KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:59 2014 Check: 00 .. Name: ENSP00000409279/1-1049 Len: 1115 Check: 3450 Weight: 1.00 Name: ENSBTAP00000026452/1-1109 Len: 1115 Check: 1072 Weight: 1.00 Name: ENSTTRP00000011571/1-1103 Len: 1115 Check: 4792 Weight: 1.00 Name: bmy_03470T0/1-1004 Len: 1115 Check: 8062 Weight: 1.00 Name: BACU013552/1-460 Len: 1115 Check: 3203 Weight: 1.00 // 1 50 ENSP00000409279/1-1049 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026452/1-1109 MEAAVGVPDG GDRGGAAPRE DATPMDAYLR TLGLYRKLVA KDGSCLFRAV ENSTTRP00000011571/1-1103 MEAAVGAPDG GDQGGAAPRE DATPMDAYLR KLGLYRKLVA KDGSCLFRAV bmy_03470T0/1-1004 ---------- ---------- ---------- ---------- ---------- BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000409279/1-1049 ---------- -----MACIH YLRENREKFE AFIEGSFEEY LKRLENPQEW ENSBTAP00000026452/1-1109 AEQVLHSQSR HVEVRMACIH YLRENREKFE EFIEGSFEEY LKRLENPQEW ENSTTRP00000011571/1-1103 AEQVLHSQSR HVEVRMACIH YLRENREKFE AFIEGSFEEY LKRLENPQEW bmy_03470T0/1-1004 ---------- -----MACIH YLRENREKFE AFIEGSFEEY LKRLENPQEW BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000409279/1-1049 VGQVEISALS LMYRKDFIIY REPNVSPSQV TENNFPEKVL LCFSNGNHYD ENSBTAP00000026452/1-1109 VGQVEISALS LMYRKDFIIY QKPNVSPSQV TENNFPEKVL LCFSNGNHYD ENSTTRP00000011571/1-1103 VGQVEISALS LMYRKDFIIY REPNVSPSQV TENNFPEKVL LCFSNGNHYD bmy_03470T0/1-1004 VGQVEISALS LMYRKDFIIY REPNVSPSQV TENNFPEKVL LCFSNGNHYD BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000409279/1-1049 IVYPIKYKES SAMCQSLLYE LLYEKVFKTD VSKIVMELDT LEVADEDNSE ENSBTAP00000026452/1-1109 IVYPIKYKES SAMCQSLLYE LLYEKVFKTD VSKILMGLDS SEVADEDNSE ENSTTRP00000011571/1-1103 IVYPIKYKES SAVCQSLLYE LLYEKVFKTD VSKILMGLDT SEVADENNSE bmy_03470T0/1-1004 IVYPIKYKES SAVCQSI--- ---------- ---------- ---------- BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000409279/1-1049 ISDSEDDSCK SKTAAAAADV NGFKPLSGNE QLKNNGNSTS LPLSRKVLKS ENSBTAP00000026452/1-1109 ISDSEDDSCK SKP-TTINDV NGFKTLSSDQ HPKSNGNSPS LPLSRKVLKS ENSTTRP00000011571/1-1103 ISDSEDDSCK SKT-TTVNNV NGFKSLSSDQ HPKSSGNSPS LPLSRKVLKS bmy_03470T0/1-1004 -----QKLTQ SKT-TTVNDV NGFKSLSSDQ HPKSNGNSPS LPLSRKVLKS BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000409279/1-1049 