KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:29:23 2014 Check: 00 .. Name: ENSTTRP00000004192/1-711 Len: 911 Check: 9610 Weight: 1.00 Name: ENSP00000327104/1-900 Len: 911 Check: 29 Weight: 1.00 Name: bmy_09894T0/1-574 Len: 911 Check: 7860 Weight: 1.00 Name: ENSBTAP00000026549/1-875 Len: 911 Check: 866 Weight: 1.00 Name: BACU018905/1-664 Len: 911 Check: 7529 Weight: 1.00 // 1 50 ENSTTRP00000004192/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000327104/1-900 MNYPGRGSPR SPEHN-GRGG GGGAWELGSD ARPAFGGGVC CFEHLPGGDP bmy_09894T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026549/1-875 MNYPGHGSPR SSERNGGRGG DGAAWELGSD TEPAFGGSVC RFDHLPVGEP BACU018905/1-664 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004192/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000327104/1-900 DDGDVPLALL RGEPGLHLAP GTDDHNHHLA LDPCLSDENY DFSSAESGSS bmy_09894T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026549/1-875 GDDEVPLALL RGEPGLHLAP GAEDHNHHLA LDPCLSDDNY DFSSAESGSS BACU018905/1-664 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004192/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000327104/1-900 LRYYSEGESG GGGSSLSLHP PQQPPLVPTN SGGGGATGGS PGERKRTRLG bmy_09894T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026549/1-875 LRYYSEGESG GGGSSSSLHP PQQ-PLVPSN SGGGGAAGGG PGERKRTRPG BACU018905/1-664 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000004192/1-711 ---------- ---------- ---------- ---------R IELAFRTLPQ ENSP00000327104/1-900 GPAARHRYEV VTELGPEEVR WFYKEDKKTW KPFIGYDSLR IELAFRTLLQ bmy_09894T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026549/1-875 GAAARHRYEV VTELGPEEVR WFYKEDKKTW KPFIGYDSLR IELAFRTLLQ BACU018905/1-664 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000004192/1-711 ATWARARAQD PDGDHVGGPA SPAGPASSSA EDDAEDRVCG FCPRIAGHGR ENSP00000327104/1-900 TTGARPQGGD RDGDHVC--- SPTGPASSSG EDDDEDRACG FCQSTTGHEP bmy_09894T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026549/1-875 ATGARARAQD PDGDHVCGPA SPAGPASSSV EDEDEDRVCG FCSRIAGHGR BACU018905/1-664 ---------- ---------- ---------- ---------- FCPRIAGHGR 251 300 ENSTTRP00000004192/1-711 EMEELVNIER VCVRGGLYEV DVTQGECYPV YWNQSDKIPV MRGQWFIDGT ENSP00000327104/1-900 EMVELVNIEP VCVRGGLYEV DVTQGECYPV YWNQADKIPV MRGQWFIDGT bmy_09894T0/1-574 MDEEFTVIKS FT-------- ---------- -YSQSDKIPV MRGQWFIDGT ENSBTAP00000026549/1-875 EMEELVNIER VCVRGGLYEV DVTQGECYPV YWNQSDKIPV MRGQWFIDGT BACU018905/1-664 EMEELVNIER VCVRGGLYEV DVTQGECYPV YWNQSDKIPV MRGQWFIDGT 301 350 ENSTTRP00000004192/1-711 WQPLEEEESN LIEQEHLSCF RGQQMQESFD VEVSKPIDGK D-------XX ENSP00000327104/1-900 WQPLEEEESN LIEQEHLNCF RGQQMQENFD IEVSKSIDGK D-------AV bmy_09894T0/1-574 WQPLEEEESN LIEQEHLSRF RGQQVQESFD IEVSKPIDGK DGSGINYSAI ENSBTAP00000026549/1-875 WQPLEEEESN LIEQEHLSRF RGQQMQESFD IEVSKPIDGK D-------AI BACU018905/1-664 WQPLEEEESN LIEQEHLSRF RGQQMQESFD IEVSKPIDGK D-------AI 351 400 ENSTTRP00000004192/1-711 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSSSGTRLH ENSP00000327104/1-900 HSFKLSRNHV DWHSVDEVYL YSDATTSKIA RTVTQKLGFS KASSSGTRLH bmy_09894T0/1-574 HSFKLSRNHV DWHSVDEVYL YSDATTSKIA RTVTQKLGFS KASSSGTRLH ENSBTAP00000026549/1-875 HSFKLSRNHV DWHSVDEVYL YSDATTSKIA RTVTQKLGFS KASSSGTRLH BACU018905/1-664 HSFKLSRNHV DWHSVDEVYL YSDATTSKIA RTVTQKLGFS KASSSGTRLH 401 450 ENSTTRP00000004192/1-711 RGYVEEATLE DKPSQTAHIV FVVHGIGQKM DQGRIIKNTA MMREAARKIE ENSP00000327104/1-900 RGYVEEATLE DKPSQTTHIV FVVHGIGQKM DQGRIIKNTA MMREAARKIE bmy_09894T0/1-574 RGYVEEATLE DKPSQTAHIV FVVHGIGQKM DQGRIIKNTA MMREAARKIE ENSBTAP00000026549/1-875 RGYVEEATLE DKPSQTTHIV FVVHGIGQKM DQGRIIKNTA MMREAARKIE BACU018905/1-664 RGYVEEATLE DKPSQTAHIV FVVHGIGQKM DQGRIIKNTA MMREAARKIE 451 500 ENSTTRP00000004192/1-711 ERHFSNHATH VEFLPVEWRS KLTLDGDTVD SITPDKVRGL RDMLNSSAMD ENSP00000327104/1-900 ERHFSNHATH VEFLPVEWRS KLTLDGDTVD SITPDKVRGL RDMLNSSAMD bmy_09894T0/1-574 ERHFSNHATH VEFLPVEWRS KLTLDGDTVD SITPDKVRGL RDMLNSSAMD ENSBTAP00000026549/1-875 ERHFSNHATH VEFLPVEWRS KLTLDGDTVD SITPDKVRGL RDMLNSSAMD BACU018905/1-664 ERHFSNHATH VEFLPVEWRS KLTLDGDTVD SITPDKVRGL RDMLNSSAMD 501 550 ENSTTRP00000004192/1-711 IMYYTSPLYR DELVKGLQQE LNRLYSLFC- -RPDFEK-GG KVS-VSHSLG ENSP00000327104/1-900 IMYYTSPLYR DELVKGLQQE LNRLYSLFCS RNPDFEEKGG KVSIVSHSLG bmy_09894T0/1-574 IMYYTSPLYR DELVKGLQQE LNRLYSLFCS RNPDFEEKGG KVSIVSHSLG ENSBTAP00000026549/1-875 IMYYTSPLYR DELVKGLQQE LNRLYSLFCS RNPNFEEKGG KVSIVSHSLG BACU018905/1-664 IMYYTSPLYR DELVKGLQQE LNRLYSLFCS RNPDFEEKGG KVSIVSHSLG 551 600 ENSTTRP00000004192/1-711 CVITYDIMTG WNPVRLYEQL LQKEEELPDE QWMSYEERHL LDELYITKQR ENSP00000327104/1-900 CVITYDIMTG WNPVRLYEQL LQKEEELPDE RWMSYEERHL LDELYITKRR bmy_09894T0/1-574 CVITYDIMTG WNPVRLYEQL LQKEEELPDE QWMSYEERHL LDELYITKQR ENSBTAP00000026549/1-875 CVITYDIMTG WNPVRLYEQL LQKEEELPDE RWMSYEERHL LDELYITKRR BACU018905/1-664 CVITYDIMTG WNPVRLYEQL LQKEEELPDE QWMSYEERHL LDELYITKQR 601 650 ENSTTRP00000004192/1-711 LRDIKKRLHG LKASSMTQTP ALKFKVENFF