KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:27 2014 Check: 00 .. Name: bmy_14166T0/1-546 Len: 1133 Check: 2427 Weight: 1.00 Name: ENSTTRP00000000216/1-1106 Len: 1133 Check: 9129 Weight: 1.00 Name: ENSP00000349320/1-1091 Len: 1133 Check: 5644 Weight: 1.00 Name: BACU007741/1-814 Len: 1133 Check: 2481 Weight: 1.00 Name: ENSBTAP00000027409/1-933 Len: 1133 Check: 5051 Weight: 1.00 // 1 50 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 MAAGCLLALX XXXXXXXXXX XXXXXXXXXX XXIKSWVDKM QEDLVTLAKT ENSP00000349320/1-1091 MAAGCLLALT LTLFQSLLIG PSSEEPFPSA VTIKSWVDKM QEDLVTLAKT BACU007741/1-814 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027409/1-933 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 ASGVNQLVDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXRL ENSP00000349320/1-1091 ASGVNQLVDI YEKYQDLYTV EPNNARQLVE IAARDIEKLL SNRSKALVRL BACU007741/1-814 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027409/1-933 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 ALEAEKVQAA HQWREDFAXX XXXXXXXXXX XXPEKNDSEP GSQRIKPVFI ENSP00000349320/1-1091 ALEAEKVQAA HQWREDFASN EVVYYNAKDD LDPEKNDSEP GSQRIKPVFI BACU007741/1-814 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027409/1-933 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 DDANFGRQIS YQHAAVHIPT DIYEGSTIVL NELNWTSALD EVFKKNREED ENSP00000349320/1-1091 EDANFGRQIS YQHAAVHIPT DIYEGSTIVL NELNWTSALD EVFKKNREED BACU007741/1-814 ---------- ---------- -----ATIVL NELNWTSALD EVFKKNREED ENSBTAP00000027409/1-933 ---------- ---------- -----ATIVL NELNWTSALD EVFKKNREED 201 250 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 PSLLWQVFGS ATGLARYYPA SPWVDNSRTP NKIDLYDVRR RPWYIQGAAS ENSP00000349320/1-1091 PSLLWQVFGS ATGLARYYPA SPWVDNSRTP NKIDLYDVRR RPWYIQGAAS BACU007741/1-814 PSLLWQVFGS ATGLARYYP- ---------- ------DFKS ---------- ENSBTAP00000027409/1-933 PSLLWQVFGS ATGLARYYPA SPWVDNSRTP NKIDLYDVRR RPWYIQGAAS 251 300 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 PKDMLILVDV SGSVSGLTLK LIRTSVSEML ETLSDDDFVN VASFNSNAQD ENSP00000349320/1-1091 PKDMLILVDV SGSVSGLTLK LIRTSVSEML ETLSDDDFVN VASFNSNAQD BACU007741/1-814 ----LLLCER SGSVSGLTLK LIRTSVSEML ETLSDDDFVN VASFNSNAQD ENSBTAP00000027409/1-933 PKDMLILVDV SGSVSGLTLK LIRTSVSEML ETLSDDDFVN VASFNSNAQD 301 350 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 VSCFQHLVQA NVRNKKVLKD AVNNITAKGI TDYKKGFSFA FEQLLNYNVS ENSP00000349320/1-1091 VSCFQHLVQA NVRNKKVLKD AVNNITAKGI TDYKKGFSFA FEQLLNYNVS BACU007741/1-814 VSCFQHLVQA NVRNKKVLKD AVNNITAKGI TDYKKGFSFA FEQLLNYNVS ENSBTAP00000027409/1-933 VSCFQHLVQA NVRNKKVLKD AVNNITAKGI TDYKKGFSFA FEQLLNYNVS 351 400 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 RANCNKIIML FTDGGEERAQ EIFTKYNKDK KVRVFTFSVG QHNYDRGPIQ ENSP00000349320/1-1091 RANCNKIIML FTDGGEERAQ EIFNKYNKDK KVRVFTFSVG QHNYDRGPIQ BACU007741/1-814 RANCNKIIML FTDGGEERAQ EIFTKYNKDK KVRVFTFSVG QHNYDRGPIQ ENSBTAP00000027409/1-933 RANCNKIIML FTDGGEERAQ EIFTKYNKDK KVRVFTFSVG QHNY-----Y 401 450 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 WMACEN---- ------KGYY YEIPSIGAIR INTQEYLDVL GRPMVLAGDK ENSP00000349320/1-1091 WMACEN---- ------KGYY YEIPSIGAIR INTQEYLDVL GRPMVLAGDK BACU007741/1-814 WMACEN---- ------KGYY YEIPSIGAIR INTQEYLDVL GRPMVLAGDK ENSBTAP00000027409/1-933 IIICKHINLL CIYVYISGYY YEIPSIGAIR INTQEYLDVL GRPMVLAGDK 451 500 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 AKQVQWTNVY LDALELGLVI TGTLPVFNIT GQNENKTNLK XXXXXXXXXX ENSP00000349320/1-1091 AKQVQWTNVY LDALELGLVI TGTLPVFNIT GQFENKTNLK NQLILGVMGV BACU007741/1-814 AKQVQWTNVY LDAL------ ---------- ---------- ---------- ENSBTAP00000027409/1-933 AKQVQWTNVY LDALELGLVI TGTLPVFNIT GQNENKTNLK NQLILGVMGV 501 550 bmy_14166T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000216/1-1106 XXXXXXXXXX XXXXXLCPNG YYFAIDPNGY VLLHPNLQPK PIGVGIPTIN ENSP00000349320/1-1091 DVSLEDIKRL TPRFTLCPNG YYFAIDPNGY VLLHPNLQPK ---------- BACU007741/1-814 ---------- -----LCPNG YYFAIDPNGY VLLHPNLQPK ---------- ENSBTAP00000027409/1-933 DVSLEDIKRL TPRFTLCPNG YYFAIDPNGY VLLHPNLQPK PIGLGIPTIN 551 600 bmy_14166T0/1-546 --------MN PKSQEPVTLD FLDAELENDI KVEIRNKMID GESGEKTFRT ENSTTRP00000000216/1-1106 LRKRRPNVQN PKSQEPVTLD FLDAELENDI KVEIRNKMID GESGEKTFRT ENSP00000349320/1-1091 ---------N PKSQEPVTLD FLDAELENDI KVEIRNKMID GESGEKTFRT BACU007741/1-814 ---------N PKSQEPVTLD FLDAELENDI KVEIRNKMID GESGEKTFRT ENSBTAP00000027409/1-933 LRKRRPNVQN PKSQEPVTLD FLDAELENDI KVEIRNKMID GESGEKTFRT 601 650 bmy_14166T0/1-546 LVKSQDERYI DKGNRTYTWT PVNGTDYSLA LVLPTYSFYY IKAKIEETIT ENSTTRP00000000216/1-1106 LVKSQDERYI DKGNRTYTWT PVNGTDYSLA LVLPTYSFYY IKAKIEETIT ENSP00000349320/1-1091 LVKSQDERYI DKGNRTYTWT PVNGTDYSLA LVLPTYSFYY IKAKLEETIT BACU007741/1-814 LVKSQDERYI DKGNRTYTWT PVNGTDYSLA LVLPTYSFYY IKAKIEETIT ENSBTAP00000027409/1-933 LVKSQDERYI DKGNRTYTWT PVNGTDYSLA LVLPTYSFYY IKAKIEETIT 651 700 bmy_14166T0/1-546 QARCKYCESD FRVCLLSPST RDSETLKPDN FEESGYTFIA PRDYCNDLKI ENSTTRP00000000216/1-1106 QARCKYCE-- ---------R SDSETLKPDN FEESGYTFIA PRDYCNDLKI ENSP00000349320/1-1091 QARSKKGK-- ---------M KDSETLKPDN FEESGYTFIA PRDYCNDLKI BACU007741/1-814 QARY------ ---------- --SETLKPDN FEESGYTFIA PRDYCNDLKI ENSBTAP00000027409/1-933 QARY------ ---------- --SETLKPDN FEESGYTFIA PRDYCNDLKI 701 750 bmy_14166T0/1-546 SDNNTEFLLN FNELIDRKTP NNPSCNTDLI NRVLLDAGFT NELVQNYWSK ENSTTRP00000000216/1-1106 SDNNTEFLLN FNELIDRKTP NNPSCNTDLI NRVLLDAGFT NELVQNYWSK ENSP00000349320/1-1091 SDNNTEFLLN FNEFIDRKTP NNPSCNADLI NRVLLDAGFT NELVQNYWSK BACU007741/1-814 SDNNTEFLLN FNELIDRKTP NNPSCNTDLI NRVLLDAGFT NELVQNYWSK ENSBTAP00000027409/1-933 SDNNTEFLLN FNEFIDRKTP NNPSCNTDLI NRVLLDAGFT NELVQNYWSK 751 800 bmy_14166T0/1-546 QKNIKGVKAR FVVTDGGITR VYPKEAGENW QENPETYEDS FYKRSLDNDN ENSTTRP00000000216/1-1106 QKNIKGVKAR FVVTDGGITR VYPKEAGENW QENPETYEDS FYKRSLDNDN ENSP00000349320/1-1091 