KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:29 2014 Check: 00 .. Name: ENSTTRP00000004027/1-1070 Len: 1126 Check: 5572 Weight: 1.00 Name: ENSP00000387362/1-1073 Len: 1126 Check: 592 Weight: 1.00 Name: ENSBTAP00000026289/1-1067 Len: 1126 Check: 1492 Weight: 1.00 Name: bmy_03272T0/1-1055 Len: 1126 Check: 7443 Weight: 1.00 Name: BACU017318/1-1080 Len: 1126 Check: 6145 Weight: 1.00 // 1 50 ENSTTRP00000004027/1-1070 MTDQENNNNI SSNPFAALFG SLADAKQFAA IQKEQLKQQS DELPASPDDS ENSP00000387362/1-1073 MTDQENNNNI SSNPFAALFG SLADAKQFAA IQKEQLKQQS DELPASPDDS ENSBTAP00000026289/1-1067 MTDQENNNNI SSNPFAALFG SLADAKQFAA IQKEQLKQQS DELPASPDDS bmy_03272T0/1-1055 MTDQENNNNI SSNPFAALFG SLADAKQFAA IQKEQLKQQS DELPASPDDS BACU017318/1-1080 MTDQENNNNI SSNPFAALFG SLADAKQFAA IQKEQLKQQS DELPASPDDS 51 100 ENSTTRP00000004027/1-1070 DNSVSESLDE FDYSVAEISR SFRSQQEICE QLNINHMIQR IFLITLDNSD ENSP00000387362/1-1073 DNSVSESLDE FDYSVAEISR SFRSQQEICE QLNINHMIQR IFLITLDNSD ENSBTAP00000026289/1-1067 DNSVSESLDE FDYSVAEISR SFRSQQEICE QLNINHMIQR IFLITLDNSD bmy_03272T0/1-1055 DNSVSESLDE FDYSVAEISR SFRSQQEICE QLNINHMIQR IFLITLDNSD BACU017318/1-1080 DNSVSESLDE FDYSVAEISR SFRSQQEICE QLNINHMIQR IFLITLDNSD 101 150 ENSTTRP00000004027/1-1070 PSLKSGNGIP SRCVYLEEMA VDLEDQDWLD MNNVEQAVFT RLLLQDPGNH ENSP00000387362/1-1073 PSLKSGNGIP SRCVYLEEMA VELEDQDWLD MSNVEQALFA RLLLQDPGNH ENSBTAP00000026289/1-1067 PSLKSGNGIP SRCVYLEEMA VDLEDQDWLD MNNVEQAVFT RLLLQDPGNH bmy_03272T0/1-1055 PSLKSGNGIP SRCVYLEEMA VDLEDQDWLD MNNVEQ---- ---------- BACU017318/1-1080 PSLKSGNGIP SRCVYLEEMA VDLEDQDWLD MNNVEQAVFT RLLLQDPGNH 151 200 ENSTTRP00000004027/1-1070 LINMTSSTTL NLSADRDAGE RHIFCYLYSC FQRAKEEITK VPENLLPFAV ENSP00000387362/1-1073 LINMTSSTTL NLSADRDAGE RHIFCYLYSC FQRAKEEITK VPENLLPFAV ENSBTAP00000026289/1-1067 LINMTSSTTL NLSADRDAGE KHIFCYLYSC FQRAKEEITK VPENLLPFAV bmy_03272T0/1-1055 ---------- ---------- ---------- -------ITK VPENLLPFAV BACU017318/1-1080 LINMTSSTTL NLSADRDAGE RHIFCYLYSC FQRAKEEITK VPENLLPFAV 201 250 ENSTTRP00000004027/1-1070 QCRNLTVSNT RTVLLTPEIY VDQNIHEQLV DLMLEAIXXX XXXXXXXXFE ENSP00000387362/1-1073 QCRNLTVSNT RTVLLTPEIY VDQNIHEQLV DLMLEAIQGA REYMNKIYFE ENSBTAP00000026289/1-1067 QCRNLTVSNT RTVLLTPEIY VDQNIHEQLV DLMVEAILGG -------HFE bmy_03272T0/1-1055 QCRNLTVSNT RTVLLTPEIY VDQNIHEQLV DLMLEAILGG -------HFE BACU017318/1-1080 QCRNLTVSNT RTVLLTPEIY VDQNIHEQLV