KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:33 2014 Check: 00 .. Name: ENSTTRP00000006169/1-675 Len: 729 Check: 2258 Weight: 1.00 Name: ENSP00000302537/1-714 Len: 729 Check: 4461 Weight: 1.00 Name: ENSBTAP00000026305/1-723 Len: 729 Check: 62 Weight: 1.00 Name: bmy_14382T0/1-720 Len: 729 Check: 1739 Weight: 1.00 Name: BACU016444/1-695 Len: 729 Check: 7795 Weight: 1.00 // 1 50 ENSTTRP00000006169/1-675 MPVRFKGLSE YQRNFLWKKS YLSESCNSSL GRRYPWAGLR SDQLGITKEP ENSP00000302537/1-714 MPVRFKGLSE YQRNFLWKKS YLSESCNSSV GRKYPWAGLR SDQLGITKEP ENSBTAP00000026305/1-723 MPVRFKGLSE YQRNFLWKKS YLSESCNSSM GRRHPWAGLR SDQLGITREP bmy_14382T0/1-720 MPVRFKGLSE YQRNFMWKKS YLSESCNSSV GRRYPWAGLR SDQLGITKEP BACU016444/1-695 MPVRFKGLSE YQRNFLWKKS YLSESCNSSV GRRYPWAGLR SDQLGITKEP 51 100 ENSTTRP00000006169/1-675 SFISKRRVPH HDPQISKSLE WNGATSENAV VVSPEPEAPR TPEP---EQK ENSP00000302537/1-714 SFISKRRVPY HDPQISKSLE WNGAISESNV VASPEPEAPE TPKSQEAEQK ENSBTAP00000026305/1-723 SFISKRRVPH HDPQISKSLE WNAATSENDV VLSPETEAPR TPESQEAEQT bmy_14382T0/1-720 SFISKRRVPH HDPQISKSLE WNGATSENAV VVSPEPEAPR TPEPQEAEQK BACU016444/1-695 SFISKRRVPH HDPQISKSLE WNRATSENVV VVSPEPEAPR TPEPQEAEQK 101 150 ENSTTRP00000006169/1-675 EDVNQERVLA LDASRVPKRT RSHSADSRAE GASEIVENKE AIVANHVPVN ENSP00000302537/1-714 -DVTQERVHS LEASRVPKRT RSHSADSRAE GASD-VENNE GV-TNHTPVN ENSBTAP00000026305/1-723 -DVNQERLLA VEASRGPKRT RSHSADSRSE GASDIVENKE DIKANDVPAN bmy_14382T0/1-720 EDVNQEXVLA LDASRVPKRT RSHSADSRAE GASDIVENKE DVVANHVPVN BACU016444/1-695 EDVNQERVLA LDASRVPKRT RSHSADSRAE GASDIVENKE DVVANHVPVN 151 200 ENSTTRP00000006169/1-675 ENVELEHSTK LLSENIDGGL DRLLQKKAGL TVVPSHNVLR NSEYQRQFVW ENSP00000302537/1-714 ENVELEHSTK VLSENVDNGL DRLLRKKAGL TVVPSYNALR NSEYQRQFVW ENSBTAP00000026305/1-723 ENVELKHSTK PLSENVDDRL NRLLQKKAGL TVVPSHNVLR NSEYQRQFVW bmy_14382T0/1-720 ENVELEHSTK LPSENIDGGL DRLLQKKAGL TVVPSHNVLR NSEYQRQFVW BACU016444/1-695 ENVELEHSTK LPSENVDGGL DRLLQKKAGL TVVPSHNVLR NSEYQRQFVW 201 250 ENSTTRP00000006169/1-675 KTPKETTSAF AANQVFHNKS KFVPQFKGNS FIHETEYKRN FKCI------ ENSP00000302537/1-714 KTSKETAPAF AANQVFHNKS QFVPPFKGNS VIHETEYKRN FKGLSPVKEP ENSBTAP00000026305/1-723 KTPKQPAPAF AANQVFHNKS KFIPQFKGNS FIHETEYKRN FKGLSPVKEP bmy_14382T0/1-720 KTPKETASAF AANQVFHNKS KFVPQFKGNS VIHETEYKRN FKGLSPVKEP BACU016444/1-695 KTPKETASAF AANQVFHNKS KFVPQFKGNS VIHETEYKRN FKGLSPVKEP 251 300 ENSTTRP00000006169/1-675 ---------- ---------- YNKTDDPLKL EAEMESKDLN QPKKKLTPWR ENSP00000302537/1-714 KLRNDLRENR NLETVSPERK SNKIDDRLKL EAEMELKDLH QPKRKLTPWK ENSBTAP00000026305/1-723 KLRSHLKENG NFETISPEKK CNKADDPLKS EAEMESKNSN QPKKKLTPWR bmy_14382T0/1-720 KRRNHLKENG NFETISPEKK YNKTDDPLKL EAEMESKDSN QPKKKLTPWR BACU016444/1-695 KRRNHLKENG NFETVSPEKK YNKTDDPLKL EAEMESKDSN PPKKKLTPWR 301 350 ENSTTRP00000006169/1-675 HQRLGKVNSE YRAKFLSPAQ YFYKAGTWTR VKENIPNQ-- --------XX ENSP00000302537/1-714 HQRLGKVNSE YRAKFLSPAQ YLYKAGAWTH VKGNMPNQ-- --------VK ENSBTAP00000026305/1-723 HQRLGKVNSE YRAKFLSPAQ YLYKAGAWTR VKENIPNQAS LNAMWYAEVK bmy_14382T0/1-720 HQRLGKVNSE YRAKFLSPAQ YLYKAGTWTR VKENIPNQGS LNAMWYAEVK