KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:45 2014 Check: 00 .. Name: ENSTTRP00000001122/1-728 Len: 840 Check: 6817 Weight: 1.00 Name: ENSP00000254695/1-730 Len: 840 Check: 1006 Weight: 1.00 Name: ENSBTAP00000026639/1-712 Len: 840 Check: 2302 Weight: 1.00 Name: bmy_00194T0/1-838 Len: 840 Check: 7414 Weight: 1.00 Name: BACU006959/1-401 Len: 840 Check: 899 Weight: 1.00 // 1 50 ENSTTRP00000001122/1-728 MFVRKRSISF GGFGW---ID KTMLASLKVK KQEL-----A NSSDVTLPDR ENSP00000254695/1-730 MFGRKRSVSF GGFGW---ID KTMLASLKVK KQEL-----A NSSDATLPDR ENSBTAP00000026639/1-712 ---------- ---------- --KLSSLLIQ MNFI-----P GEAGVELPDN bmy_00194T0/1-838 --MKSRKAKS GKANYPEALQ RQDQIIFSLD PNEFCPWGSP GSSFQTVNGE BACU006959/1-401 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001122/1-728 PLSPPL---- -----TAPPT MKSAEFFEML EKMQGIKLEE QKPGPQKNKD ENSP00000254695/1-730 PLSPPL---- -----TAPPT MKSSEFFEML EKMQGIKLEE QKPGPQKNKD ENSBTAP00000026639/1-712 ALSLSL---- -----CPVCV FQSAEFFEML EKMQGIKLEE QKPGPQKNKD bmy_00194T0/1-838 AFSADLLADA PSFSPRPLCV FQSAEFFEML EKMQGIKLEE QKPGPQKNKD BACU006959/1-401 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001122/1-728 DYIPYPSIDE VVEKGGPYPM IVLPQFGGYW IEDPENVSTP TSLGSSICEE ENSP00000254695/1-730 DYIPYPSIDE VVEKGGPYPQ VILPQFGGYW IEDPENVGTP TSLGSSICEE ENSBTAP00000026639/1-712 DYIPYPSIDE VVEKGGPYPL IVLPQFGGYW IEDPENVSTP TSLGSSICED bmy_00194T0/1-838 DYIPYPSIDE VVEKGGPYPL IVLPQFGGYW IEDPENVSTP TSLGSSICEE BACU006959/1-401 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000001122/1-728 EEEDNLSPST FGYKLECKGE ARAYRRHFLG KDHLNFYCTG SSLGNLLLSI ENSP00000254695/1-730 EEEDNLSPNT FGYKLECKGE ARAYRRHFLG KDHLNFYCTG SSLGNLILSV ENSBTAP00000026639/1-712 EEEDSLSPST FGYKLECKGE ARAYRRHFLG KDHLNFYCTG SSLGNLLLSV bmy_00194T0/1-838 EEEDNLSPST FGYKLECKGE ARAYRRHFLG KDHLNFYCTG SSLGNLLLSI BACU006959/1-401 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000001122/1-728 KCEETDGIEY LRIILRSKVK TVHERIPLAG LSKLPSVPQI AKAFCDDAVG ENSP00000254695/1-730 KCEEAEGIEY LRVILRSKLK TVHERIPLAG LSKLPSVPQI AKAFCDDAVG ENSBTAP00000026639/1-712 KCEEAEGVEY LRIILRSKVK TVHERIPLAG LSKLPSVPQI AKAFCDDAVG bmy_00194T0/1-838 KCEEADGIEY LRIILRSKVK TVHERIPLAG LSKLPSVPQI AKAFCDDAVG BACU006959/1-401 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000001122/1-728 LKFNPVLYPK