DLMLEAILGG -------HFE 251 300 ENSTTRP00000004027/1-1070 GVAEFLDEVI EALILDEEVR TFPEVMIPVF DILLGRIKDL ELCQILLYAY ENSP00000387362/1-1073 DVTEFLEEVI EALILDEEVR TFPEVMIPVF DILLGRIKDL ELCQILLYAY ENSBTAP00000026289/1-1067 SVAEFLDEVI EALILDEEVR TFPEVMIPVF DILSSRIKDL ELCQILLYAY bmy_03272T0/1-1055 GVAEFLDEVI EALILDEEVR TFPEVMIPVF DILLGRIKDL ELCQILLYAY BACU017318/1-1080 GVAEFLDEVI EALILDEEVR TFPEVMIPVF DILLGRIKDL ELCQILLYAY 301 350 ENSTTRP00000004027/1-1070 LDILLYFTRQ KDMAKVFVEY IQPKDPSNGQ MYQKTLLGVI LNISCLLKTP ENSP00000387362/1-1073 LDILLYFTRQ KDMAKVFVEY IQPKDPTNGQ MYQKTLLGVI LSISCLLKTP ENSBTAP00000026289/1-1067 LDILLYFTKQ KDMAKVFVDY IQPKDPSNGQ MYQKTLLGVI LNISCLLKTP bmy_03272T0/1-1055 LDILLYFTRQ KDMAKVFVEY IQPKDPSNGQ MYQKTLLGVI LNISCLLKTP BACU017318/1-1080 LDILLYFTRQ KDMAKVFVEY IQPKDPSNGQ MYQKTLLGVI LNISCLLKTP 351 400 ENSTTRP00000004027/1-1070 GVVENHGYFL NPSRSSPQEI KVQEANIHQ- -----FMARF HEKIYQMLKN ENSP00000387362/1-1073 GVVENHGYFL NPSRSSPQEI KVQEANIHQ- -----FMAQF HEKIYQMLKN ENSBTAP00000026289/1-1067 GVIENHGYFL NPSRSSPQEI KVQEANIHQ- -----FMARY HEKIYQMLKN bmy_03272T0/1-1055 GVVENHGYFL NPSRSSPQEI KVQEANIHQV ELFAGFMARF HEKIYQMLKN BACU017318/1-1080 GVVENHGYFL NPSRSSPQEI KVQEANIHQ- -----FMARF HEKIYQMLKN 401 450 ENSTTRP00000004027/1-1070 LLQLSPETKH CTLSWLGNCL HANAGRTKIW ANQMPEIFFQ MYASDAFFLN ENSP00000387362/1-1073 LLQLSPETKH CILSWLGNCL HANAGRTKIW ANQMPEIFFQ MYASDAFFLN ENSBTAP00000026289/1-1067 LLQLSPETKH CILSWLGNCL HANAGRTKIW ANQMPEIFFQ MYASDAFFLN bmy_03272T0/1-1055 LLQLSPETKH CILSWLGNCL HANAGRTKIW ANQMPEIFFQ MYASDAFFLN BACU017318/1-1080 LLQLSPETKH CILSWLGNCL HANAGRTKIW ANQMPEIFFQ MYASDAFFLN 451 500 ENSTTRP00000004027/1-1070 LGAALLKLCQ PFCKPRSSRL LTFNPTYCAL KELND--RKI KNVHMRGLDK ENSP00000387362/1-1073 LGAALLKLCQ PFCKPRSSRL LTFNPTYCAL KELNDEERKI KNVHMRGLDK ENSBTAP00000026289/1-1067 LGAALLKLCQ PFCKPRSSRL LTFNPTYCAL KELNDEERKI KNVHMRGLDK bmy_03272T0/1-1055 LGAALLKLCQ PFCKPRSSRL LTFNPTYCAL KELNDEERKI KNVHMRGLDK BACU017318/1-1080 LGAALLKLCQ PFCKPRSSRL LTFNPTYCAL KELNDEERKI KNVHMRGLDK 501 550 ENSTTRP00000004027/1-1070 ETCLIPAVQE PKFPQNYNLV TENLVLTEYT LYLGFHRLHD QMVKINQNLH ENSP00000387362/1-1073 ETCLIPAVQE PKFPQNYNLV TENLALTEYT LYLGFHRLHD QMVKINQNLH ENSBTAP00000026289/1-1067 ETCLIPAVQE PKFPQNYNLV TENLVLTEYT LYLGFHRLHD QMVKINQNLH bmy_03272T0/1-1055 ETCLIPAVRE PEFPQNYNLV TENLVLTEYT LYLGFHRLHD QMVKINQNLH BACU017318/1-1080 