LNPAVYRNVE YEIWLKSKQA QQKRDYSIAA GLQYEVGDKC QVRLDHNGKF ENSBTAP00000026452/1-1109 LSPAVYRNVE YEIWLKSKQA QQKHDYSIAA GLQYEVGDKC QVRLDHDGKF ENSTTRP00000011571/1-1103 LSPAVYRNVE YEIWLKSKQA QQKHDYSIAA GLQYEVGDKC QVRLDHNGKF bmy_03470T0/1-1004 LSPAVYRNVE YEIWLKSKQA QQKHDYSIAA GLQYEVGDKC QVRLDHNGKF BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000409279/1-1049 LNADVQGIHS ENGPVLVEEL GKKHTSKNLK APPPESWNTV SGKKMKKPST ENSBTAP00000026452/1-1109 SNADFQGVHA ENGPVLVAEL GKKYSPKNLK PPASESWNTV SGKKMKKPP- ENSTTRP00000011571/1-1103 SNADFQGVHS ENGPVLVEEL GKXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03470T0/1-1004 SNADFQGVHS ENGPVLVEEL GKKLSPKNLR PPSSESWNTV AGKKMKKPP- BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000409279/1-1049 SGQNFHSDVD YRGPKNPSKP IKAPSALPPR LQHPSGVRQH AFSSHSSGSQ ENSBTAP00000026452/1-1109 SGQNFHSDMD YRGPKNSSKP IKAPSALPPR LQHPSGARQH ASSGHSAAPQ ENSTTRP00000011571/1-1103 XXXXXXXXAD YRGPKAPAKP GKAPPTLPL- LQHPPGLRQR VPPGHSAAPQ bmy_03470T0/1-1004 SGQNFHCDAD YRGPKAPAKP GKAPPALPPR LQHPPGLRQR APPGHSAAPQ BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000409279/1-1049 SQKFSSEHKN LSRTPSQIIR KPDRERVEDF DHTSRESNYF GLSPEERREK ENSBTAP00000026452/1-1109 SQKTSSEHKN LSRTPSQIIR KPDRERAEDF DATTREPNYF GLSPEERREK ENSTTRP00000011571/1-1103 SQKPSSEHRS LSRTPTQATR -PDRERAE-- DDTTRESNY- GLSPEERREK bmy_03470T0/1-1004 SQKPSGEHRG LSRTPTQATR KPDRERAEDF DATTRESNYF GLSPEERREK BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000409279/1-1049 QAIEESRLLY EIQNRDEQAF PALSSSSVNQ SASQSSNPCV QRKSSHVGDR ENSBTAP00000026452/1-1109 QAIEESRLLY EIQNRDEQAF PALSSSSVSQ SASQSSNPGV QRKSSHGSDR ENSTTRP00000011571/1-1103 QAIEESRLLY EIQNRDEQAF PALSSSSVSQ SASXXXXXXX XXXXXXXXXX bmy_03470T0/1-1004 QAIEESRLLY EIQNRDEQAF PALSSSSVSQ SASQGSNPGV QRKSSHGSDR BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000409279/1-1049 KGSRRRMDTE ERKDKDSIHG HSQLDKRPEP STLENITDDK YATVSSPSKS ENSBTAP00000026452/1-1109 KGSRRRMDTE ERKDKDSVHG HISLDKKPEP GTLENIGNDK CARISSPSKS ENSTTRP00000011571/1-1103 XXXXXXXXXX XXXXXXSVHG HIPLDKKPEP GTLENISNDK CSRITSP--S bmy_03470T0/1-1004 KGSRRRMDTE ERKDKDSVHG HVPLDKKPEP GTLENISNDK CSRITSP--S BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000409279/1-1049 KKLECPSPAE QKPAEHVSLS