KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:24 2014 Check: 00 .. Name: ENSTTRP00000008248/1-672 Len: 690 Check: 9751 Weight: 1.00 Name: ENSP00000336994/1-669 Len: 690 Check: 6817 Weight: 1.00 Name: bmy_15582T0/1-495 Len: 690 Check: 3672 Weight: 1.00 Name: BACU018296/1-602 Len: 690 Check: 4576 Weight: 1.00 Name: ENSBTAP00000027395/1-574 Len: 690 Check: 1830 Weight: 1.00 // 1 50 ENSTTRP00000008248/1-672 MAAAQEADGA GSAVVAAGGG SSGQVTSNGS IGRDPPAETQ PQNPPPQPAP ENSP00000336994/1-669 MAAAQEADGA RSAVVAAGGG SSGQVTSNGS IGRDPPAETQ PQNPPAQPAP bmy_15582T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU018296/1-602 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027395/1-574 MAAAQEADGA GSAVVAAGGG SSGQVTSNGS VGRDPPAETQ PQNPPPQPAP 51 100 ENSTTRP00000008248/1-672 NAWQVIKGVL FRIFIIWAIS SWFRRGPAPQ DQAGPGGAPR VASRNLFPKD ENSP00000336994/1-669 NAWQVIKGVL FRIFIIWAIS SWFRRGPAPQ DQAGPGGAPR VASRNLFPKD bmy_15582T0/1-495 ---------- MRGFTV---- ------PCPR RTA------- ---------- BACU018296/1-602 ---------L LRIFIIWAIS SWFRRGPAPQ DQAGPGGAPR VASRNLFPKD ENSBTAP00000027395/1-574 NAWQVIKGVL FRIFIIWAIS SWFRRGPAPQ DQAGPGGAPR VASRNLFPKD 101 150 ENSTTRP00000008248/1-672 TLMNLHVYIS EHEHFTDFNA TSALFWEQHD LVYGDWTSGE NSDGCYEHFA ENSP00000336994/1-669 TLMNLHVYIS EHEHFTDFNA TSALFWEQHD LVYGDWTSGE NSDGCYEHFA bmy_15582T0/1-495 ---------- ---------- ---------- ---------- ---------- BACU018296/1-602 TLMNLHVYIS EHEHFTDFNA TSALFWEQHD LVYGDWTSGE NSDGCYEHFA ENSBTAP00000027395/1-574 TLMNLHVYIS EHEHFTDFNA TSALFWEQQD LVYGDWTSGE NSDGCYEHFA 151 200 ENSTTRP00000008248/1-672 ELDIPQSVQQ NGSIYIHVYF TKSGFHPDPR QKALYRRLAT VHMSRMINKY ENSP00000336994/1-669 ELDIPQSVQQ NGSIYIHVYF TKSGFHPDPR QKALYRRLAT VHMSRMINKY bmy_15582T0/1-495 ----LQSVQQ NGSIYIHVYF TKSGFHPDPR QKALYRRLAT VHMSRMINKY BACU018296/1-602 ELDIPQSVQQ NGSIYIHVYF TKSGFHPDPR QKALYRRLAT VHTSRMINKY ENSBTAP00000027395/1-574 ELDIPQSVQQ NGSIYIHVYF TKSGFHPDPR QKALYRRLAT VHMSRMINKY 201 250 ENSTTRP00000008248/1-672 KRRRFQKTKN LLTGETEADP EMIKRAEDYG PVEVISHWHP NITINIVDDH ENSP00000336994/1-669 KRRRFQKTKN LLTGETEADP EMIKRAEDYG PVEVISHWHP NITINIVDDH bmy_15582T0/1-495 KRRRFQKTKN LLTGETEADP EMIKRAEDYG PVEVISHWHP NITINIVDDH BACU018296/1-602 KRRRFQKTKN LLTGETEADP EMIKRAEDYG PVEVISHWHP NITINIVDDH ENSBTAP00000027395/1-574 KRRRFQKTKN LLTGETEADP EMIKRAEDYG PVEVISHWHP NITINIVDDH 251 300 ENSTTRP00000008248/1-672 TPWV-GSVPP PLDQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000336994/1-669 TPWVKGSVPP PLDQYVKFDA VSGDYYPIIY FNDYWNLQKD YYPINESLAS bmy_15582T0/1-495 TPWVKGSVPP PLDQYVKFDA VSGDYYPIIY FNDYWNLQKD YYPINESLAS BACU018296/1-602 TPWVKGSVPP PLDQYVKFDA VSGDYYPIIY FNDYWNLQKD YYPINESLAS ENSBTAP00000027395/1-574 TPWVKGSVPP PLDQYVKFDA VSGDYYPIIY FNDYWNLQKD YYPINESLAS 301 350 ENSTTRP00000008248/1-672 XXXXXXXXXX XXXXXXXYAA QSTKSPWNFL GDELYEQSDE EQDSVKVALL ENSP00000336994/1-669 LPLRVSFCPL SLWRWQLYAA QSTKSPWNFL GDELYEQSDE EQDSVKVALL