KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:30:56 2014 Check: 00 .. Name: BACU007459/1-238 Len: 269 Check: 9360 Weight: 1.00 Name: bmy_03375T0/1-221 Len: 269 Check: 7653 Weight: 1.00 Name: ENSTTRP00000015322/1-238 Len: 269 Check: 5682 Weight: 1.00 Name: ENSBTAP00000026958/1-238 Len: 269 Check: 6319 Weight: 1.00 // 1 50 BACU007459/1-238 MGLRSLSAWP AASGLGWLAA VWAGVRAAVW FPGVCEAAAG CRLRGQVLIL bmy_03375T0/1-221 --------MA AAPLLLLLLL V-----PVPL LPLLAQGPGG A--------- ENSTTRP00000015322/1-238 --------MA AAPLLLLLLL V-----PVPL LPLLAQGPGG A--------- ENSBTAP00000026958/1-238 --------MA AAPLLLLLLL V-----PVPL LPLLAQGPGG A--------- 51 100 BACU007459/1-238 LSPCCPCVLL PAEPPLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG bmy_03375T0/1-221 LGNRHAVYWN SSNQHLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG ENSTTRP00000015322/1-238 LGNRHAVYWN SSNQHLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG ENSBTAP00000026958/1-238 LGNRHAVYWN SSNQHLRREG YTVQVNVNDY LDIYCPHYNS SGVGPGAGPG 101 150 BACU007459/1-238 PGGGAEQYVL YMVSRAGYRT CNATQGFKRW ECNRPHAPHS PIKFSEKFQR bmy_03375T0/1-221 PGGGAEQYVL YMVSRAGYRT CNATQGFKRW ECNRPHAPHS PIKFSEKFQR ENSTTRP00000015322/1-238 PGGGAEQYVL YMVSRAGYRT CNASQGFKRW ECNRPHAPHS PIKFSEKFQR ENSBTAP00000026958/1-238 PGGGAEQYVL YMVSRDGYRT CNASQGSKRW ECNRPHAPHS PIKFSEKFQR 151 200 BACU007459/1-238 YSAFSLGYEF HAGHEYYYIS ---------- ---------- --SHSGEKPV bmy_03375T0/1-221 YSAFSLGYEF HAGHEYYYIS ---------- ---------- --SHSGEKPV ENSTTRP00000015322/1-238 YSAFSLGYEF HAGHEYYYIS TPTHNLHWKC LRMKVFVCCA STSHSGEKPV ENSBTAP00000026958/1-238 YSAFSLGYEF HAGHEYYYIS TPTHNLHWKC LRMKVFVCCA STSHSGEKPV 201 250 BACU007459/1-238 PTLPQFTMGP NVKINVLEDF EGENPQVPKL EKSISGTS-P KQEHLP-LAV bmy_03375T0/1-221 PTLPQFTMGP NVKINVL--- -GESAQRPLV ATAGTAAPSP VAAHLACLSR ENSTTRP00000015322/1-238 PTLPQFTMGP NVKINVLEDF EGENPQVPKL EKSISGTS-P KREHLP-LAV ENSBTAP00000026958/1-238 PTLPQFTMGP HVKINVLEDF EGENPQVPKL EKSISGTS-P KREHLP-LAV 251 300 BACU007459/1-238 GIAFFLMTLL AS------- bmy_03375T0/1-221 GHRSLPPPTY ATHRHFWRP ENSTTRP00000015322/1-238 GIAFFLMTLL AS------- ENSBTAP00000026958/1-238 GIAFFLMTLL AS-------