BACU016444/1-695 HQRLGKVNSE YRAKFLSPAQ YLYKAGTWTH VKENIPNQGS LNAMWYAEVK 351 400 ENSTTRP00000006169/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302537/1-714 ELREKAEFYR KRVQGTHFSR DHLNQILSDS NCCWDVSSTT SSEGTVSSNI ENSBTAP00000026305/1-723 ELREKAEFYR KRVQGTHFSR DHLNQILSEN NRCWDVSSTT SSEGTISSNI bmy_14382T0/1-720 ELREKAEFYR KRVQGTHFSR DHLNQILSEN NHCWDVSSTT SSEGTISSNI BACU016444/1-695 ELREKAEFYR KRVQGTHFSR DHLNQILSEN NHCWDVSSTT SSEGTISSNI 401 450 ENSTTRP00000006169/1-675 XXXXXXXDPT SHKTLQKYPS TKLEEKRPIL EEQPQKTTTE KLGVSDAPIP ENSP00000302537/1-714 RALDLAGDPT SHKTLQKCPS TEPEEKGNIV EEQPQKNTTE KLGVSAPTIP ENSBTAP00000026305/1-723 RALDLAGDPT SHKTSQKCPS TQLEEKRTIL EEQPQKTTTE KLGVSNAPIP bmy_14382T0/1-720 RALDLAGDPT SHKTLQKCPS TKLEEKRPIL EEQPQKTTTE KLGVSDAPIP BACU016444/1-695 RALDLAGDPT SHKTLQKCPS TKLEEKRPIL EEQPQKTTTE KLGVSDAPIP 451 500 ENSTTRP00000006169/1-675 VRRRLAWDAE NTTEDTQKQP -REEEE---- EEERD----K QVNVGELEKL ENSP00000302537/1-714 VRRRLAWDTE NTSEDVQKQP -GEKEEEDDN EEEGDRKTGK QAFMGEQEKL ENSBTAP00000026305/1-723 VRRRLAWDAE DTTEDVQKQP SGEEEKGEEV KEEGD----K QVNVEELEKL bmy_14382T0/1-720 VRRRLAWDAE NTTEDTQKQP -REEEE---- EEERD----K QVNVGELEKL BACU016444/1-695 VRRRLAWDAE NTTEDTQKQP -REEEE---- EEERD----K QVNVGELEKL 501 550 ENSTTRP00000006169/1-675 EVQEKSKADK IKEGSESSSM SSGKGGRLPT PKLRELGGIQ RTHHDLTTPA ENSP00000302537/1-714 DVREKSKADK MKEGSD-SSV SSEKGGRLPT PKLRELGGIQ RTHHDLTTPA ENSBTAP00000026305/1-723 EVQEKSKADK IKEESESSSM SSGKGGRLPT PKLRELGGIQ RTHHDLTTPA bmy_14382T0/1-720 EVQEKSKADK IKEGSESSSV SSGKGGRLPT PKLRELGGIQ RTHHDLTTPA BACU016444/1-695 EVQEKSKADK IKEGSESSSV SSGKGGRLPT PKLRELGGIQ RTHHDLTTPA 551 600 ENSTTRP00000006169/1-675 VGGAVLVSPS KMKPSVAEQR KRMSSQDGLE TF------RK SRAIPLXXXX ENSP00000302537/1-714 VGGAVLVSPS KMKPPAPEQR KRMTSQDCLE TSKNDFTKKE SRAVSLLTSP ENSBTAP00000026305/1-723 VGGAVLVSPS KVKPPVIEQR KRISSQDGLE TLKNDFRKKE SRAISLLTSP bmy_14382T0/1-720 VGGAVLVSPS KVKPSVAEQR KRMSSQDGLE TLKNDFRKKE SRAISLLTSP BACU016444/1-695 VGGAVLVSPS KVKPSVAEQR KRMSSQDGLE TLKNDFRKKE SRAISLLTSP 601 650 ENSTTRP00000006169/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302537/1-714 AAGIKTVDPL PLREDSEDNI HKFAEATLPV SKIPKYPTNP PGQLPSPPHV ENSBTAP00000026305/1-723 AAGIKTVDPL P-REDSEPNI PKFVETTLPV SKMPEYPPNT PGKSASPPCA bmy_14382T0/1-720 AAGLKTIDPL PLREDSEPNI PKFAETTLPV SKIPENPTNT PGQSPSPPCA BACU016444/1-695 AAGLKTIDPL PLREDSEPNV PRFAETTLPV SKIPENPTNT PGQSPSPPCA 651 700 ENSTTRP00000006169/1-675 XXXXXXXXXX XXXXXXXXXX XXXGKSRMNN FQLPQQEAFN DEDEDRLSEI ENSP00000302537/1-714 PSYWHPSRRI QGSLRDPEFQ HNVGKARMNN LQLPQHEAFN DEDEDRLSEI ENSBTAP00000026305/1-723 TSYWHPSRRI QGSLRDPEFQ HNVGKSRMNN FQLHQHEAFN DEDEDRLSEI bmy_14382T0/1-720 PSYWRPSRRI QGSLRDPEFQ HNVGKSRMNN FQLPQQEAFN DEDEDRLSEI BACU016444/1-695 PSYWHPSRRI QGSLRDPEFQ HNVGKSRMNN FQLPQQEAFN DEG------- 701 750 ENSTTRP00000006169/1-675 SARSAASSLR AFQTLSRAQR RKENFWGKT ENSP00000302537/1-714 SARSAASSLR AFQTLARAKK RKENFWGKT ENSBTAP00000026305/1-723 SARSAASSLQ ALQTLARAQK RKENFWGKT bmy_14382T0/1-720 SARSAASSLR AFQTLARAQR RKENFWGKT BACU016444/1-695 ---------- --ILIVKEHK IKV------