KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:33:10 2014 Check: 00 .. Name: ENSP00000272139/1-263 Len: 343 Check: 8684 Weight: 1.00 Name: ENSBTAP00000027612/1-235 Len: 343 Check: 4474 Weight: 1.00 Name: bmy_03329T0/1-317 Len: 343 Check: 3366 Weight: 1.00 Name: ENSTTRP00000013450/1-165 Len: 343 Check: 3645 Weight: 1.00 // 1 50 ENSP00000272139/1-263 MFGSSRGGVR GGQDQFNWED VKTDKQRENY LGNSLMAPVG RWQKGRDLTW ENSBTAP00000027612/1-235 MFGSSRGGVR GGQDQFSWED VKTDKQRENY LGNSLMAPVG RWQKGRDLTW bmy_03329T0/1-317 MFGSSRGGVR GGQDQFSWED VKTDKQRENY LGNSLMAPVG RWQKGRDLTW ENSTTRP00000013450/1-165 ---------- ---------- ---------- --NSLMAPVG RWQKGRDLTW 51 100 ENSP00000272139/1-263 YAKGRAPCAG PSREEELAAV REAEREALLA ALG------- ---------- ENSBTAP00000027612/1-235 YAKGRANSAG LSREQELAAV RQAEQEALMA ALG------- ---------- bmy_03329T0/1-317 YAKGRAHGAG LSREQELAAV RQAEQEALMA ALGRGRGETR SSLKLTRGPR ENSTTRP00000013450/1-165 YAKGREHSAG LSREQELAAV RQAEQEALMA ALG------- ---------- 101 150 ENSP00000272139/1-263 --YKNVKKQP TGLSKEDFAE VCKREGGDPE EKGVDRLLGL GSASGSVGRV ENSBTAP00000027612/1-235 --YKNVKKQP TGLSKEDFVE VCKREGGDP- EKGVDRLLGL GSSSGSVGRV bmy_03329T0/1-317 RGYKNVRKQP TGLSKEDFVE VCKREGGDP- EKGVDRLLGL GSSSGSAGRV ENSTTRP00000013450/1-165 --YKNVRKQP TGLSKEDFVE VCKREGGDP- EKGVDRLLGL GSSSGSAGRV 151 200 ENSP00000272139/1-263 AMSREDKEAA KLGLSVFT-- ---------- ---------- ---------- ENSBTAP00000027612/1-235 ALSREDKEAA KLGLSVFT-- ---------- ---------- ---------- bmy_03329T0/1-317 ALSREDKEAA KLGLSVFTVT TPKHPGIPWW GGGRSECLFL LRAMGAGRLS ENSTTRP00000013450/1-165 ALSREDKEAA KLGLSVFT-- ---------- ---------- ---------- 201 250 ENSP00000272139/1-263 ---------- ---------- ---------H HRVESGGPGT SAASARRKPR ENSBTAP00000027612/1-235 ---------- ---------- ---------H HRVESSRPGT SLALAKKKLR bmy_03329T0/1-317 LGIPSQLLAG SRRSVCRGAP HTPSGFSRQH HRVESSRTGT SPASAKKKPR ENSTTRP00000013450/1-165 ---------- ---------- ---------H HRVESSRTGT SPASTKKKPR 251 300 ENSP00000272139/1-263 AEDQTESSCE SHRKSKKEKK KKKKRKHKKE KKKKDKEHRR PAEATSSPTS ENSBTAP00000027612/1-235 SEEKVEPGPE SHRKSRKEKK KK---RHKKE KRKKEKDRGR RLDSSLAPAP bmy_03329T0/1-317 SEEKVEPGPE SHKKSRKEKK KKK--RHKKE KRRKEKEHGR GPDSSQPPAP ENSTTRP00000013450/1-165 SEEKVEP--E SHRKSRKEKK KKK--RHKKE KR-------- ---------- 301 350 ENSP00000272139/1-263 PERPRHHHHD SDSNSPCCKR RKRGHSGDRR SPSRRWHDRG SEA ENSBTAP00000027612/1-235 IQ------HD SDSST-CCKK R-RHDSD--- ---------- --- bmy_03329T0/1-317 IQ------HD SDSST-CCKR KHRHDSD--- ---------- --- ENSTTRP00000013450/1-165 ---------- ---------- ---------- ---------- ---