QKNIKGVKAR FVVTDGGITR VYPKEAGENW QENPETYEDS FYKRSLDNDN BACU007741/1-814 QKNIKGVKAR FVVTDGGITR VYPKEAGENW QENPETYEDS FYKRSLDNDN ENSBTAP00000027409/1-933 QKNIKGVKAR FVVTDGGITR VYPKEAGENW QENPETYEDS FYKRSLDNDN 801 850 bmy_14166T0/1-546 YVFTAPYFNK SGPGAYESGI MVSKAVEIYI QGKLLKPAVV GIKIDVNSWI ENSTTRP00000000216/1-1106 YVFTAPYFNK SGPGAYESGI MVSKAVEIYI QGKLLKPAVV GIKIDVNSWI ENSP00000349320/1-1091 YVFTAPYFNK SGPGAYESGI MVSKAVEIYI QGKLLKPAVV GIKIDVNSWI BACU007741/1-814 YVFTAPYFNK SGPGAYESGI MVSKAVEIYI QGKLLKPAVV GIKIDVNSWI ENSBTAP00000027409/1-933 YVFTAPYFNK SGPGAYESGI MVSKAVEIYI QGKLLKPAVV GIKIDLNSWI 851 900 bmy_14166T0/1-546 ENFTKTSIRD PCAGPVCDCK RNSDVMDCVI LDDGGFLLMA NHDDYTNQIG ENSTTRP00000000216/1-1106 ENFTKTSIRD PCAGPVCDCK RNSDVMDCVI LDDGGFLLMA NHDDYTNQIG ENSP00000349320/1-1091 ENFTKTSIRD PCAGPVCDCK RNSDVMDCVI LDDGGFLLMA NHDDYTNQIG BACU007741/1-814 ENFTKTSIRD P--------- ----VMDCVI LDDGGFLLMA NHDDYTNQIG ENSBTAP00000027409/1-933 ENFTKTSIRD PCAGPVCDCK RNSDVMDCVI LDDGGFLLMA NHDDYTNQIG 901 950 bmy_14166T0/1-546 RFFGEIDPSL MRHLVNISVY AYNKSYDYQS VCEPGAAPKQ GAGHRSASVV ENSTTRP00000000216/1-1106 RFFGEIDPSL MRHLVNISVY AYNKSYDYQS VCEPGAAPKQ GAWHRSAYVP ENSP00000349320/1-1091 RFFGEIDPSL MRHLVNISVY AFNKSYDYQS VCEPGAAPKQ GAGHRSAYVP BACU007741/1-814 RFFGEIDPSL MRHLVNISVY AYNKSYDYQS VCEPGAAPKQ GAGHRSASVP ENSBTAP00000027409/1-933 RFFGEIDPSL MRHLVNISVY AYNKSYDYQS VCEPGAAPKQ GAGHRSAYVP 951 1000 bmy_14166T0/1-546 SNVQVTLPLF QRDTQCRLMS ILQQFLLSLT FPRLLEAVEM EDDDFTASLS ENSTTRP00000000216/1-1106 SIAXXXXXXX XXXXXX--XS ILQQFLLSLT FPRLLEAVEM EDDDFTASLS ENSP00000349320/1-1091 SVADILQIGW WATAAA--WS ILQQFLLSLT FPRLLEAVEM EDDDFTASLS BACU007741/1-814 SIADILHIGW WATAAA--WS ILQQFLLSLT FPRLLEAVEM EDDDFTASLS ENSBTAP00000027409/1-933 SIADVLHIGW WATAAA--WS ILQQFLLSLT FPRLLEAVEM EDDDFTASLS 1001 1050 bmy_14166T0/1-546 KQSCITEQTQ YFFDNDSKSF SGVLDCGNCS RIFHVEKLMN TNLIFIMVES ENSTTRP00000000216/1-1106 KQSCITEQTQ YFFDNDSKSF SGVLDCGNCS RIFHVEKLMN TNLIFIMVES ENSP00000349320/1-1091 KQSCITEQTQ YFFDNDSKSF SGVLDCGNCS RIFHGEKLMN TNLIFIMVES BACU007741/1-814 KQSCITEQTQ YFFDNDSKSF SGVLDCGNCS RIFHVEKLMN TNLIFIMVES ENSBTAP00000027409/1-933 KQSCITEQTQ YFFDNDSKSF SGVLDCGNCS RIFHVEKLMN TNLIFIMVES 1051 1100 bmy_14166T0/1-546 KGTCPCDTRL LIQAEQTSDG PDPCDMVKQP RYRKGPDVCF DNNA------ ENSTTRP00000000216/1-1106 KGTCPCDTRL LIQAEQTSDG PDPCDMVKQP RYRKGPDVCF DNNALEEYTD ENSP00000349320/1-1091 KGTCPCDTRL LIQAEQTSDG PNPCDMVKQP RYRKGPDVCF DNNVLEDYTD BACU007741/1-814 KGTCPCDTRL LIQAEQTSDG PDPCDMVKQP RYRKGPDVCF DNNALEDYTD ENSBTAP00000027409/1-933 KGTCPCDTRL LIQAEQTSDG PDPCDMVKQP RYRKGPDVCF DNNALEDYTD 1101 1150 bmy_14166T0/1-546 ---------- ---------- ---LVSKTKH LLY ENSTTRP00000000216/1-1106 CGGCSG-SPS --CHIGIQCV LLWL-SGSRH YQL ENSP00000349320/1-1091 CGGVSGLNPS LWYIIGIQFL LLWLVSGSTH RLL BACU007741/1-814 CGGVSGLSPS LWSIIGIQCV LLWLLSGSRH YQL ENSBTAP00000027409/1-933 CGGVSGLNPS LWSIIGIQCV LLWLLSGSRH HQL