NPAPLLVSPE VHLTPAVPSL PATVPAWPSE ENSBTAP00000026452/1-1109 KKLECPPPTE QKPAEHVSLS NPAPLLVSPE VHLTPAVPSL PATVPAWPSE ENSTTRP00000011571/1-1103 KKLECPPPTE QKPAEHVCLS SPAPLLVSPE VHLTPAVPSL PATVPAWPSE bmy_03470T0/1-1004 KKLECPPPTE QKPAEHVCLS NPAPLLVSPE VHLTPAVPSL PATVPAWPSE BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000409279/1-1049 PTTFGPTGVP APIPVLSVTQ TLTTGPDSAV SQAHLT-PSP VPVSIQAVNQ ENSBTAP00000026452/1-1109 PTTFGPTGVP AQIPVLSVTQ TLTTGPDSAV SQAHLT-PSP VPVSIQAVNQ ENSTTRP00000011571/1-1103 PTTFGPTGVP AQIPVLSVTQ TLTTGPDSAV SQAHLTKKNP VPVSIQAVNH bmy_03470T0/1-1004 PTTFGPTGVP AQIPVLSVTQ TLTTGPDSVV SQAHLT-PSP VPVSIQAVNQ BACU013552/1-460 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000409279/1-1049 PLMPLPQTLS LYQDPLYPGF PCNEKGDRAI VPPYSLCQTG EDLPKDKNIL ENSBTAP00000026452/1-1109 PLMPLPQTLS LYQDPLYPGF PCNEKGDRAI APPYSLCHTG EDLPKDKNIL ENSTTRP00000011571/1-1103 PKRALPQTLS L-QDPSXXGF PCNEKGDRAI APPYSLCHTG EDLPKDKNIL bmy_03470T0/1-1004 PLMPLPQTLS LYQDPLYPGF PCNEKGDRAI APPYSLCHTG EDLPKDKNIL BACU013552/1-460 --MPLPQTLS LYQDPLYPGF PCNEKGDRAI APPYSLCHTG EDLPKDKNIL 701 750 ENSP00000409279/1-1049 RFFFNLGVKA YSCPMWAPHS YLYPLHQAYL AACRMYPKVP VPVYPHNPWF ENSBTAP00000026452/1-1109 RFFFNLGVKA YSCPMWAPHS YLYPLHQAYL AACRMYPKVP VPMYPQNPWF ENSTTRP00000011571/1-1103 RFFFNLGVKA YSCPMWAPHS YLYPLHQAYL AACRIYPKVP VPVYPQNPWF bmy_03470T0/1-1004 RFFFNLGVKA YSCPMWAPHS YLYPLHQAYL AACRMYPKVP VPMCPQNPWF BACU013552/1-460 RFFFNLGVKA YSCPMWAPHS YLYPLHQAYL AACRMYPKVP VPMYPQNPWF 751 800 ENSP00000409279/1-1049 QEAPAAQNES DCTCTDAHFP MQTEASVNGQ MPQPEIGPPT FSSPLVIPPS ENSBTAP00000026452/1-1109 QEPPSAQNES DCTCPDAHFP MEPEGSVNGQ MPQAEMGPPA FSSPLVMPPS ENSTTRP00000011571/1-1103 QEAPSAQNES DCACPDGHFP VQPEASVNGQ MPQAEIGPPT FSSTLVIPPS bmy_03470T0/1-1004 QEGPSAPNES DCTCPDAHFP VQPEASVNGQ MPQAETGPPT FSSALVIPPS BACU013552/1-460 QEGPSAPNES DCTCPDAHFP GQPEASVNGQ MPQAETGPPT FSSALVIPPS 801 850 ENSP00000409279/1-1049 QVSESHGQLS YQADLESETP GQLLHADYEE SLSGKNMFPQ PSFGPNPFLG ENSBTAP00000026452/1-1109 QVSDSHGQLS YPADLESENA GQLLHADYEE SLSSKNMFPQ PSFGPNPFLG ENSTTRP00000011571/1-1103 QVSESHGQLS YQADLESENS GQLLHAEYEE SLSGKNMFPQ PSFGPNPFLG bmy_03470T0/1-1004 QVSESHGQLS YQADLESENS GQLLHAEYEE SLSGKNMFPQ PSFGPNPFLG BACU013552/1-460 QVSESHGQLS