ETCLIPAVRE PEFPQNYNLV TENLVLTEYT LYLGFHRLHD QMVKINQNLH 551 600 ENSTTRP00000004027/1-1070 RLQVAWRDAQ QSSSPAADNL REQF-RLMTI YLST-TAMXX XXXXXXXXXX ENSP00000387362/1-1073 RLQVAWRDAQ QSSSPAADNL REQFERLMTI YLSTKTAMTE PQMLQNCLNL ENSBTAP00000026289/1-1067 RLQVAWRDAQ QSSSPAADNL REQFERLMTV YLSTKTAMTE PQMLQNCLNL bmy_03272T0/1-1055 RLQVAWRDAQ QSSSPAADNL REQFERLMTI YLSTKTAMTE PQMLQNCLNL BACU017318/1-1080 RLQVAWRDAQ QSSSPAADNL REQFERLMTI YLSTKTAMTE PQMLQNCLNL 601 650 ENSTTRP00000004027/1-1070 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF FADNLGDFLI ENSP00000387362/1-1073 QVSMAVLLVQ LAIGNEGSQP IELTFPLPDG YSSLAYVPEF FADNLGDFLI ENSBTAP00000026289/1-1067 QVSMAVLLVQ LAIGNEGSQL MELTFPLPDG YSSLAYVPEF FADNLGDFLI bmy_03272T0/1-1055 QVSMAVLLVQ LAIGNEGSQP IELTFPLPDG YSSLAYVPEF FADNLGDFLI BACU017318/1-1080 QVSMAVLLVQ LAIGNEGSQP IELTFPLPDG YSSLAYVPEF FADNLGDFLI 651 700 ENSTTRP00000004027/1-1070 FLRRFADDIL ETSADSLEHV LHFITIFTGS IEXXXXXXXX XXXXXXXXXX ENSP00000387362/1-1073 FLRRFADDIL ETSADSLEHV LHFITIFTGS IERMKNPHLR AKLAEVLEAV ENSBTAP00000026289/1-1067 FLRRFADDIL ETSADSLEHV LHFITIFTGS IERMKNPHLR AKLAEVLEAV bmy_03272T0/1-1055 FLRRFADDIL ETSADSLEHV LHFITIFTGS IERMKNPHLR AKLAEVLEAV BACU017318/1-1080 FLRRFADDIL ETSADSLEHV LRFITIFTGS IERMKNPHLR AKLAEVLEAV 701 750 ENSTTRP00000004027/1-1070 XXXXXXXXXX XXXXXXXXXX XXXXX----- --------XX XXXXXXXXXX ENSP00000387362/1-1073 MPHLDQTPNP LVSSVFHRKR VFCNF----- --------QY APQLAEALIK ENSBTAP00000026289/1-1067 MPHMDQTPNP LVSSVFHRKR VFCNF----- --------PY ASHLAEALIK bmy_03272T0/1-1055 MPHMDQTPNP LVSSVFHRKR VFCNF----- --------PY ASHLAEALIK BACU017318/1-1080 MPHMDQTPNP LLSSVFHRKR VFCNFPXXXX XXXXXXXXPY ASHLAEALIK 751 800 ENSTTRP00000004027/1-1070 XXXXXXXX-- ---------- ---------- ---------- -XDPHQFEQK ENSP00000387362/1-1073 VFVDIEFT-- ---------- ---------- ---------- -GDPHQFEQK ENSBTAP00000026289/1-1067 VFVDIEFT-- ---------- ---------- ---------- -GDPHQFEQK bmy_03272T0/1-1055 VFVDIEFTAQ SSSFSEYCIV YMSPSCSVAP PLLMFCSYLT AGDPHQFEQK BACU017318/1-1080 VFVDIEFT-- ---------- ---------- ---------- -GDPHQFEQK 801 850 ENSTTRP00000004027/1-1070 FNYRRPMYPI LRYMWGTDTY RESIKDLADY ASKNLEAMNP PLFLRFLNLL ENSP00000387362/1-1073 FNYRRPMYPI LRYMWGTDTY RESIKDLADY ASKNLEAMNP PLFLRFLNLL ENSBTAP00000026289/1-1067 FNYRRPMYPI LKYMWGTDTY RESIKDLADY ASKNLEAMNP PLFLRFLNLL bmy_03272T0/1-1055 FNYRRPMYPI LRYMWGTDAY RESIKDLADY