNTQAA -ATKQPLETS EYTLSVEPET DSLLGAPEVT ENSBTAP00000027817/1-760 --------PS QMTADNTQAT AATKHWLPTS ESILSVEPET DSLLGAPEVT bmy_14455T0/1-667 --------PS QMTADNTQAA -ATKHWLATS ESTLSVEPET DSLLGAPEVT ENSTTRP00000012803/1-750 --------PS QMTDDNTQAT -ATKHWLATS ESTLSVEPET DSLLGAPEVT 351 400 BACU015385/1-750 EDMKKSCKIL EDKMLFFRNN KEKLDDASNF EKNEL----L LKIKQMAEKL ENSP00000267485/1-774 VSV--STAVP AASALSDEWD DTKLESVSRI RTPKLGDNEE TQVRTEMSQT ENSBTAP00000027817/1-760 TSV--STAVA AAPVISDEWD DTKLESVSQI KTPKLGDNTE TQVRMEISQT bmy_14455T0/1-667 VSV--STAVP AVSVVSVEWD DTKLESVSQI KTPKLGDNTE TQASMETSQT ENSTTRP00000012803/1-750 VSV--TIAVP AVSVVSVEWD DTKLESVSQI KTPKLGDNTE TQVRKETSQT 401 450 BACU015385/1-750 HKCHFKNKDL REKLHTVTRQ YKIVLN-EED KVFMQKQKMY SENQKQLAFI ENSP00000267485/1-774 AQVSH---EG MEGGQPWTEA AQVALGLPEG ETHTGTALLI AHGNERSPAF ENSBTAP00000027817/1-760 TQAPDIGMEG MEEGKALTEA ADVSLKLPEM ETHMETTLPM AHGGERAS-- bmy_14455T0/1-667 TQATSNGMEG MEGGETLTEA ADVALRLPEG EAHRGTALLI AHGDERSSAF ENSTTRP00000012803/1-750 TQATSNGMEG MKGGETLTEA ADVALRLPEG EAHRGTALLI AHGDERSSAF 451 500 BACU015385/1-750 AQKENF---- -LSKRKVDIK NMEEGLITLN ELHRATKEVY RKQIKVLNDN ENSP00000267485/1-774 TDQSSFTPTS LMEDMKVSIV NL---LQSTG DFTESTKE-- -------NDA ENSBTAP00000027817/1-760 -DQSSVTPTS PMGDTKVSVM NL---VQDTA DFVESTKE-- -------NGA bmy_14455T0/1-667 TDQSSFTPTS PVEGMKVSVE NL---VQNTA DFMESTKE-- -------NNA ENSTTRP00000012803/1-750 TDQSSFTPTS PVEGMKVSVE NL---VQNTA DFMESTKE-- -------NNA 501 550 BACU015385/1-750 LERKNQRCII TQWKIACLLK KHARWTNMIR AETQEIIDKI QDAELRRSEL ENSP00000267485/1-774 LFFLETTVSV SVYESEADQL LGNTMKDII- --TQEMTTAV QEPDATLSMV ENSBTAP00000027817/1-760 M-FLETTVSI SEYESEVHQP LGNRFKDII- --TQEMTTAV QAAEATVSLV bmy_14455T0/1-667 RLFLETTVSI SEYESEAYQP LGNTFKDII- --TQEMTTAV QEAEATLSSV ENSTTRP00000012803/1-750 MLFLETTVSI SEYESEAYQP LGNTLKGII- --TQEMTTAV QEAEATLSSV 551 600 BACU015385/1-750 LQETSFRENE INEFLAQIEQ LTLELKQEEE EFVAKEKKLI RELSKYEQRF ENSP00000267485/1-774 TQE-QVA--- ---------- -TLELIRDSG KTEEE----- KEDPSPVSDV ENSBTAP00000027817/1-760 TQEQQVA--- ---------- -TLEVTRGED ETKGG----- RELPSATVDA bmy_14455T0/1-667 MQEQQVS--- ---------- -TLEVTGGDV ETEGG----- KELPSATADA ENSTTRP00000012803/1-750 MQEQQVS--- ---------- -TLEVIRGDV ETEGG----- KELPSATADA 