KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:31:23 2014 Check: 00 .. Name: ENSTTRP00000005394/1-271 Len: 330 Check: 9252 Weight: 1.00 Name: ENSP00000359225/1-329 Len: 330 Check: 3214 Weight: 1.00 Name: ENSBTAP00000027115/1-329 Len: 330 Check: 2068 Weight: 1.00 Name: bmy_14267T0/1-330 Len: 330 Check: 6355 Weight: 1.00 Name: BACU019052/1-271 Len: 330 Check: 9937 Weight: 1.00 // 1 50 ENSTTRP00000005394/1-271 ---------- ---------I ASKYDHQAEE DLRNWIEEVT GMSIGTNFQL ENSP00000359225/1-329 MTHFNKGPSY GLSAEVKNKI ASKYDHQAEE DLRNWIEEVT GMSIGPNFQL ENSBTAP00000027115/1-329 MTHFNKGPSY GLSAEVKNKI ASKYDHQAEE DLRNWIEEVT GMSIGANFQL bmy_14267T0/1-330 MTHFNKGPSY GLSAEVKNKI ASKYDHQAEE DLRNWIEEVT GMSIGTNFQL BACU019052/1-271 ---------- ---------I ASKYDHQAEE DLRNWIEEVT GMSIGTNFQL 51 100 ENSTTRP00000005394/1-271 GLKDGIILCE LINKLQPGSV KKVNESSLNW PQLENIGNFI KAIQAYGMKP ENSP00000359225/1-329 GLKDGIILCE LINKLQPGSV KKVNESSLNW PQLENIGNFI KAIQAYGMKP ENSBTAP00000027115/1-329 GLKDGIILCE LINKLQPGSV KKVNESSLNW PQLENIGNFI KAIQAYGMKP bmy_14267T0/1-330 GLKDGIILCE LINKLQPGSV KKVNESSLNW PQLENIGNFI KAIQAYGMKP BACU019052/1-271 GLKDGIILCE LINKLQPGSV KKVNESSLNW PQLENIGNFI KAIQAYGMKP 101 150 ENSTTRP00000005394/1-271 HDIFEANDLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359225/1-329 HDIFEANDLF ENGNMTQVQT TLVALAGLAK TKGFHTTIDI GVKYAEKQTR ENSBTAP00000027115/1-329 HDIFEANDLF ENGNMTQVQT TLVALAGLAK TKGFHTTIDI GVKYAEKQTR bmy_14267T0/1-330 HDIFEANDLF ENGNMTQVQT TLVALAGLAK TKGFHTTIDI GVKYAEKQTR BACU019052/1-271 HDIFEANDLF ENGNMTQVQT TLVALAGLAK TKGFHTTIDI GVKYAEKQTR 151 200 ENSTTRP00000005394/1-271 XXXXXXXXXX XXXXXXXMGT NKCASQAGMT AYGTRRHLYD PKMQTDKPFD ENSP00000359225/1-329 RFDEGKLKAG QSVIGLQMGT NKCASQAGMT AYGTRRHLYD PKMQTDKPFD ENSBTAP00000027115/1-329 RFDEGKLKAG QSVIGLQMGT NKCASQAGMT AYGTRRHLYD PKMQTDKPFD bmy_14267T0/1-330 RFDEGKLKAG QSVIGLQMGT NKCASQAGMT AYGTRRHLYD PKMQTDKPFD BACU019052/1-271 RFDEGKLKAG QSVIGLQMGT NKCASQAGMT AYGTRRHLYD PKMQTDKPFD 201 250 ENSTTRP00000005394/1-271 QTTISLQMGT NKG------- ---------- ---------- ---------- ENSP00000359225/1-329 QTTISLQMGT NKGASQAGML APGTRRDIYD QKLTLQPVDN STISLQMGTN ENSBTAP00000027115/1-329 QTTISLQMGT NKGASQAGML APGTRRDIYD QKLTLQPVDN STISLQMGTN bmy_14267T0/1-330 QTTISLQMGT NKGASQAGML APGTRRDIYD QKLTLQPVDN STISLQMGTN BACU019052/1-271 QTTISLQMGT NKG------- ---------- ---------- ---------- 251 300 ENSTTRP00000005394/1-271 --ASQKEMSV YGLGRQVYDP KYCAAPTEPV IHNGSQGTGT NGSEISDSDY ENSP00000359225/1-329 KVASQKGMSV YGLGRQVYDP KYCAAPTEPV IHNGSQGTGT NGSEISDSDY ENSBTAP00000027115/1-329 KVASQKGMSV YGLGRQVYDP KYCAAPTEPV IHNGSQGTGT NGSEISDSDY bmy_14267T0/1-330 KVASQKGMSV YGLGRQVYDP KYCAAPTEPV IHNGSQGTGT NGSEISDSDY BACU019052/1-271 --ASQKGMSV YGLGRQVYDP KYCAAPTEPV IHNGSQGTGT NGSEISDSDY 301 350 ENSTTRP00000005394/1-271 QAEYPDEY-H GEYQDDYPRD YQFGDQGIDY ENSP00000359225/1-329 QAEYPDEY-H GEYQDDYPRD YQYSDQGIDY ENSBTAP00000027115/1-329 QAEYPDEY-H GEYQDDYPRD YQYGDQGIDY bmy_14267T0/1-330 QAEYPDEYHH GEYQDDYPTD YQYGDQGIDY BACU019052/1-271 QAEYPDEY-H GEYQDDYPRD YQYGDQGIDY