YQADLESENS GQLLHAEYEE SLSGKNMFPQ PSFGPNPFLG 851 900 ENSP00000409279/1-1049 PVPIAPPFFP HVWYGYPFQG FIENPVMRQN IVLPSDEKGE LDLSLENLDL ENSBTAP00000026452/1-1109 PVPIAPPFFP HVWYGYPFQG FIENPVMRQN IVLPSDEKGE LDLPLENLDL ENSTTRP00000011571/1-1103 PVPIAPPFFP HVWYGYPFQG FIENPVMRQN IVLPSDEKGE LDLPLENLDL bmy_03470T0/1-1004 PVPIAPPFFP HVWYGYPFQG FIENPVMRQN IVLPSDEKGE LDLPLENLDL BACU013552/1-460 PVPIAPPFFP HVWYGYPFQG FIENPVMRQN IVLPSDEKGE LDLPLENLDL 901 950 ENSP00000409279/1-1049 SKDCGSVSTV DEFPEARGEH VHSLPEASVS SKPDEGRTEQ SSQTRKADTA ENSBTAP00000026452/1-1109 SKECASVSAA EEFPEAGGED PHAPPEAGAS K--SDGRAER SSQTPKAEPA ENSTTRP00000011571/1-1103 SKECASVSAA DEFPEAGGED THPLPEASVS E--HGGQVEQ SSQTPKSELA bmy_03470T0/1-1004 SKECASVSAA XEFPEAGGED THPLPEASVS E--HEGQAEQ SSQTPKADLA BACU013552/1-460 SKECASVSAA DEFPEAGGED THPLPEASVS E--HEGQAEQ SSQTPKADLA 951 1000 ENSP00000409279/1-1049 LASIPPVAEG KAHPPTQILN RERETVPVEL EPKRTIQSLK EKTEKVKDPK ENSBTAP00000026452/1-1109 AAPGPPAAEG EAHVPAQLLN REREAGPAGL EPKRTIPSLK EKPEKGKEPK ENSTTRP00000011571/1-1103 LALVPPVAEG KARLPTPVLN REREAVPVEP EPKRTIPSLK EKPEKVKDPK bmy_03470T0/1-1004 LAPIPPVAEG KAHLPAQILN RERETVPVEL EPKRTIPSLK EKPEKVKDPK BACU013552/1-460 LAPVPPVAEG KAHLPAQILN RERETVPVEL EPKRTIPSLK EKPEKVKDPK 1001 1050 ENSP00000409279/1-1049 TAADVVSPGA NSVDSRVQRP KEESSEDENE VSNILRSGRS KQFYNQTYGS ENSBTAP00000026452/1-1109 TAADVVS-GA NSVDSRVQRP KEESSEDENE VSHILRSGRS KQFYNQTFGG ENSTTRP00000011571/1-1103 TAADAVS-GA SSVDNRVPRP KEESSEDESE VSDILRSGRS KQFYNQTYGG bmy_03470T0/1-1004 AAADAVS-GA SSVDSRVPRP KEESSEDESE VSDILRSGRS KQFYNQTYGG BACU013552/1-460 AAADAVS-GA SSVDSRVPRP KEESSEDESE VSDILRSGRS KQFYNQTYGG 1051 1100 ENSP00000409279/1-1049 RKYKSDWGYS GRGGYQHVRS EESWKGQPSR SRDEGYQYHR NVRGRPFRGD ENSBTAP00000026452/1-1109 RKYKSDWGFS GRGGYPHARG EESWKGQPSR SRDEGYQYHR NARGRPYRGD ENSTTRP00000011571/1-1103 RKYKSDWGYS GRGGYPHVRG EESWKGQPSR SRDEGYQYHR NARGRPYRGD bmy_03470T0/1-1004 RKYKSDWGYS GRGGYPHVRG EESWKGQPSR SRDEGYQYHR NARGRPYRGD BACU013552/1-460 RKYKSDWGYS GRGGYPHVRG EESWKGQPSR SREEGYQYHR NARGRPYRGD 1101 1150 ENSP00000409279/1-1049 RRRSGMGDGH RGQHT ENSBTAP00000026452/1-1109 RRRSGMGDGH RGQHT ENSTTRP00000011571/1-1103 RRRSGLGDGH RGQHT bmy_03470T0/1-1004 RRRSGVGDGH RGQHT BACU013552/1-460 RRRSGVGDGH RGQHT