CMGSPLAVFL ALRGIRPGNT ENSP00000327104/1-900 LKEIEERLHG LKASSMTQTP ALKFKVENFF CMGSPLAVFL ALRGIRPGNT bmy_09894T0/1-574 LRDIEERLHG LKASSMTQTP ALKFKVENFF CMGSPLAVFL ALRGIRPGNT ENSBTAP00000026549/1-875 LREIEERLHG LKASSMTQTP ALKFKVENFF CMGSPLAVFL ALRGIRPGNT BACU018905/1-664 LRDIEERLHG LKASSMTQTP ALKFKVENFF CMGSPLAVFL ALRGIRPGNT 651 700 ENSTTRP00000004192/1-711 GCQDHILPRE ICNRLLNIFH PTDPVAYRLE PLILKHYSNI SPVQIHWYNT ENSP00000327104/1-900 GSQDHILPRE ICNRLLNIFH PTDPVAYRLE PLILKHYSNI SPVQIHWYNT bmy_09894T0/1-574 GSQDHILPRE ICNRLLNIFH PTDPVAYRLE PLILKHYSNI SPVQIHWYNT ENSBTAP00000026549/1-875 GSQDHILPRE ICNRLLNIFH PTDPVAYRLE PLILKHYSNI SPVQIHWYNT BACU018905/1-664 GSQDHILPKE ICNRLLNIFH PTDPVAYRLE PLILKHYSNI SPVQIHWYNT 701 750 ENSTTRP00000004192/1-711 SNPLPYEYMK PSFLHPAKEP TSISDSEGIS TIPSPVTSPV LSRRHYGESI ENSP00000327104/1-900 SNPLPYEHMK PSFLNPAKEP TSVSENEGIS TIPSPVTSPV LSRRHYGESI bmy_09894T0/1-574 SNPLPYEYMK PSFLHPAKEP TSISDSEGIS TIPSPVTSPV LSRRHYGESI ENSBTAP00000026549/1-875 SNPLPYEYMK PSFLHPAKDP TSISENEGIS TIPSPVTSPV LSRRHYGESI BACU018905/1-664 SNPLPYEYMK PSFLHPAKEP TSISDSEGIS TIPSPVTSPV LSRRHYGESI 751 800 ENSTTRP00000004192/1-711 TNIGKASILX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327104/1-900 TNIGKASILG AASIGKGLGG MLFSRFGRSS TTQSSETSKD SMEDEKKPVA bmy_09894T0/1-574 TNIGKASILG AASIGKGLGG MLFSRFGRSS ASQPSEASRD SVEDEKKPVA ENSBTAP00000026549/1-875 TNIGKASILG AASIGKGLGG MLFSRFGRSS ASQPSETSRD SIEDEKKPVA BACU018905/1-664 TNIGKASILG AASIGKGLGG MLFSRFGRSS ASQPSEASRD SVEDEKKPVA 801 850 ENSTTRP00000004192/1-711 XXXXXXXXXX XXXXXXXXXX XXXXFRLQES FFNLPQLLFP ENVMQNKDNT ENSP00000327104/1-900 SPSATTVGTQ TLPHSSSGFL DSAYFRLQES FFNLPQLLFP ENVMQNKDNA bmy_09894T0/1-574 SPPTSTVATQ TLAHSSSGFL DSA------- ---------- ---------- ENSBTAP00000026549/1-875 SPPMTTVATQ TLPHSSSGFL DSA------- ---------- ---------- BACU018905/1-664 SPPTSTVATQ TLAHSSSGFL DSAYFRLQES FFNLPQLLFP ENVMQNKDNT 851 900 ENSTTRP00000004192/1-711 LVELDHRIDF ELREGLVESR YWSAVTSHTA YWSSLDVALF LLTFMYKHEH ENSP00000327104/1-900 LVELDHRIDF ELREGLVESR YWSAVTSHTA YWSSLDVALF LLTFMYKHEH bmy_09894T0/1-574 ---------- ---------- ---------- ---SLKIHIF RALFSYCVCY ENSBTAP00000026549/1-875 -LELDHRIDF ELREGLVESR YWSAVTSHTA YWSSLDVALF LLTFMYKHEH BACU018905/1-664 LVELDHRIDF ELREGLVESR YWSAVTSHTA YWSSLDVALF LLTFMYKHEH 901 950 ENSTTRP00000004192/1-711 DNSAKPNFDP V ENSP00000327104/1-900 DDDAKPNLDP I bmy_09894T0/1-574 SEF------- - ENSBTAP00000026549/1-875 DNNVKPSLDP V BACU018905/1-664 DNSAKPNFDP V