601 650 BACU015385/1-750 AEETQINKEK EGELVECLPQ LQVAEEEYMD KNRQFENLVD ILTGRDWSML ENSP00000267485/1-774 PGVTQLSRRW E-PLATTIST TVVPLS--FE VTPTVEEQMD TVTGPNEE-F ENSBTAP00000027817/1-760 PRATQLSRRW E-PLATVVST TPIPVS--FK VTPAVEDVMD TVTGPNEELF bmy_14455T0/1-667 PGVTQLSRRW E-PLATVVST TPVPLS--FE VTPAVEDLMD TVTGPNEELF ENSTTRP00000012803/1-750 PGVTQLSRRW E-PLATVVST TPVPLS--FE ITPAVEDLMD TVTGPNEELF 651 700 BACU015385/1-750 RKVLFRSVIL VNSYEDKDKW AKVVGVEGVN EMGSVELYAI TVGFMFEQNK ENSP00000267485/1-774 TPVLGSPVTP PGIMVGEPSI SPALP----A LEASSERRTV VPSITRVNTA ENSBTAP00000027817/1-760 TPILGSPVTP PGITEEAPST SPALA----D PEASSERRTA APSFSYVNTA bmy_14455T0/1-667 TPIVGSPVTP PGMMEEAPST SPALA----D PEASSERRAA APSISYVNTA ENSTTRP00000012803/1-750 TPIVGSPVTP PGIMEEAPST SPALA----D PEASSE-RTA APSISYVNTA 701 750 BACU015385/1-750 EKQELKQLRD HE-------- ---------- ----SHKIKA HFEVLKHLEN ENSP00000267485/1-774 ASYGLDQLES EEGQEDEDEE DEEDEDEEEE DEEEDEEDKD ADSLDEGLDG ENSBTAP00000027817/1-760 ASYGLDQLES EEGEDDEDEE DEEEEDEEEE DEEEDEEDKD ADSLDEAL-G bmy_14455T0/1-667 ASYGLDQLES ---------- ---------- ---------- ---------- ENSTTRP00000012803/1-750 ASYGLDQLES EEGEEDED-- ---------- --EEDEEDKD ADSLDETLAG 751 800 BACU015385/1-750 EIYVHDLKTD DLLLENKRLK E--------- -----ELVES GNETLQEIKN ENSP00000267485/1-774 DTELPGFTLP GITSQEPGLE EGNMDLLEGA TYQVPDALEW EQQNQGLVRS ENSBTAP00000027817/1-760 DTELPGFTLP GITSQEPGLE QENVVSLEGV TFQVPDAIQW EQQNQGLVRS bmy_14455T0/1-667 ---------- ---------- ---------- -----EGIGF EHEKRCLEHS ENSTTRP00000012803/1-750 DTELPGFTLP GIMSQEPGLQ QGNVVSLEGA TYQVPDTIEW EQQSQGLVRS 801 850 BACU015385/1-750 LIEKLYERDE KIEQISIWLQ EDIEEMRFLM EQESQTDLLS K--------- ENSP00000267485/1-774 WMEKLKDKAG YMSGMLVPVG VGIAGALFIL GALYSIKVMN RRRRNGFKRH ENSBTAP00000027817/1-760 WMEKLKDKAG YMSGMLVPVG VGIAGALFIL GALYSIKVMN RRRRNGFKRH bmy_14455T0/1-667 CTSTNQKSGN ITKGRLINQH FGRE------ ---------- ---------- ENSTTRP00000012803/1-750 WMEKLKDKAG YMSGMLVPVG VGIAGALFIL GALYSIKVMN RRRRNGFKRH 851 900 BACU015385/1-750 ---------- ---------- ----- ENSP00000267485/1-774 KRKQREFNSM QDRVMLLADS SEDEF ENSBTAP00000027817/1-760 KRKQREFNSM QDRVMLLADS SEDEF bmy_14455T0/1-667 ---------- ---------- ----- ENSTTRP00000012803/1-750 KRKQREFNSM QDRVMLLADS SEDEF