ASQMIVSYDE HDVNNTFKFG VIYQKARQTL EEELFGNSEE ENSP00000254695/1-730 LRFNPVLYPK ASQMIVSYDE HEVNNTFKFG VIYQKARQTL EEELFGNNEE ENSBTAP00000026639/1-712 LKFNPVLYPK ASQMIVSYDE HDVNNTFKFG VIYQKARQTL EEELFGNNEE bmy_00194T0/1-838 LKFNPVLYPK ASQMIVSYDE HDVNNTFKFG VIYQKARQTL EEELFGNSEE BACU006959/1-401 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000001122/1-728 SPAFKEFLDL LGDTITLQDF KGFRGGLDVT HGQTGVESVY TIFRDREIMF ENSP00000254695/1-730 SPAFKEFLDL LGDTITLQDF KGFRGGLDVT HGQTGVESVY TTFRDREIMF ENSBTAP00000026639/1-712 SPAFKEFLEL LGDTITLQDF KGFRGGLDVT HGQTGVESVY TIFRDREIMF bmy_00194T0/1-838 SPAFKEFLDL LGDTITLQDF KGFRGGLDVT HGQTGVESVY TIFRDREIMF BACU006959/1-401 ---------- ---------- ---------- ---------- --------MF 351 400 ENSTTRP00000001122/1-728 HVSTKLPFTE GDTQQLQRKR HIGNDIVAII FQEENTPFVP DMIASNFLHA ENSP00000254695/1-730 HVSTKLPFTD GDAQQLQRKR HIGNDIVAII FQEENTPFVP DMIASNFLHA ENSBTAP00000026639/1-712 HVSTKLPFTE GDTQQLQRKR HIGNDIVAII FQEENTPFVP DMIASNFLHA bmy_00194T0/1-838 HVSTKLPFTE GDTQQLQRKR HIGNDIVAII FQEENTPFVP DMIASNFLHA BACU006959/1-401 HVSTKLPFTE GDTQQLQRKR HIGNDIVAII FQEENTPFVP DMIASNFLHA 401 450 ENSTTRP00000001122/1-728 YIVVQAENEG TETPSYKVAV TAREDVPAFG PPLPSPPVFQ KGPEFREFLL ENSP00000254695/1-730 YIVVQVETPG TETPSYKVSV TAREDVPTFG PPLPSPPVFQ KGPEFREFLL ENSBTAP00000026639/1-712 YIVVQAENPG TEPPSYKVSV TAREDVPAFG PPLPSPPVFQ KGPEFREFLL bmy_00194T0/1-838 YIVVQAENPG TETPSYKVAV TAREDVPAFG PPLPSPPVFQ KGPEFREFLL BACU006959/1-401 YIVVQAENPG TETPSYKVAV TAREDVPAFG PPLPSPPAFQ KGPEFREFLL 451 500 ENSTTRP00000001122/1-728 TKLTNAENAC CKSDKFAKLE DRTRAALLDN LHDELHAHTQ AMLGLGPEED ENSP00000254695/1-730 TKLTNAENAC CKSDKFAKLE DRTRAALLDN LHDELHAHTQ AMLGLGPEED ENSBTAP00000026639/1-712 TKLTNAENAC CKSDKFAKLE DRTRAALLDN LHDELHAHTQ AMLGLGPEED bmy_00194T0/1-838 TKLTNAENAC CKSDKFAKLE DRTRAALLDN LHDELHAHTQ AMLGLGPEED BACU006959/1-401 TKLTNAENAC CKSDKFAKLE DRTRAALLDN LHDELHAHTQ AMLGLGPEED 501 550 ENSTTRP00000001122/1-728 KFENGGHGGF LESFKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254695/1-730 KFENGGHGGF LESFKRAIRV RSHSMETMVG GQKKSHSGGI PGSLSGGISH ENSBTAP00000026639/1-712 KFENGGHGGF LESFKRAIRV RSHSMETMVS SQKKQHGGGI PGSLSGGITH bmy_00194T0/1-838 KFENGGHGGF LESFKRAIRV RSHSMETMVS SQKKQHGGGI PGSLSGGISH BACU006959/1-401 KFENGGHGGF LESFKRAIRV RSHSMETMVS SQKKQHGGGI PGSLSGGISH 