KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:11 2014 Check: 00 .. Name: ENSP00000364893/1-803 Len: 1352 Check: 484 Weight: 1.00 Name: BACU017406/1-1100 Len: 1352 Check: 3464 Weight: 1.00 Name: ENSTTRP00000009830/1-731 Len: 1352 Check: 9116 Weight: 1.00 Name: bmy_03971T0/1-471 Len: 1352 Check: 1381 Weight: 1.00 Name: ENSBTAP00000027619/1-862 Len: 1352 Check: 410 Weight: 1.00 // 1 50 ENSP00000364893/1-803 MNSAEQTVTW LITLGVLESP KKTISDPEGF LQASLKDGVV LCRLLERLLP BACU017406/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 MNSAEQTVTW LITLGVLESP KKTISDPEGF LQASLKDGVV LCRLLERLLP 51 100 ENSP00000364893/1-803 GTIEKVYPEP RSESECLSNI REFLRGCGAS LRLELLFPPS QPPQHLVTTI BACU017406/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009830/1-731 ------YPEP RSKGECLSNI HEFLRGCG-S LRLEXXXXXX XXXXXXXXXX bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 GTIEKFYQEY RLSEESLFLI NEFMRACDQS LKSE------ ---------- 101 150 ENSP00000364893/1-803 LLSASTFDAN DLYQGQNFNK VLSSLVTLNK VTADIGLGSD SVCARPSSHR BACU017406/1-1100 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009830/1-731 XXXXXTFDAN DLYQGQNFNK VLSSLVTLNK VTADIGLGSD SVCARPSSHR bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 -----TFDAN DLYQGQNFNK VLSSLVTLNK VTADIGLGSD SVCARPSSHR 151 200 ENSP00000364893/1-803 IKSFDSLGSQ SLHTRTSKLF QGQYRSLDMT DNSNNQLVVR AKFNFQQTNE BACU017406/1-1100 ---------- ---------- --------MT DNSNNQLVVR AKFNFQQTNE ENSTTRP00000009830/1-731 IKSFDSLGPQ PSHGRTSKLF QGQYRSLDMT DNSNNQLVVR AKFNFQQTNE bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 IKSFDSLGPQ PAHGRTSQLF QGQYRSLDMT DNSNNQLVVR AKFNFQQTNE 201 250 ENSP00000364893/1-803 DELSFSKGDV IHVTRVEEGG WWEGTLNGRT GWFPSNYVRE VKAS-EKPVS BACU017406/1-1100 DELSFAKGDV IHVTRVEEGG ---------- CCLENPYSEA LKEDLEKPVS ENSTTRP00000009830/1-731 DELSFAKGDV IHVTRVEEGG WWEGTHSGRT GWFPSNYVRE IKPS-EKPVS bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 DELSFAKGDV IHVTRVEEGG WWEGTHNGRT GWFPSNYVRE VKPS-EKPVS 251 300 ENSP00000364893/1-803 PKSGTLKSPP KGFDTTAINK SYYNV----- ---------- ---------- BACU017406/1-1100 PKSGALKSPP KGFDTTAINK SYYNVGLLGG KLSTYGATFS SCILMWNVGF ENSTTRP00000009830/1-731 PKSGALKSPP KGFDTTAINK SYYNV----- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 PKSGTLKSPP KGFDTTAINK SYYNV----- ---------- ---------- 301 350 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 FSGGGSSEQC TLNPGLHQYS LSMDSKWGIV CFYSLEYNEK ASQDRFSVLT ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000364893/1-803 ---------- ---------- ---------- ------VLQN ILETENEYSK BACU017406/1-1100 SGVSARGPYE AQAHYGSHPD GSSAPCALWG AVPSSPVLQN ILETENEYSK ENSTTRP00000009830/1-731 ---------- ---------- ---------- ------VLQN ILETENEYSK bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ------VLQN ILETENEYSK 401 450 ENSP00000364893/1-803 ELQTVLSTYL RPLQTSEKLS SANISYLMGN LEEICSFQQM LVQSLEECTK BACU017406/1-1100 ELQTVLSTYL