KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:33:06 2014 Check: 00 .. Name: ENSTTRP00000007867/1-814 Len: 869 Check: 8671 Weight: 1.00 Name: bmy_15595T0/1-846 Len: 869 Check: 5907 Weight: 1.00 Name: ENSP00000403902/1-828 Len: 869 Check: 6353 Weight: 1.00 Name: ENSBTAP00000027570/1-830 Len: 869 Check: 2977 Weight: 1.00 // 1 50 ENSTTRP00000007867/1-814 ---------- ---------- ---------- ----MDSEAF QSSRNLLDLN bmy_15595T0/1-846 RPVLRSPQPE PEPEEDPRCQ DLPRIRAPLR PAGTMDSEAF QSSQNLLDLN ENSP00000403902/1-828 ---------- ---------- ---------- ----MDSEAF QSARDFLDMN ENSBTAP00000027570/1-830 ---------- ---------- ---------- ----MDSEAF QSSGDILDLK 51 100 ENSTTRP00000007867/1-814 FQSLAAKHMD LKNTELDTAA AKVDELTKQL ESLWSDLPAA SLGSQARAPA bmy_15595T0/1-846 LQS--TKHVD LKHMELDMAA AKVDELTKQL ESLWSDSPAA PLGWQARAPA ENSP00000403902/1-828 FQSLAMKHMD LKQMELDTAA AKVDELTKQL ESLWSDSPAP P-GPQAGPPS ENSBTAP00000027570/1-830 FQSLAMKHMD LKQMELDTAA AKVDELTKQL ESLWSDSPAA PLGSQAAAPA 101 150 ENSTTRP00000007867/1-814 RLSRYSLSPV PEPLGCRGSP RKATTDGADI SFGRSESAPA LLPYSSLSPK bmy_15595T0/1-846 RLSGYSLSPV PEPLGSRGSP RKATTDGADT SFRRSESAPA QLPYGSLSPK ENSP00000403902/1-828 RPPRYSSSSI PEPFGSRGSP RKAATDGADT PFGRSESAPT LHPYSPLSPK ENSBTAP00000027570/1-830 RLPRYSTSPV PEPLGSRGSS RKATTDGADT PFGRSESAPA LLPYSSLSAK 151 200 ENSTTRP00000007867/1-814 GRPSSPRTQF YLQPDAYSSL DRAPSPRPRT FDGAGSPHGR SPSPR--PGP bmy_15595T0/1-846 GRPSSPRTQL YLQPDAYGTL DRAPSPRPRA FDGAGSPHGR APSPR--PGP ENSP00000403902/1-828 GRPSSPRTPL YLQPDAYGSL DRATSPRPRA FDGAGSSLGR APSPRPGPGP ENSBTAP00000027570/1-830 GRPSSPRTQL YLQPDAYGSL DRSPSPRPRA FDGAGSPHGR APSPR--PGP 201 250 ENSTTRP00000007867/1-814 LRQQGSPTPF DFLARARSPR VSPLAEGPQA FFPERGPSPR IPTAAYDAPT bmy_15595T0/1-846 LRQQGPPTPF DFLGRVRSPR VSPLGEGPQA FFPERGPSPR APTAAYDAPT ENSP00000403902/1-828 LRQQGPPTPF DFLGRAGSPR GSPLAEGPQA FFPERGPSPR PPATAYDAPA ENSBTAP00000027570/1-830 LRQQGPPTHF DFLGRSGSPR GSPLAEGPQA FFPERGPSPR PGTSAYDAPA 251 300 ENSTTRP00000007867/1-814 -AFGSPLLGP GVSAFAPPLR AQXXXXXXXR PPKAWNESDL DVAYEKKSSQ bmy_15595T0/1-846 -AFGSPLLGP GVSAFAPPLR TQDDLTLRRR SPKAWNESDL DVAYEKKPSQ ENSP00000403902/1-828 SAFGSSLLGS GGSAFAPPLR AQDDLTLRRR PPKAWNESDL DVAYEKKPSQ ENSBTAP00000027570/1-830 -AFGSPLLGA GGSAFAPPLR AQDDLTLRRR PPKAWNESDL DVAYEKKPSQ 301 350 ENSTTRP00000007867/1-814 TASYERLDVF ARPASPGLQL LPWRESSLDG LGAPGKDNFT SATLPRNYKV bmy_15595T0/1-846 TASYERLDVF ARPASPGLQL LPWRESSLDG LGATRKDNFT SATLPRNYKV ENSP00000403902/1-828 TASYERLDVF ARPASPSLQL LPWRESSLDG LGGTGKDNLT SATLPRNYKV ENSBTAP00000027570/1-830 TASYERLDVF PRPASPGLQL LPWRESSLDG LGATGKDNFT SATLPRNYKV 351 400 ENSTTRP00000007867/1-814 SLLTNDRRSD MDSYRRSLGS AGSSGTLPRS WQPVSRIPMP PTSPQPRSAP bmy_15595T0/1-846 FPLTNDRRSD VDSYRRSLGS AGSSGTLPRS WQPVSRIPMP PSSPQPRSAP ENSP00000403902/1-828 SPLASDRRSD AGSYRRSLGS AGPSGTLPRS WQPVSRIPMP PSSPQPRGAP ENSBTAP00000027570/1-830 SPLANDRRSD VGSYRRSLGS TGPSGTLPRS WQPVSRIPMP PSSPQPRSAP 401 450 ENSTTRP00000007867/1-814 RHRPIPLSMI FKLQNAFWEH GASRAMLPGS PIFSRAPPPK LLPQPQLPPQ bmy_15595T0/1-846 RQRPIPLSMI FKLQNAFWEH GASRAMLPGS PIFSRAPPPK LLLQPQLPPQ ENSP00000403902/1-828 RQRPIPLSMI FKLQNAFWEH GASRAMLPGS PLFTRAPPPK LQPQPQPQPQ ENSBTAP00000027570/1-830 RQRPIPLSMI FKLQNAFWEH GASRAMLPSS SIFSRAPPPK MPPQPQTPPQ 451 500 ENSTTRP00000007867/1-814 SQPQL----- -------QPQ PQLQALAPVP QPPQETWSAV SEGFPKPPTE bmy_15595T0/1-846 S--------- -------QPQ LQLQALAPVP QPPQETWSPV SEGLPKPPTE ENSP00000403902/1-828 PQSQPQPQLP P------QPQ TQPQTPTPAP QHPQQTWPPV NEGPPKPPTE ENSBTAP00000027570/1-830 PQPQPQPQLP PQPQPQLQPQ PQPQAPAPAP QAPQQTWAPV SEGLAKPPAD 501 550 ENSTTRP00000007867/1-814 LEPEPELEGL LTPGLEAGDA DEGAVTRPLS PTRLQPALPP EAQSVPELEE bmy_15595T0/1-846 LEPEPELEGL LTSGLEAGDA DEDAVARPLS PTRLQPALPP EAQSVPELEE ENSP00000403902/1-828 LEPEPEIEGL LTPVLEAGDV DEGPVARPLS PTRLQPALPP EAQSVPELEE ENSBTAP00000027570/1-830 LEPEPELEGL LTPVLEVGDA DEGAVTRPLS PTRLQPALPP EAQSVPELEE 551 600 ENSTTRP00000007867/1-814 VARVLAEIPR PLKRRGSMEQ SPTIALPPTH KKQYQQIISR LFHRHG--GP bmy_15595T0/1-846 VARVLAEIPR PLKRRGSMEQ SPTVALPPTH KKQYQQIINR LFHRHG--GP ENSP00000403902/1-828 VARVLAEIPR PLKRRGSMEQ APAVALPPTH KKQYQQIISR LFHRHGGPGP ENSBTAP00000027570/1-830 VARVLAEIPR PLKRRGSMEQ SPAVALPPTH KKQYQQIISR LFHRHG--GP 601 650 ENSTTRP00000007867/1-814 GGPEPELCPI TEGPEARAGP PAPAPPAPIP PPAPLQSSPP EQPQSMEMRS bmy_15595T0/1-846 GGPEPELCPI TEGPEARAGP PAPAPPAPIP PPALLQSSPP EQPQSMEMRS ENSP00000403902/1-828 GGPEPELSPI TEGSEARAGP PAPAPPAPIP PPAPSQSSPP EQPQSMEMRS ENSBTAP00000027570/1-830 GGPEPELSPI TEGSEARAGP PAPAPPAPIP PSTPLQSSPP EQPQSMEMRS 651 700 ENSTTRP00000007867/1-814 VLRKAGSPRK VRRARLSPLV LLLDAALTGE LDVVQQAVKE MNDPSQP-EE bmy_15595T0/1-846 VLRKAGSPRK VRRARLSPFV LLLDAALTGE LDVVQQAVKE MNDPSQPNEE ENSP00000403902/1-828 VLRKAGSPRK ARRARLNPLV LLLDAALTGE LEVVQQAVKE MNDPSQPNEE ENSBTAP00000027570/1-830 VLRKAGSPRK VRRARLNPLV LLLDAALTGE LEVVQQAMKE MNDPSQPNEE 701 750 ENSTTRP00000007867/1-814 GITALHNAIC GANYPIVDFL IAAGANVNSP DSHGWTPLHC AA-CNDTVIC bmy_15595T0/1-846 GITALHNAIC GANYPIVDFL IAAGANVNSP DSHGWTPLHC AASCNDTAIC ENSP00000403902/1-828 GITALHNAIC GANYSIVDFL ITAGANVNSP DSHGWTPLHC AASCNDTVIC ENSBTAP00000027570/1-830 GITALHNAIC GANYPIVDFL IAAGANVNSP DSHGWTPLHC AASCNDTAIC 751 800 ENSTTRP00000007867/1-814 IAL-QHGAAI FA-TLSDGAT AIEKCDPYRE GYVDCATYLA DVEQSMGLMY bmy_15595T0/1-846 MALVQHGAAI FATTLSDGAT AIEKCDPYRE GYADCATYLA DVEQSMGLMY ENSP00000403902/1-828 MALVQHGAAI FATTLSDGAT AFEKCDPYRE GYADCATYLA DVEQSMGLMN ENSBTAP00000027570/1-830 TALVQHGAAI FATTLSDGAT AIEKCDPYRE GYADCATYLA DVEQSMGLMY 801 850 ENSTTRP00000007867/1-814 NGVVYALWNY SAEFGDELSF REGESVTVLR RDGPEETDWW WAALHGQEGY bmy_15595T0/1-846 NGVVYALWDY SAEFGDELPF RDGESVTVLR RDGPEETDWW WAALHGQEGY ENSP00000403902/1-828 SGAVYALWDY SAEFGDELSF REGESVTVLR RDGPEETDWW WAALHGQEGY ENSBTAP00000027570/1-830 NGVVYALWDY SAEFGDELSF REGDSVTVLR RDGLEETDWW WATLHGQEGY 851 900 ENSTTRP00000007867/1-814 VPRNYFGLFP RVKPQRNKV bmy_15595T0/1-846 VPRNYFGLFP RVKPQRNKV ENSP00000403902/1-828 VPRNYFGLFP RVKPQRSKV ENSBTAP00000027570/1-830 VPRNYFGLFP RVKPQRSKV