bmy_15582T0/1-495 LPLRVSFCPL SLWRWQLYAA QSTKSPWNFL GDELYEQSDE EQDSVKVALL BACU018296/1-602 LPLRVSFCPL SLWRWQLYAA QSTKSPWNFL GDELYEQSDE EQDSVKVALL ENSBTAP00000027395/1-574 LPLRVSFCPL SLWRWQLYAA QSAKSPWNFL GDELYEQSDE EQDSVKVALL 351 400 ENSTTRP00000008248/1-672 ETNPYLLALT IIVSIVHSVF EFLAFKNDIQ FWNSRQSLEG LSVRSVFFGV ENSP00000336994/1-669 ETNPYLLALT IIVSIVHSVF EFLAFKNDIQ FWNSRQSLEG LSVRSVFFGV bmy_15582T0/1-495 ETNPYLLALT IIVSIVHSVF EFLAFKNDIQ FWNSRQSLEG LSVRSVFFGV BACU018296/1-602 ETNPYLLALT IIVSIVHSVF EFLAFKNDIQ FWNSRQSLEG LSVRSVFFGV ENSBTAP00000027395/1-574 ETNPYLLALT IIVSIVHSVF EFLAFKNDIQ FWNSRQSLEG LSVRSVFFGV 401 450 ENSTTRP00000008248/1-672 FQSFVVLLYI LDNETNFVVQ VSVFIGVLID LWKITKVMDV RLDREHKVAG ENSP00000336994/1-669 FQSFVVLLYI LDNETNFVVQ VSVFIGVLID LWKITKVMDV RLDREHRVAG bmy_15582T0/1-495 FQSFVVLLYI LDNETNFVVQ VSVFIGVLID LWKITKVMDV RLDRERKVAG BACU018296/1-602 FQSFVVLLYI LDNETNFVVQ VSVFIGVLID LWKITKVMDV RLDRERKVAG ENSBTAP00000027395/1-574 FQSFVVLLYI LDNETNFVVQ VSVFIGVLID LWKITKVMDV RLDREHKVAG 451 500 ENSTTRP00000008248/1-672 LFPRPTFKDK STYVESSTKV YDDMAFRYLS WILFPLLGCY AVYSLLYLEH ENSP00000336994/1-669 IFPRLSFKDK STYIESSTKV YDDMAFRYLS WILFPLLGCY AVYSLLYLEH bmy_15582T0/1-495 LFARPTFKDK STYVESSTKV YDDMAFRYLS WILFPLLGCY AVYSLLYLEH BACU018296/1-602 LFPRPTFKDK STYVESSTKV YDDMAFRYLS WILFPLLGCY AVYSLLYLEH ENSBTAP00000027395/1-574 LLPRPTFQDK STYVESSTKV YDDMAFRYLS WILFPLLGCY AVYSLLYLEH 501 550 ENSTTRP00000008248/1-672 KGWYSWVLSM LYGFLLTFGF ITMTPQLFIN YKLKSVAHLP WRMLTYKALN ENSP00000336994/1-669 KGWYSWVLSM LYGFLLTFGF ITMTPQLFIN YKLKSVAHLP WRMLTYKALN bmy_15582T0/1-495 KGWYSW---- ---------- ---------- --LKSVAHLP WRMLTYKALN BACU018296/1-602 KGWYSWVLSM LYGFLLX--F ITMTPQLFIN YKLKSVAHLP WRMLTYKALN ENSBTAP00000027395/1-574 MGWSGMAHGQ LRAPSHPTGF ITMTPQLFIN YKLKSVAHLP WRMLTYKALN 551 600 ENSTTRP00000008248/1-672 TFIDDLFAFV IKMPVMYRIG CLRDDVVFFI YLYQRWIYRV DPTRVNEFGM ENSP00000336994/1-669 TFIDDLFAFV IKMPVMYRIG CLRDDVVFFI YLYQRWIYRV DPTRVNEFGM bmy_15582T0/1-495 TFIDDLFAFV IKMPVMYRIG CLRDDVVFFI YLYQRWIYRV DPTRVNEFGM BACU018296/1-602 TFIDDLFAFV IKMPVMYRIG CLRDGEAWWA ---GGWAGRQ APTR------ ENSBTAP00000027395/1-574 TFIDDLFAFV IKMPVMYRIG CLRD------ ---------- ---------- 601 650 ENSTTRP00000008248/1-672 SG-------- --EAPTAAGA LPPAPAPATT T--AAAREEA STPPPTRPTQ ENSP00000336994/1-669 SGEDPTAAAP VAEVPTAAGA LTPTPAP-TT T--TATREEA STSLPTKPTQ bmy_15582T0/1-495 SG-------- --EAPTAAGA LAPAPAPATT TAAAAAREEA STPPPARPTQ BACU018296/1-602 ---------- ------AGHG QGPAPAPATT T--AAAREEA STPPPARPTQ ENSBTAP00000027395/1-574 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000008248/1-672 GASSDSEPQ- --FVEAPS-- LSLCVSSHLA PPAQHHQESW ENSP00000336994/1-669 GASSASEPQ- ----EAP--- ---------P KPAEDKKKD- bmy_15582T0/1-495 GASSDSELQ- ----EAP--- ---------P KPAEDKKRD- BACU018296/1-602 EASSDSEPQG ASFVEAPSVC LSLHVSSHLA PPAQHHRESW ENSBTAP00000027395/1-574 ---------- ---------- ---------- ----------