RPLQTTEKLS SANTSYLMGN LEEICSFQQM LVQSLEECTK ENSTTRP00000009830/1-731 ELQTVLSTYL RPLQTTEKLS SANTSYLMGN LEEICSFQQM LVQSLEECTK bmy_03971T0/1-471 ---------- ---------- -------MGN LEEICSFQQM LVQSLEECTK ENSBTAP00000027619/1-862 ELQTVLSTYL RPLQTSEKLS SANTSHLMGN LEEICSFQQM LVQSLEECTK 451 500 ENSP00000364893/1-803 LPEAQQRVGG CFLNLMPQMK TLYLTYCANH PSAVNVLTEH SEELGEFMET BACU017406/1-1100 MPEAQQRVGG CFLNLMPQMK TLYLAYCANH PSAVSVLTEH SSD------- ENSTTRP00000009830/1-731 MPEAQQRVGG CFLNLMPQMK TLYLAYCANH PSAVSVLTEH SEELGEFMEM bmy_03971T0/1-471 MPEAQQRVGG CFLNLMPQMK TLYLAYCANH PSAVSVLTEH SEELGEFMEM ENSBTAP00000027619/1-862 MPEAQQRVGG CFLSLMPQMK TLYLTYCANH PSAVSVLTEH SEELGEFMEL 501 550 ENSP00000364893/1-803 KGASSPGILV LTTGLSKPFM RLDKYPTLLK ELERHMEDYH TDRQDIQKSM BACU017406/1-1100 ---------P LDSG------ --------LK ELD-----YH PDRQDIQKSM ENSTTRP00000009830/1-731 KGASSPGILV LTTGLSKPFM RLDKYPALLK ELERHMEXXX XXXXXXXXXX bmy_03971T0/1-471 KGASSPGILV LTTGLSKPFM RLDKYPALLK ELERHME--- ---------- ENSBTAP00000027619/1-862 KGASSPGILV LTTGLSKPFM RLDKYPALLK ELERHMEDYH PDRQDIQKSM 551 600 ENSP00000364893/1-803 AAFKNLSAQC QEVRKRKELE LQILTEAIRN WEGDDIKTLG NVTYMSQVLI BACU017406/1-1100 TAFKNLSAQC QEVRKRKELE LQILTEAIRS WEGDDIKTLG NVIYMSQVLI ENSTTRP00000009830/1-731 XXXXXXXAQC QEVRKRKELE LQILTEAIRS WEGDDIKTLG NVIYMSQVLI bmy_03971T0/1-471 -------AQC QEVRKRKELE LQILTEAIRS WEGDDIKTLG NVIYMSQVLI ENSBTAP00000027619/1-862 TAFKNLSAQC QEVRKRKELE LQILTEAIRS WEGEDIKTLG SVLYMSQVLI 601 650 ENSP00000364893/1-803 QCAGSEEKNE RYLLLFPNVL LMLSASPRMS GFIYQGKLPT TGMTITKLED BACU017406/1-1100 QCAGSE---- ---------- ---------- -----GKLPT TGMTITKLED ENSTTRP00000009830/1-731 QCAGSEEKNE RYLLLFPNIL LMLSASPRMS GFIYQGKLPT TGMTITKLED bmy_03971T0/1-471 QCAGSEEKNE RYLLLFPNIL LMLSASPRMS GFIYQLRSSP ---------- ENSBTAP00000027619/1-862 QCAGSEEKNE RYLLLFPNIL LMLSASSRMS GFIYQGKLPT TGMTITKLED 651 700 ENSP00000364893/1-803 SENHRNAFEI SGSMIERILV SCNNQQDLQE WVEHLQKQTK VTSVGNPTIK BACU017406/1-1100 SENHRNAFEI SGSMIERILV SCSDQQDLHE WVDRLQKQTK VTSAGNPAVK ENSTTRP00000009830/1-731 SENHRNAFEI SGSMIERILV SCSNQQDLHE WVDHLQKQTK VTS------- bmy_03971T0/1-471 ---------- PGSMIERILV SCSDQQDLHE WVDRLQKQTK VTSAGNPAVK ENSBTAP00000027619/1-862 SENHRNAFEI SGSMIERILV SCSNQQDLHE WVDRLQKQTK AASAGNPSSK 701 750 ENSP00000364893/1-803 PHSVPSHTLP SHPVTPSSKH ADSKPAPLTP AYHTLPHPSH HGTPHTTINW BACU017406/1-1100 PHPVPSHTLP SHSITPSSKH ADSKPVPLTP AYHTLPHPSH HGTPHTTINW ENSTTRP00000009830/1-731 --------LP SHSVTPSSKH ADSKPVPLTP AYHTLPHPSH HGTPHTTINW bmy_03971T0/1-471 PHPVPSHTLP SHSITPSSKH ADSKPVPLTP AYHTLPHPSH HGTPHTTINW ENSBTAP00000027619/1-862 PHSVPSHTLP SHSITPSSKH ADSKPAPLTP AYHTLPHPSH HGTPHTTINW 751 800 ENSP00000364893/1-803 GPLEPPKTPK PWSLSCLRPA PPLRPSAALC YKEDLSKSPK TMKKLLPKRK BACU017406/1-1100 GPLEPPKTPK PWSLSCLRPA PPLRPSAALC YKEDLSKSPK TMKKLLPKRK ENSTTRP00000009830/1-731 GPLEPPKTPK PWSLSCLRPA PPLRPSAALC YKEDLSKSPK TMKKLLPKRK