KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:28 2014 Check: 00 .. Name: BACU000958/1-292 Len: 715 Check: 4987 Weight: 1.00 Name: ENSP00000258499/1-712 Len: 715 Check: 4171 Weight: 1.00 Name: ENSBTAP00000026571/1-709 Len: 715 Check: 301 Weight: 1.00 Name: bmy_13861T0/1-710 Len: 715 Check: 9241 Weight: 1.00 Name: ENSTTRP00000004140/1-710 Len: 715 Check: 1715 Weight: 1.00 // 1 50 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 MLAMDTCKHV GQLQLAQDHS SLNPQKWHCV DCNTTESIWA CLSCSHVACG ENSBTAP00000026571/1-709 MLTMDKCQHI GQLRLAQDHP ILNPQKWHCV DCNTTESIWA CLSCSHVACG bmy_13861T0/1-710 MLTMDKCKHI GQLRLAQDHS ILNPQKWHCV DCNTTESIWA CLSCSHVACG ENSTTRP00000004140/1-710 MLTMDKCKHI GQLRLAQDHS ILNPQKWHCV DCNTTESIWA CLSCSHVACG 51 100 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 RYIEEHALKH FQESSHPVAL EVNEMYVFCY LCDDYVLNDN TTGDLKLLRR ENSBTAP00000026571/1-709 RYIEEHALGH FQESSHPVAL EVNEMYVFCY LCDDYVLNDN ATGDLKLLRS bmy_13861T0/1-710 RYIEEHALKH FQESSHPVAL EVNEMYVFCY LCDDYVLNDN AIGDLKLLRS ENSTTRP00000004140/1-710 RYIEEHALRH FQESSHPVAL EVNEMYVFCY LCDDYVLNDN AIGDLKLLRS 101 150 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 TLSAIKSQNY HCTTRSGRFL RSMGTGDDSY FLHDGAQSLL QSEDQLYTAL ENSBTAP00000026571/1-709 TLSAIKNQNY HCTTRSGRVL RSMGTSDDSY FLHDGTQSLL QHEDQMYTAL bmy_13861T0/1-710 TLSAIKSQNY HCTTRSGRVL RSMGTSDDSY FLHDGTQSLL QNEDQMYTAL ENSTTRP00000004140/1-710 TLSAIKSQNY HCTTRSGRVL RSVGTSDDSY FLHDGTQSLL QNEDQMYTAL 151 200 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 WHRRRILMGK IFRTWFEQSP IGRKKQEEPF QEKIVVKREV KKRRQE-LEY ENSBTAP00000026571/1-709 WHRRRILMGK IFRTWFEQSP IGRKRQEQ-F QEKL-AKREE KKRRQELLEH bmy_13861T0/1-710 WHRRRILMGK IFRTWFEQLP TGRKRQEQ-F QEKI-AKREV KKRRQE-LEY ENSTTRP00000004140/1-710 WHRRRILMGK IFRTWFEQSP TGRRRQEQ-F QEKI-AKREV KKRRQE-LEY 201 250 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 QVKAELESMP PRKSLRLQGL AQSTIIEIVS VQVPAQTPAS PAKDKVLSTS ENSBTAP00000026571/1-709 QAKAELESMP PRKSLRLQAL AQSTTVEIVP VQ--LQTSAL PAKDKVVSTS bmy_13861T0/1-710 QVKAELESMP PRKSLRLQGL AESTTVEIAP VQVPLQASAS PAKDKVVSTS ENSTTRP00000004140/1-710 QVKAELESMP PRKSLRLQGL AESTTVEIVP VQVPLQASAS PAKDKVVSTS 251 300 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 ENEISQKVSD SSVKRRPIVT PGVTGLRNLG NTCYMNSVLQ VLSHLLIFRQ ENSBTAP00000026571/1-709 EDVRLKKASD SSVKQRPTVT PGVTGLRNLG NTCYMNSVLQ VLSHLLIFRQ bmy_13861T0/1-710 EDVRLKEASD SSVKRRPIVT PGVTGLRNLG NTCYMNSVLQ VLSHLLIFRQ ENSTTRP00000004140/1-710 EDVRLKEASD SSVKRRPIVT PGVTGLRNLG NTCYMNSVLQ VLSHLLIFRQ 301 350 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 CFLKLDLNQW LAMTASEKTR SC-KHPPVTD TVVYQMNECQ EKDTGFVCSR ENSBTAP00000026571/1-709 CFLKLDLNQW LAVTASDKTR SSYKHPPVTD T-VYQMNECQ EKEPYSVCFR bmy_13861T0/1-710 CFLKLDLNQW LAVTASDKTR SSYKHPPITD T-VYQMNECQ EKETCSVRSR ENSTTRP00000004140/1-710 CFLKLDLNQW LAVTASDKTR SSYKHPPITD T-VYQMNECQ EKETCSVRSR 351 400 BACU000958/1-292 ---------- ---------- ---------- ---------- ---------- ENSP00000258499/1-712 QSSLSSGLSG GASKGRKMEL IQPKEPTSQY ISLCHELHTL FQVMWSGKWA ENSBTAP00000026571/1-709 HPSLSSGLSG GAPTSSKMEL IQPREPSSQY ISLCHELHTL FQVMWSGKWA bmy_13861T0/1-710 HPSLSSGLSG GASKSRKMEL IQPREPSSQY ISLCHELHTL FQVMWSGKWA ENSTTRP00000004140/1-710 HPSLSSGLSG GASKSRKMEL IQPREPSSQY ISLCHELHTL FQVMWSGKWA 401 450 BACU000958/1-292 ---------- ---------- ---QDAREII CELLDKIQHE LETTDTRIPS ENSP00000258499/1-712 LVSPFAMLHS VWRLIPAFRG YAQQDAQEFL CELLDKIQRE LETTGTSLPA ENSBTAP00000026571/1-709 LVSPFAMLHS VWRLIPAFRG YGQQDAQEFL CELLDKIQHE LETTGTRSPA bmy_13861T0/1-710 LVSPFAMLHS VWRLIPAFRG YAQQDAQEFL CELLDKIQHE LETTGTRLPA ENSTTRP00000004140/1-710 LVSPFAMLHS VWRLIPAFRG YAQQDAQEFL CELLDKIQHE LETTGTRLPA 451 500 BACU000958/1-292 LIPTSQRKVI KHFMNVVNNI FHRQLLSHVT CLACENKSNI IAPFWDLSLE ENSP00000258499/1-712 LIPTSQRKLI KQVLNVVNNI FHGQLLSQVT CLACDNKSNT IEPFWDLSLE ENSBTAP00000026571/1-709 LIPTSQRKLI KQVLNVVNNI FHGQLLSQVT CLACDSKSNT IEPFWDLSLE bmy_13861T0/1-710 LIPTSQRKLI KQVLNVVNNI FHGQLLSQVT CLACDNKSNT IEPFWDLSLE ENSTTRP00000004140/1-710 LIPTSQRKLI KQVLNVVNNI FHGQLLSQVT CLACDNKSNT IEPFWDLSLE 501 550 BACU000958/1-292 FPERYQCNGK DTTSQPCLVT KMLAKFTKTE ASEGKIYICD QCNSKHRRFS ENSP00000258499/1-712 FPERYQCSGK DIASQPCLVT EMLAKFTETE ALEGKIYVCD QCNSKRRRFS ENSBTAP00000026571/1-709 FPERYQCSGK DSASQPCLVT EMLAKFTETE ALEGKIYVCD QCNSKRRRFS bmy_13861T0/1-710 FPERYQCSGK DIASQPCLVT EMLAKFTETE ALEGKIYVCD QCNSKRRRFS ENSTTRP00000004140/1-710 FPERYQCSGK DIASQPCLVT EMLAKFTETE ALEGKIYICD QCNSKRRRFS 551 600 BACU000958/1-292 SKPVILTETP IQLMIFHLLQ VLRVHLKRFR WWSGRNNREK IGVHVGFEEI ENSP00000258499/1-712 SKPVVLTEAQ KQLMICHLPQ VLRLHLKRFR -WSGRNNREK IGVHVGFEEI ENSBTAP00000026571/1-709 SKPVLLTEAQ KQLMICHLPQ VLRLHLKRFR -WSGRNNREK IGVHVGFEEI bmy_13861T0/1-710 SKPVVLTEAQ KQLMICHLPQ VLRLHLKRFR -WSGRNNREK IGVHVGFEEI ENSTTRP00000004140/1-710 SKPVVLTEAQ KQLMICHLPQ VLRLHLKRFR -WSGHNNREK IGVHVGFEEI 601 650 BACU000958/1-292 LNMEPYCCRE SLKSLRPECF IYDLSAVVMH HGKGFGSGHY TAYCYNSEGG ENSP00000258499/1-712 LNMEPYCCRE TLKSLRPECF IYDLSAVVMH HGKGFGSGHY TAYCYNSEGG ENSBTAP00000026571/1-709 LNMEPYCCRE SLKSLRPECF LYDLSAVVMH HGKGFGSGHY TAYCYNSEGG bmy_13861T0/1-710 LNMEPYCCRE SLKSLRPECF IYDLSAVVMH HGKGFGSGHY TAYCYNSEGG ENSTTRP00000004140/1-710 LNMEPYCCRE SLKSLRPECY IYDLSAVVMH HGKGFGSGHY TAYCYNSEGG 651 700 BACU000958/1-292 FWVHCNDSKL SMCTMDEVCK AQAYILFYTQ RVTENGHSKL LPAELLSGSQ ENSP00000258499/1-712 FWVHCNDSKL SMCTMDEVCK AQAYILFYTQ RVTENGHSKL LPPELLLGSQ ENSBTAP00000026571/1-709 FWVHCNDSKL SMCTMDEVCK AQAYILFYTQ RVTENGHSKL LPPEFLSGSQ bmy_13861T0/1-710 FWVHCNDSKL SMCTMDEVCK AQAYILFYTQ RVTENGHSKL LPPELLSGSQ ENSTTRP00000004140/1-710 FWVHCNDSKL SMCTMDEVCK AQAYILFYTQ RVTENGHSKL LPPELLSGSQ 701 750 BACU000958/1-292 HPNEEADASC NEILS ENSP00000258499/1-712 HPNEDADTSS NEILS ENSBTAP00000026571/1-709 HPSEEAETSS NEILS bmy_13861T0/1-710 HPSEEADASC NEILS ENSTTRP00000004140/1-710 HPSEEADASS NEILS