551 600 ENSTTRP00000001122/1-728 XXXXXXXXXX XPPVAVATAK NQSRSPIKRR SGLFPRLHTG SEGQGDSRTR ENSP00000254695/1-730 NSMEVTKTTF SPPVVAATVK NQSRSPIKRR SGLFPRLHTG SEGQGDSRAR ENSBTAP00000026639/1-712 NSVEVTKTTF SPPVAVATAK NQSRSPIKRR SGLFPRLHTG SEGQGDSRTR bmy_00194T0/1-838 NSTEVTKTTF SPPVAVATAK NQSRSPIKRR SGLFPRLHTG SEGQGDSRTR BACU006959/1-401 NSTEVTKTTF SPPVAAATAK NQSRSPIKRR SGLFPRLHTG SEGQADSRTR 601 650 ENSTTRP00000001122/1-728 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254695/1-730 CDSTSSTPKT PDGGHSSQEI KSETSSNPSS PEICPNKEKP FMKLKENGRA ENSBTAP00000026639/1-712 CDSASSNPKT PEGGHSSQEI KSETSSNPSS PEICPNKEKP FIKLKENGRA bmy_00194T0/1-838 CDSASSNPKT PEGGHSSQEI KSETSSNPSS PEICPSKEKP FIKLKENGRA BACU006959/1-401 CDSASSNPKT PEGGHSSQEI KSETSSNPSS PEICPSKEKP FIKLKENGRA 651 700 ENSTTRP00000001122/1-728 -XXXXXXXXX XXXXXXXXXX VMEECDSG-- ---------- ---------- ENSP00000254695/1-730 -ISRSSSSTS SVSSTAGEGE AMEEGDSG-- ---------- ---------- ENSBTAP00000026639/1-712 NISRSSSSTS SFSSTAGEGE AMEECDSG-- ---------- ---------- bmy_00194T0/1-838 NISRSSSSTS SFSSTAGEGE AMDECDSGVG VAPSNPGEQG GTLGPARYRS BACU006959/1-401 NISRSSSSTS SFSSTAGEGE VMEECDSG-- ---------- ---------- 701 750 ENSTTRP00000001122/1-728 ---------- ------SSQP STTSPFKQEV FVYSPSPSSE SPSLGAAATP ENSP00000254695/1-730 ---------- ------GSQP STTSPFKQEV FVYSPSPSSE SPSLGAAATP ENSBTAP00000026639/1-712 ---------- ------SSQP STTSPFKQEV FVYSPSPSSE SPSLGAAATP bmy_00194T0/1-838 VHQHSYCGQS PVQALQSSQP STTSPFKQEV FVYSPSPSSE SPSLGAAATP BACU006959/1-401 ---------- ------SSQP STTSPFKQEV FVYSPSPSSE SPSLAAAAAP 751 800 ENSTTRP00000001122/1-728 IIMSRSPTDV KSRNSPRSNL KFRFDKLSHA SSSA------ ---------- ENSP00000254695/1-730 IIMSRSPTDA KSRNSPRSNL KFRFDKLSHA SSGAGH---- ---------- ENSBTAP00000026639/1-712 IIMSRSPTDV KSRNSPRSNL KFRFDKLSHA SSSA------ ---------- bmy_00194T0/1-838 IIMSRSPTDV KSRNSPRSNL KFRFDKLSHA SSSAGSELGK GGSGYRSESR BACU006959/1-401 IIMSRSPTDV KSRNSPRSNL KFRFDKLSHA SSSA------ ---------- 801 850 ENSTTRP00000001122/1-728 ---------- ---------- ---------- ---------- ENSP00000254695/1-730 ---------- ---------- ---------- ---------- ENSBTAP00000026639/1-712 -----VR--- ---------- ---------- ---------- bmy_00194T0/1-838 EVERVVRWAA ETDSRMLHPG RGSAVSWTRQ EGGCSHSKCI BACU006959/1-401 -----VR--- ---------- ---------- ---------I