bmy_03971T0/1-471 GPLEPPKTPK PWSLSCLRPA PPLRPSAALC YKEDLSKSPK TMKKLLPKRK ENSBTAP00000027619/1-862 GPLEPPKTPK PWSLSCLRPA PPLRPSAALC YKEDLSKSPK TMKKLLPKRK 801 850 ENSP00000364893/1-803 PERKPSDEEF ASRKSTAALE EDAQILKVIE AYCTSAKTRQ TLNSTWQGTD BACU017406/1-1100 PERKPSDEEF ALRKSTAALE EDAQILKVIE AYCTSAKTRQ TLNSTWQGTD ENSTTRP00000009830/1-731 PERKPSDEEF ALRKSTAALE EDAQILKVIE AYCTSAKTRQ TLNSTWQGTD bmy_03971T0/1-471 PERKPSDEEF ALRKSTAALE EDAQILKVIE AYCTSAKTRQ TLNSS----- ENSBTAP00000027619/1-862 PERKPSDEEF ALRKSTAALE EDAQILKVIE AYCTSAKTRQ TLNSTWQGTD 851 900 ENSP00000364893/1-803 LMHNHVLADD DQPSLDSLGR RSSLSRLEPS DLSEDSDYDS IWTAHSYRMG BACU017406/1-1100 LMHNHVLADD DQSSLDSLGR RSSLSRLEPS DLSEDSDYDS IWTAHSYRMG ENSTTRP00000009830/1-731 LMHNHVLADD DQSSLDSLGR RSSLSRLEPS DLSEDSDYDS IWTAHSYRMG bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 LMHNHVLADD DQSSLDSLGR RSSLSRVEPS DFSEDSDYDS IWTAHSYRMG 901 950 ENSP00000364893/1-803 STSR------ ---------- ---------- ---------- ------KSCC BACU017406/1-1100 STSRSRKESA PQVLLPEEEK IIVEETKSNG QTVIEEKSLV DTVYALKDEV ENSTTRP00000009830/1-731 STSR------ ---------- ---------- ---------- ------KSCC bmy_03971T0/1-471 KCSR--KESA PQVLLPEEEK IIVEETKSNG QTVIEEKSLV DTVYALKDEV ENSBTAP00000027619/1-862 STSRSRKESA PQVLLPEEEK IIVEETKSNG QTVIEEKSLV DTVYALKDEV 951 1000 ENSP00000364893/1-803 SYISHQN--- ---------- ---------- ---------- ---------- BACU017406/1-1100 QELRQDNKKM KKSLEEEQRA RKDLEKLRVC LGPDVDLPTL DLVTRIADFL ENSTTRP00000009830/1-731 SYISHQN--- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 QELRQDNKKM KKSLEEEQRA RKDLEKLVRK VLKNMNDPAW DETNL----- ENSBTAP00000027619/1-862 QELRQDNKKM KKSLEEEQRA RKDLEKLVRK VLKNMNDPAW DETNL----- 1001 1050 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 YLALCSLVPG PEEVVFGDFW VWEHWKINTN RKQSLGAGSG RKGCQARPPL ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 RLPSVDRRLL SRSPGCEGAV LGNADRGRRA PLQRTLQTVC DIPLYDICDY ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 NVTRDRCQEL GCCFYKGICY EKAVPTYVQV FSALIVIIAG AFIITIIYRV ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 VQESRREKEV PTEVPLSSKS SSKVEMVPSG ERPAGSKSPS TEPSHKSPES ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 GREEGKAAGM TSFTSSAVSS GEDTRQPCQP FCKLYLFFSL DKSLSSPAGR ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 GGFARWILPS AQVSRPQGHS LLETSPSLSC PPCPRRHILP GRGQRECRLS ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000364893/1-803 ---------- ---------- ---------- ---------- ---------- BACU017406/1-1100 RSPGAGWRRE SVSFCGACSC EVSPRCSGFQ EAQLLVWSLT LLGGLWPEPL ENSTTRP00000009830/1-731 ---------- ---------- ---------- ---------- ---------- bmy_03971T0/1-471 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027619/1-862 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000364893/1-803 -- BACU017406/1-1100 AG ENSTTRP00000009830/1-731 -- bmy_03971T0/1-471 -- ENSBTAP00000027619/1-862 --