KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:29:17 2014 Check: 00 .. Name: ENSP00000230431/1-174 Len: 235 Check: 8020 Weight: 1.00 Name: ENSBTAP00000026530/1-170 Len: 235 Check: 6929 Weight: 1.00 Name: bmy_00057T0/1-215 Len: 235 Check: 8352 Weight: 1.00 Name: ENSTTRP00000006641/1-152 Len: 235 Check: 7880 Weight: 1.00 // 1 50 ENSP00000230431/1-174 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026530/1-170 ---------- ---------- ---------- ---------- ---------- bmy_00057T0/1-215 MHCAASISTS PDITSSPPRL LHHRPCSDIT VYSAPFSTPA ALGLSPPRVG ENSTTRP00000006641/1-152 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000230431/1-174 --------MA AAMVPGRSES WERGEPGRPA LYFCGSIRGG REDRTLYERI ENSBTAP00000026530/1-170 --------MA AA------AA AGTVDPGRLS LYFCGSIRGG REDRELYVRI bmy_00057T0/1-215 RVTCRRRAPP GAGREVRRRR PERGEPGRPS LYFGGSIPGG REDRELYGRI ENSTTRP00000006641/1-152 ---------- --------AA AERAEPGRPS LYFGGSIPGG REDRELYGRI 101 150 ENSP00000230431/1-174 VSRLRRFGTV LTEHVAAA-- ELGARGEEAA GGDRLIHEQD LEWLQQADVV ENSBTAP00000026530/1-170 VSRLRRFGVV LTEHVAAAEV DESATGEEAA GGDKLIHDRD LAWLQQADVV bmy_00057T0/1-215 VSRLRRFGAE LTEHVATA-- DQGARSRVRL G--------- LLFLPSGCV- ENSTTRP00000006641/1-152 VSRLRRFGAE LTEHLAAA-- DQGAGGEEAA GGDRLIHEQD PAWLQQAEVV 151 200 ENSP00000230431/1-174 VAEVTQPSLG VGYELGRAVA FNKRILCLFR PQSGRVLSAM IRGAADGSRF ENSBTAP00000026530/1-170 VAEVTQPSLG VGYELGRAVA LHKPVLCLFR PKSGRVLSAM IRGAANGSRF bmy_00057T0/1-215 --EVAQPSLG VGYELGRAVA RNKPVLCLFR PQSGRVLSAT IRGAAEGSRV ENSTTRP00000006641/1-152 V-EVAQPSLG IGYELDRAVA RSKPVLCLFR PQSDRMLSDT IRGVAEGSQV 201 250 ENSP00000230431/1-174 QVWDYEEGEV EA-LLDRYFE ADPPGQVAAS PDPTT ENSBTAP00000026530/1-170 QVWDYEEAEV EA-LLDRYFE AYPPEQVAAS PDPTA bmy_00057T0/1-215 QVWGYEAEEV AACWMGTLRL ILPSG--WLL P---- ENSTTRP00000006641/1-152 QVWGYEAAEA AD-------- --PPE--VAS PDPTT