ASKNLEAMNP PLFLRFLNLL BACU017318/1-1080 FNYRRPMYPI LRYMWGTDAY RESIKDLADY ASKNLEAMNP PLFLRFLNLL 851 900 ENSTTRP00000004027/1-1070 MNDAIFLLDE AIQYLSKIKI QQIEKDRGEW DSLTPEARRE KEAGLQMFGQ ENSP00000387362/1-1073 MNDAIFLLDE AIQYLSKIKI QQIEKDRGEW DSLTPEARRE KEAGLQMFGQ ENSBTAP00000026289/1-1067 MNDAIFLLDE AIQYLSKIKI QQIEKDRGEW DNLTPEARRE KEAGLQMFGQ bmy_03272T0/1-1055 MNDAIFLLDE AIQYLSKIKI QQIEKDRGEW DSLTPEARRE KEAGLQMFGQ BACU017318/1-1080 MNDAIFLLDE AIQYLSKIKI QQIEKDRGEW DNLTPEARRE KEAGLQMFGQ 901 950 ENSTTRP00000004027/1-1070 LARFHNIMSN ETIGTLAFLT SEIKSLFVHP FLAERIISML NYFLQHLVGP ENSP00000387362/1-1073 LARFHNIMSN ETIGTLAFLT SEIKSLFVHP FLAERIISML NYFLQHLVGP ENSBTAP00000026289/1-1067 LARFHNIMSN ETIGTLAFLT SEIKSLFVHP FLAERIISML NYFLQHLVGP bmy_03272T0/1-1055 LARFHNIMSN ETIGTLAFLT SEIKSLFVHP FLAERIISML NYFLQHLVGP BACU017318/1-1080 LARFHNIMSN ETIGTLAFLT SEIKSLFVHP FLAERIISML NYFLQHLVGP 951 1000 ENSTTRP00000004027/1-1070 KMGALKVKDF SEFDFKPQQL VSDICTIYLN LXDEENFCAT VPKDGRSYSP ENSP00000387362/1-1073 KMGALKVKDF SEFDFKPQQL VSDICTIYLN LGDEENFCAT VPKDGRSYSP ENSBTAP00000026289/1-1067 KMGALKVKDF SEFDFKPQQL VSDICTIYLN LGDEENFCAT VPKDGRSYSP bmy_03272T0/1-1055 KMGALKVKDF SEFDFKPQQL VSDICTIYLN LGDEENFCAT VPKDGRSYSP BACU017318/1-1080 KMGALKVKDF SEFDFKPQQL VSDICTIYLN LGDEENFCAT VPKDGRSYSP 1001 1050 ENSTTRP00000004027/1-1070 TLFAQTVRVL KKINKPGNMI VAFSNLAERI KSLADLQQQE EETYADACDE ENSP00000387362/1-1073 TLFAQTVRVL KKINKPGNMI MAFSNLAERI KSLADLQQQE EETYADACDE ENSBTAP00000026289/1-1067 TLFAQTVRVL KKINKPGNMI VAFSNLAERI KSLADLQQQE EETYADACDE bmy_03272T0/1-1055 TLFAQTVRVL KKINKPGNMI VAFSNLAERI KSLADLQQQE EETYADACDE BACU017318/1-1080 TLFAQTVRVL KKINKPGNMI VAFSNLAERI KSLADLQQQE EETYADACDE 1051 1100 ENSTTRP00000004027/1-1070 FLDPIMSTLM SDPVVLPSSR VTVDRSTIAR HLLSDQTDPF NRSPLTMDQI ENSP00000387362/1-1073 FLDPIMSTLM CDPVVLPSSR VTVDRSTIAR HLLSDQTDPF NRSPLTMDQI ENSBTAP00000026289/1-1067 FLDPIMSTLM SDPVVLPSSR VTVDRSTIAR HLLSDQTDPF NRSPLTMDQI bmy_03272T0/1-1055 FLDPIMSTLM SDPVVLPSSR VTVDRSTIAR HLLSDQTDPF NRSPLTMDQI BACU017318/1-1080 FLDPIMSTLM SDPVVLPSSR VTVDRSTIAR HLLSDQTDPF NRSPLTMDQI 1101 1150 ENSTTRP00000004027/1-1070 RPNTELKEKI QRWLAERKQQ QKEQLE ENSP00000387362/1-1073 RPNTELKEKI QRWLAERKQ- QKEQLE ENSBTAP00000026289/1-1067 RPNTELKEKI QRWLAERKQQ QKEQLE bmy_03272T0/1-1055 RPNTELKEKI QRWLAERKQR QKEQLE BACU017318/1-1080 RPNTELKEKI QRWLAERKQQ QKEQLE